Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

11521697 .. 11524589

Gene Structure 2893 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTTGAAGGGCAGGGGTGGTGAGAAAGAGGTTGTCCTGGACCCAATTGACATTCAAAGAAGAGAAAAGGTCAAAGAAGCTATGATTCACGCATGGAGTTCATATGAGAAGTATGCATGGGGCCAAGATGAACTTCAGCCGCAATCAAAGAAAGGTGTTAATAGCTTTGGTGGTCTTGGAGCAACAGTAGTAGACTCTCTTGATACACTGTATATAATGGGTCTTCATGAGCAGTTCCAAAAAGCTAGAGAGTGGATTGCAACCTCATTGGATTTTGACAAGGATTATGAGGCTAGTGTTTTTGAGACAACCATAAGAGTTGTAGGTGGACTTCTCAGTGCATATGATCGATCTCAGAAGATAAACTTTTCCTTGATAAGGCTAGAGAGATTGCAGACAGATTGCTGCCTGCATGGGATACACCTAGTGGGATACCTTACAACATTATCAACTTGGCACATGGAAGGCCGCACAATCCTTCATGGACTGGGGGTGAAAGTATTTTGGCAGATTCTGGCACAGAGCAGGTGGAGTTTATTGCTCTTTCTCAGAGAACAGGAGACCCAAAATACCAGCAGAAGGCTGAGAAAGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004571 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0006491 GO:0006807 GO:0008150 GO:0008152 GO:0009100 GO:0009987 GO:0012505 GO:0015923 GO:0015924 GO:0016020 GO:0016787 GO:0016798 GO:0019538 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

Glyco_hydro_47

Protein Analysis

199

Amino Acids

22.82

Weight (kDa)

8.51

Isoelectric Point (pI)

36.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_47	PF01532	27 - 120	5.5e-40	Glycosyl hydrolase family 47

