Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

11371583 .. 11373794

Gene Structure 2212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCCCTATTGTGTCTATCATACAACTGCACACACTTGATTTCTCCCTTTCCCTGCTTATCATCATCATCACCTTCTCCACCCCCAACTGTTTGTACAAACTGTCACTTTTCTTCTGTCTGCAGCCCCCTCCACCCCACTGACCGCCACAACATTTCCACACACATTTCTCTCCACTCCTCACCAATCAAAAACGCAATTGAATCAACAAACCCTAAACCCCAATTTTTCCCTCCAATGCTTCTCCAAACTCAATCTCTCACAACCCATTTGTCCCTTCCATTCCCTCCCTCAAAACCCACCCCCAAAATCCAATCTTTCAATCACGTAAAACCGAACCCATTTCGTAGAACTCTATTTAGAACCCTAAGATGCTCGCTTTCGGCGGTTTCGGAGCCGACCCAGGTGGAAACGAAGACGCACAGCCACAGGCCGGTTCCGGCTGAGGTTTCTAGGACAATTATGGAGTTGGTGTCTGTGGGCACGCTTTCTACTCTGACCCAAGGGGGTTGGCCTTTGGGCATTGGCGTCCGGTTCGCGGTCGACCCAGAAGGGACTCCGGTGCTGTGCTTGAATGCCTCTAATCGGCAGTTTTCTATTGATAGGAGGTCTAGCTTCCATGTCCAGTTAGAGCAAAGCGGGCTGCGAACACCTCAGTGCACGATTTTAGGCAGCATTGACAAACCGGAAGACAGGGCAATGTTGAAGTACCTTCGTTCAGTATGGAAAAAGAGGTTTGGAGAAGAAGTTGATGAAGATCTCATATATGTTGTTTCTGTGGAACGGGTACTTCAGTTGGAGGACTTTAAAGAGGTTGGCATGTGGGTTACATCTTCAGATTATAAAAATGCACAACCTGATCGCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009767 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0015979 GO:0018130 GO:0019222 GO:0019438 GO:0019684 GO:0022900 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0033013 GO:0033014 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0055114 GO:0065007 GO:0070453 GO:0070455 GO:0071704 GO:1901360 GO:1901362 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2470

Protein Analysis

290

Amino Acids

32.29

Weight (kDa)

8.74

Isoelectric Point (pI)

65.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	843
AccI	GTMKAC	1 cut(s)	543
AccII	CGCG	1 cut(s)	539
AciI	CCGC	4 cut(s)	145, 386, 539, 639
AcuI	CTGAAG	2 cut(s)	776, 819
AcyI	GRCGYC	1 cut(s)	528
AfaI	GTAC	3 cut(s)	97, 710, 789
AfiI	CCNNNNNNNGG	3 cut(s)	433, 538, 585
AgsI	TTSAA	4 cut(s)	203, 322, 574, 706
AjnI	CCWGG	1 cut(s)	402
AleI	CACNNNNGTG	1 cut(s)	655
AluBI	AGCT	1 cut(s)	615
AluI	AGCT	1 cut(s)	615
Alw21I	GWGCWC	1 cut(s)	662
Alw44I	GTGCAC	1 cut(s)	658
AoxI	GGCC	3 cut(s)	3, 431, 512
ApaLI	GTGCAC	1 cut(s)	658
ApeKI	GCWGC	3 cut(s)	123, 643, 672
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	63, 174
BaeGI	GKGCMC	2 cut(s)	485, 662
BaeI	ACNNNNGTAYC	2 cut(s)	779, 812
BbsI	GAAGAC	2 cut(s)	422, 696
Bbv12I	GWGCWC	1 cut(s)	662
BbvCI	CCTCAGC	1 cut(s)	444
BbvI	GCAGC	3 cut(s)	135, 630, 684
BciT130I	CCWGG	1 cut(s)	404
BfaI	CTAG	2 cut(s)	453, 612
BfmI	CTRYAG	1 cut(s)	121
BglII	AGATCT	1 cut(s)	757
BisI	GCNGC	3 cut(s)	124, 644, 673
BlsI	GCNGC	3 cut(s)	125, 645, 674
Bme1390I	CCNGG	1 cut(s)	404
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	396, 438
BmrFI	CCNGG	1 cut(s)	404
BmsI	GCATC	1 cut(s)	362
BpiI	GAAGAC	2 cut(s)	422, 696
Bpu10I	CCTNAGC	1 cut(s)	444
BsaAI	YACGTR	1 cut(s)	328
BsaBI	GATNNNNATC	1 cut(s)	756
BsaHI	GRCGYC	1 cut(s)	528
BsaJI	CCNNGG	2 cut(s)	402, 502
BsaWI	WCCGGW	3 cut(s)	531, 559, 685
BsaXI	ACNNNNNCTCC	4 cut(s)	458, 488, 732, 762
Bsc4I	CCNNNNNNNGG	3 cut(s)	433, 538, 585
Bse118I	RCCGGY	1 cut(s)	433
Bse1I	ACTGG	1 cut(s)	625
Bse3DI	GCAATG	1 cut(s)	705
Bse8I	GATNNNNATC	1 cut(s)	756
BseBI	CCWGG	1 cut(s)	404
BseDI	CCNNGG	2 cut(s)	402, 502
BseJI	GATNNNNATC	1 cut(s)	756
BseLI	CCNNNNNNNGG	3 cut(s)	433, 538, 585
BseMI	GCAATG	1 cut(s)	705
BseMII	CTCAG	2 cut(s)	435, 668
BseNI	ACTGG	1 cut(s)	625
BseRI	GAGGAG	1 cut(s)	169
BseSI	GKGCMC	2 cut(s)	485, 662
BseXI	GCAGC	3 cut(s)	135, 630, 684
BsgI	GTGCAG	1 cut(s)	13
Bsh1236I	CGCG	1 cut(s)	539
Bsh1285I	CGRYCG	1 cut(s)	543
BshFI	GGCC	3 cut(s)	5, 433, 514
BsiEI	CGRYCG	1 cut(s)	543
BsiHKAI	GWGCWC	1 cut(s)	662
BsiSI	CCGG	5 cut(s)	434, 440, 532, 560, 686
BslFI	GGGAC	2 cut(s)	259, 568
BslI	CCNNNNNNNGG	3 cut(s)	433, 538, 585
BsmFI	GGGAC	2 cut(s)	259, 568
BsmI	GAATGC	1 cut(s)	580
BsnI	GGCC	3 cut(s)	5, 433, 514
Bsp1286I	GDGCHC	2 cut(s)	485, 662
Bsp1407I	TGTACA	1 cut(s)	95
Bsp143I	GATC	2 cut(s)	757, 859
BspACI	CCGC	4 cut(s)	145, 386, 539, 639
BspANI	GGCC	3 cut(s)	5, 433, 514
BspCNI	CTCAG	2 cut(s)	436, 667
BspFNI	CGCG	1 cut(s)	539
BspLI	GGNNCC	2 cut(s)	396, 438
BspMAI	CTGCAG	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	705