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	516
Acc36I	ACCTGC	1 cut(s)	516
AccI	GTMKAC	1 cut(s)	192
AciI	CCGC	2 cut(s)	140, 469
AcuI	CTGAAG	1 cut(s)	119
AdeI	CACNNNGTG	1 cut(s)	427
AfiI	CCNNNNNNNGG	2 cut(s)	378, 579
AgsI	TTSAA	2 cut(s)	7, 56
AjnI	CCWGG	1 cut(s)	36
AjuI	GAANNNNNNNTTGG	2 cut(s)	117, 149
AluBI	AGCT	3 cut(s)	80, 165, 245
AluI	AGCT	3 cut(s)	80, 165, 245
Alw26I	GTCTC	2 cut(s)	299, 554
AlwNI	CAGNNNCTG	1 cut(s)	514
AoxI	GGCC	2 cut(s)	121, 466
ApeKI	GCWGC	1 cut(s)	405
AspS9I	GGNCC	2 cut(s)	40, 121
AsuHPI	GGTGA	2 cut(s)	32, 505
AvaII	GGWCC	1 cut(s)	40
BarI	GAAGNNNNNNTAC	2 cut(s)	315, 347
BbsI	GAAGAC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	392
BciT130I	CCWGG	1 cut(s)	38
BciVI	GTATCC	2 cut(s)	411, 425
BcoDI	GTCTC	2 cut(s)	299, 554
BfaI	CTAG	4 cut(s)	246, 294, 383, 425
BfuAI	ACCTGC	1 cut(s)	516
BfuI	GTATCC	2 cut(s)	411, 425
BisI	GCNGC	3 cut(s)	140, 406, 469
BlsI	GCNGC	3 cut(s)	141, 407, 470
Bme1390I	CCNGG	1 cut(s)	38
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	40, 121
BmiI	GGNNCC	2 cut(s)	42, 122
BmrFI	CCNGG	1 cut(s)	38
BmrI	ACTGGG	1 cut(s)	497
BmuI	ACTGGG	1 cut(s)	497
BpiI	GAAGAC	1 cut(s)	215
Bsa29I	ATCGAT	1 cut(s)	349
BsaI	GGTCTC	1 cut(s)	554
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bsc4I	CCNNNNNNNGG	2 cut(s)	378, 579
Bse1I	ACTGG	1 cut(s)	492
BseBI	CCWGG	1 cut(s)	38
BseCI	ATCGAT	1 cut(s)	349
BseLI	CCNNNNNNNGG	2 cut(s)	378, 579
BseMII	CTCAG	4 cut(s)	349, 368, 562, 575
BseNI	ACTGG	1 cut(s)	492
BseXI	GCAGC	1 cut(s)	392
BshFI	GGCC	2 cut(s)	123, 468
BshVI	ATCGAT	1 cut(s)	349
BslI	CCNNNNNNNGG	2 cut(s)	378, 579
BsmAI	GTCTC	2 cut(s)	299, 554
BsnI	GGCC	2 cut(s)	123, 468
Bso31I	GGTCTC	1 cut(s)	554
Bsp143I	GATC	2 cut(s)	346, 350
BspACI	CCGC	2 cut(s)	140, 469
BspANI	GGCC	2 cut(s)	123, 468
BspCNI	CTCAG	4 cut(s)	348, 367, 561, 576
BspDI	ATCGAT	1 cut(s)	349
BspHI	TCATGA	1 cut(s)	226
BspLI	GGNNCC	2 cut(s)	42, 122
BspMI	ACCTGC	1 cut(s)	516
BspTNI	GGTCTC	1 cut(s)	554
BsrI	ACTGG	1 cut(s)	492
BssMI	GATC	2 cut(s)	346, 350
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	2 cut(s)	187, 210
Bst6I	CTCTTC	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	410
BstDEI	CTNAG	4 cut(s)	335, 354, 548, 584
BstENI	CCTNNNNNAGG	1 cut(s)	376
BstKTI	GATC	2 cut(s)	349, 353
BstMAI	GTCTC	2 cut(s)	299, 554
BstMBI	GATC	2 cut(s)	346, 350
BstNI	CCWGG	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	392
BstV2I	GAAGAC	1 cut(s)	215
Bsu15I	ATCGAT	1 cut(s)	349
BsuI	GTATCC	2 cut(s)	411, 425
BsuRI	GGCC	2 cut(s)	123, 468
BsuTUI	ATCGAT	1 cut(s)	349
BtsIMutI	CAGTG	2 cut(s)	206, 343
BveI	ACCTGC	1 cut(s)	516
Cac8I	GCNNGC	1 cut(s)	410
CaiI	CAGNNNCTG	1 cut(s)	514
CciI	TCATGA	1 cut(s)	226
Cfr13I	GGNCC	2 cut(s)	40, 121
ClaI	ATCGAT	1 cut(s)	349
CviAII	CATG	6 cut(s)	93, 117, 227, 413, 460, 482
CviJI	RGCY	9 cut(s)	80, 123, 139, 165, 245, 293, 382, 468, 583
CviKI_1	RGCY	9 cut(s)	80, 123, 139, 165, 245, 293, 382, 468, 583
DdeI	CTNAG	4 cut(s)	335, 354, 548, 584
DpnI	GATC	2 cut(s)	348, 352
DpnII	GATC	2 cut(s)	346, 350