BsrFI	RCCGGY	1 cut(s)	433
BsrGI	TGTACA	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	625
BssAI	RCCGGY	1 cut(s)	433
BssECI	CCNNGG	2 cut(s)	402, 502
BssMI	GATC	2 cut(s)	757, 859
BssNI	GRCGYC	1 cut(s)	528
BssT1I	CCWWGG	1 cut(s)	502
Bst2UI	CCWGG	1 cut(s)	404
Bst4CI	ACNGT	2 cut(s)	91, 104
BstACI	GRCGYC	1 cut(s)	528
BstAUI	TGTACA	1 cut(s)	95
BstBAI	YACGTR	1 cut(s)	328
BstC8I	GCNNGC	3 cut(s)	377, 485, 641
BstDEI	CTNAG	4 cut(s)	368, 444, 654, 867
BstFNI	CGCG	1 cut(s)	539
BstKTI	GATC	2 cut(s)	760, 862
BstMBI	GATC	2 cut(s)	757, 859
BstMCI	CGRYCG	1 cut(s)	543
BstMWI	GCNNNNNNNGC	1 cut(s)	640
BstNI	CCWGG	1 cut(s)	404
BstNSI	RCATGY	1 cut(s)	823
BstSCI	CCNGG	1 cut(s)	402
BstSFI	CTRYAG	1 cut(s)	121
BstSLI	GKGCMC	2 cut(s)	485, 662
BstUI	CGCG	1 cut(s)	539
BstV1I	GCAGC	3 cut(s)	135, 630, 684
BstV2I	GAAGAC	2 cut(s)	422, 696
BstX2I	RGATCY	1 cut(s)	757
BstYI	RGATCY	1 cut(s)	757
BsuRI	GGCC	3 cut(s)	5, 433, 514
BtsIMutI	CAGTG	2 cut(s)	138, 662
Cac8I	GCNNGC	3 cut(s)	377, 485, 641
Cfr10I	RCCGGY	1 cut(s)	433
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	2 cut(s)	427, 517
Csp6I	GTAC	3 cut(s)	96, 709, 788
CviAII	CATG	2 cut(s)	620, 820
CviJI	RGCY	9 cut(s)	5, 126, 397, 426, 433, 443, 514, 615, 643
CviKI_1	RGCY	9 cut(s)	5, 126, 397, 426, 433, 443, 514, 615, 643
CviQI	GTAC	3 cut(s)	96, 709, 788
DdeI	CTNAG	4 cut(s)	368, 444, 654, 867
DpnI	GATC	2 cut(s)	759, 861
DpnII	GATC	2 cut(s)	757, 859
DraI	TTTAAA	1 cut(s)	808
Eco130I	CCWWGG	1 cut(s)	502
Eco57I	CTGAAG	2 cut(s)	776, 819
EcoRII	CCWGG	1 cut(s)	402
EcoT14I	CCWWGG	1 cut(s)	502
ErhI	CCWWGG	1 cut(s)	502
FaeI	CATG	2 cut(s)	623, 823
FaiI	YATR	9 cut(s)	22, 464, 621, 724, 764, 766, 768, 821, 843
FaqI	GGGAC	2 cut(s)	259, 568
FatI	CATG	2 cut(s)	619, 819
FauI	CCCGC	1 cut(s)	632
FblI	GTMKAC	1 cut(s)	543
Fnu4HI	GCNGC	3 cut(s)	124, 644, 673
Fsp4HI	GCNGC	3 cut(s)	124, 644, 673
FspBI	CTAG	2 cut(s)	453, 612
GluI	GCNGC	3 cut(s)	124, 644, 673
HaeIII	GGCC	3 cut(s)	5, 433, 514
HapII	CCGG	5 cut(s)	434, 440, 532, 560, 686
HgaI	GACGC	2 cut(s)	427, 517
Hin1I	GRCGYC	1 cut(s)	528
Hin1II	CATG	2 cut(s)	623, 823
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HinfI	GANTC	2 cut(s)	203, 556
HpaII	CCGG	5 cut(s)	434, 440, 532, 560, 686
HphI	GGTGA	2 cut(s)	63, 174
Hpy166II	GTNNAC	2 cut(s)	544, 660
Hpy188I	TCNGA	3 cut(s)	394, 498, 838
Hpy8I	GTNNAC	2 cut(s)	544, 660
HpyAV	CCTTC	4 cut(s)	84, 287, 545, 722
HpyCH4III	ACNGT	2 cut(s)	91, 104
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	4 cut(s)	30, 123, 660, 851
HpyF10VI	GCNNNNNNNGC	1 cut(s)	640
HpyF3I	CTNAG	4 cut(s)	368, 444, 654, 867
HpySE526I	ACGT	1 cut(s)	327
Hsp92I	GRCGYC	1 cut(s)	528
Hsp92II	CATG	2 cut(s)	623, 823
Kzo9I	GATC	2 cut(s)	757, 859
LmnI	GCTCC	1 cut(s)	394
Lsp1109I	GCAGC	3 cut(s)	135, 630, 684
LweI	GCATC	1 cut(s)	362
MaeI	CTAG	2 cut(s)	453, 612
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	2 cut(s)	104, 826
MalI	GATC	2 cut(s)	759, 861
MboI	GATC	2 cut(s)	757, 859
MboII	GAAGA	6 cut(s)	105, 427, 701, 755, 767, 825
MfeI	CAATTG	1 cut(s)	198
MflI	RGATCY	1 cut(s)	757
MhlI	GDGCHC	2 cut(s)	485, 662
MluCI	AATT	3 cut(s)	198, 224, 459
MlyI	GAGTC	1 cut(s)	550
MmeI	TCCRAC	1 cut(s)	777
MseI	TTAA	1 cut(s)	807
MslI	CAYNNNNRTG	1 cut(s)	655
MspI	CCGG	5 cut(s)	434, 440, 532, 560, 686
MspR9I	CCNGG	1 cut(s)	404
MunI	CAATTG	1 cut(s)	198
Mva1269I	GAATGC	1 cut(s)	580
MvaI	CCWGG	1 cut(s)	404
MvnI	CGCG	1 cut(s)	539
MwoI	GCNNNNNNNGC	1 cut(s)	640
NdeII	GATC	2 cut(s)	757, 859
NlaIII	CATG	2 cut(s)	623, 823
NlaIV	GGNNCC	2 cut(s)	396, 438
NmuCI	GTSAC	1 cut(s)	104
NspI	RCATGY	1 cut(s)	823
OliI	CACNNNNGTG	1 cut(s)	655
PctI	GAATGC	1 cut(s)	580
PfeI	GAWTC	1 cut(s)	203
PkrI	GCNGC	3 cut(s)	125, 645, 674
PleI	GAGTC	1 cut(s)	550
PpsI	GAGTC	1 cut(s)	550
Ppu21I	YACGTR	1 cut(s)	328
PsiI	TTATAA	1 cut(s)	843
Psp6I	CCWGG	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	402
PspN4I	GGNNCC	2 cut(s)	396, 438
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	757
RsaI	GTAC	3 cut(s)	97, 710, 789
RsaNI	GTAC	3 cut(s)	96, 709, 788
RseI	CAYNNNNRTG	1 cut(s)	655
SalI	GTCGAC	1 cut(s)	542
SaqAI	TTAA	1 cut(s)	807
SatI	GCNGC	3 cut(s)	124, 644, 673
Sau3AI	GATC	2 cut(s)	757, 859
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	550
ScrFI	CCNGG	1 cut(s)	404
SduI	GDGCHC	2 cut(s)	485, 662
SfaNI	GCATC	1 cut(s)	362
SfcI	CTRYAG	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	655
Sse9I	AATT	3 cut(s)	198, 224, 459
SsiI	CCGC	4 cut(s)	145, 386, 539, 639
SspMI	CTAG	2 cut(s)	453, 612
StyD4I	CCNGG	1 cut(s)	402
StyI	CCWWGG	1 cut(s)	502
TaaI	ACNGT	2 cut(s)	91, 104
TaiI	ACGT	1 cut(s)	330
TaqI	TCGA	1 cut(s)	543
TasI	AATT	3 cut(s)	198, 224, 459
TatI	WGTACW	1 cut(s)	95
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	1 cut(s)	807
Tru9I	TTAA	1 cut(s)	807
TscAI	CASTG	2 cut(s)	145, 662
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	3 cut(s)	123, 643, 672
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	1 cut(s)	768
TspRI	CASTG	2 cut(s)	145, 662
VneI	GTGCAC	1 cut(s)	658
XceI	RCATGY	1 cut(s)	823
XmiI	GTMKAC	1 cut(s)	543
XspI	CTAG	2 cut(s)	453, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.