DraIII	CACNNNGTG	1 cut(s)	427
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
Eco31I	GGTCTC	1 cut(s)	554
Eco47I	GGWCC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	119
EcoNI	CCTNNNNNAGG	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	36
EcoT22I	ATGCAT	1 cut(s)	118
FaeI	CATG	6 cut(s)	96, 120, 230, 416, 463, 485
FalI	AAGNNNNNCTT	4 cut(s)	117, 149, 350, 382
FatI	CATG	6 cut(s)	92, 116, 226, 412, 459, 481
FauNDI	CATATG	2 cut(s)	103, 343
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	3 cut(s)	140, 406, 469
Fsp4HI	GCNGC	3 cut(s)	140, 406, 469
FspBI	CTAG	4 cut(s)	246, 294, 383, 425
GluI	GCNGC	3 cut(s)	140, 406, 469
HaeIII	GGCC	2 cut(s)	123, 468
Hin1II	CATG	6 cut(s)	96, 120, 230, 416, 463, 485
HinfI	GANTC	3 cut(s)	85, 194, 511
HphI	GGTGA	2 cut(s)	32, 505
Hpy166II	GTNNAC	2 cut(s)	193, 329
Hpy188I	TCNGA	2 cut(s)	357, 551
Hpy188III	TCNNGA	2 cut(s)	200, 227
Hpy8I	GTNNAC	2 cut(s)	193, 329
HpyAV	CCTTC	3 cut(s)	458, 488, 573
HpyCH4III	ACNGT	2 cut(s)	187, 210
HpyCH4V	TGCA	5 cut(s)	116, 260, 341, 394, 412
HpyF3I	CTNAG	4 cut(s)	335, 354, 548, 584
Hsp92II	CATG	6 cut(s)	96, 120, 230, 416, 463, 485
Kzo9I	GATC	2 cut(s)	346, 350
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	8 cut(s)	23, 50, 422, 473, 500, 511, 542, 586
Lsp1109I	GCAGC	1 cut(s)	392
MaeI	CTAG	4 cut(s)	246, 294, 383, 425
MalI	GATC	2 cut(s)	348, 352
MboI	GATC	2 cut(s)	346, 350
MboII	GAAGA	3 cut(s)	72, 215, 370
MfeI	CAATTG	1 cut(s)	45
MluCI	AATT	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	188
MnlI	CCTC	3 cut(s)	22, 274, 283
Mph1103I	ATGCAT	1 cut(s)	118
MseI	TTAA	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	38
MunI	CAATTG	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	38
NdeI	CATATG	2 cut(s)	103, 343
NdeII	GATC	2 cut(s)	346, 350
NlaIII	CATG	6 cut(s)	96, 120, 230, 416, 463, 485
NlaIV	GGNNCC	2 cut(s)	42, 122
NsiI	ATGCAT	1 cut(s)	118
PagI	TCATGA	1 cut(s)	226
PaqCI	CACCTGC	1 cut(s)	516
PfeI	GAWTC	2 cut(s)	85, 511
PfoI	TCCNGGA	1 cut(s)	36
PkrI	GCNGC	3 cut(s)	141, 407, 470
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	2 cut(s)	42, 122
PspPI	GGNCC	2 cut(s)	40, 121
PstNI	CAGNNNCTG	1 cut(s)	514
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	3 cut(s)	140, 406, 469
Sau3AI	GATC	2 cut(s)	346, 350
Sau96I	GGNCC	2 cut(s)	40, 121
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	38
SinI	GGWCC	1 cut(s)	40
Sse9I	AATT	1 cut(s)	45
SsiI	CCGC	2 cut(s)	140, 469
SspMI	CTAG	4 cut(s)	246, 294, 383, 425
StyD4I	CCNGG	1 cut(s)	36
TaaI	ACNGT	2 cut(s)	187, 210
TaqI	TCGA	1 cut(s)	349
TasI	AATT	1 cut(s)	45
TauI	GCSGC	2 cut(s)	142, 471
TfiI	GAWTC	2 cut(s)	85, 511
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	2 cut(s)	213, 343
TseI	GCWGC	1 cut(s)	405
TspDTI	ATGAA	4 cut(s)	90, 144, 215, 470
TspRI	CASTG	2 cut(s)	213, 343
VpaK11BI	GGWCC	1 cut(s)	40
XagI	CCTNNNNNAGG	1 cut(s)	376
XmiI	GTMKAC	1 cut(s)	192
XspI	CTAG	4 cut(s)	246, 294, 383, 425
Zsp2I	ATGCAT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.