pycom17g14220

chromatin binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Forward (+)
11756246 .. 11756608
363 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 363 bp
ATGTCAGAAGTTACTGTCGCATCTAATAGCAAGGCACATGGGAAGAAAGTTTGCATTGATGGAGTTCCAGAAAGCTCTAACTGTAGGTTGGGAGATTCTGGAACCCTTCCAGGCAATATGATGCCACAGCATGCCCATGAAAATTTGACCGTTCAAAATATGAGTACAAATAACTTGTTGGCCCTAAGGTCCAAGAGTTTTATGACTGATGCTTCTGTTCCAGCACCACATTTAGTACCCAACCAATCGAGGTATCAAATGGGGGTTGGAACCCCAAGAAGCATGCAGGACCCTGGATCAGGAAGTGTTGTCAATGCATCACCTTCCCCTGTTGGGCAAGACATGATCGATCTCGTATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

12.67

Weight (kDa)

6.38

Isoelectric Point (pI)

54.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 357
AclWI GGATC 1 cut(s) 304
AcsI RAATTY 1 cut(s) 142
AfaI GTAC 2 cut(s) 166, 237
AfiI CCNNNNNNNGG 2 cut(s) 299, 333
AgsI TTSAA 1 cut(s) 155
AjnI CCWGG 2 cut(s) 109, 292
AluBI AGCT 1 cut(s) 75
AluI AGCT 1 cut(s) 75
AlwI GGATC 1 cut(s) 304
AoxI GGCC 1 cut(s) 180
ApoI RAATTY 1 cut(s) 142
AspS9I GGNCC 3 cut(s) 181, 189, 289
AsuHPI GGTGA 1 cut(s) 312
AvaII GGWCC 2 cut(s) 189, 289
AxyI CCTNAGG 1 cut(s) 185
BccI CCATC 1 cut(s) 53
BciT130I CCWGG 2 cut(s) 111, 294
BfmI CTRYAG 1 cut(s) 82
Bme1390I CCNGG 2 cut(s) 111, 294
Bme18I GGWCC 2 cut(s) 189, 289
BmgT120I GGNCC 3 cut(s) 181, 189, 289
BmiI GGNNCC 3 cut(s) 103, 271, 291
BmrFI CCNGG 2 cut(s) 111, 294
BmsI GCATC 4 cut(s) 29, 111, 199, 326
Bsa29I ATCGAT 1 cut(s) 348
BsaJI CCNNGG 1 cut(s) 292
Bsc4I CCNNNNNNNGG 2 cut(s) 299, 333
Bse21I CCTNAGG 1 cut(s) 185
BseBI CCWGG 2 cut(s) 111, 294
BseCI ATCGAT 1 cut(s) 348
BseDI CCNNGG 1 cut(s) 292
BseLI CCNNNNNNNGG 2 cut(s) 299, 333
BshFI GGCC 1 cut(s) 182
BshVI ATCGAT 1 cut(s) 348
BslI CCNNNNNNNGG 2 cut(s) 299, 333
BsnI GGCC 1 cut(s) 182
Bsp143I GATC 3 cut(s) 296, 345, 349
BspANI GGCC 1 cut(s) 182
BspDI ATCGAT 1 cut(s) 348
BspLI GGNNCC 3 cut(s) 103, 271, 291
BspPI GGATC 1 cut(s) 304
BssECI CCNNGG 1 cut(s) 292
BssMI GATC 3 cut(s) 296, 345, 349
BssNAI GTATAC 1 cut(s) 358
Bst1107I GTATAC 1 cut(s) 358
Bst2UI CCWGG 2 cut(s) 111, 294
Bst4CI ACNGT 3 cut(s) 16, 83, 151
BstC8I GCNNGC 2 cut(s) 132, 284
BstDEI CTNAG 1 cut(s) 185
BstENI CCTNNNNNAGG 1 cut(s) 297
BstKTI GATC 3 cut(s) 299, 348, 352
BstMBI GATC 3 cut(s) 296, 345, 349
BstNI CCWGG 2 cut(s) 111, 294
BstNSI RCATGY 2 cut(s) 134, 286
BstSCI CCNGG 2 cut(s) 109, 292
BstSFI CTRYAG 1 cut(s) 82
BstZ17I GTATAC 1 cut(s) 358
Bsu15I ATCGAT 1 cut(s) 348
Bsu36I CCTNAGG 1 cut(s) 185
BsuRI GGCC 1 cut(s) 182
BsuTUI ATCGAT 1 cut(s) 348
Cac8I GCNNGC 2 cut(s) 132, 284
Cfr13I GGNCC 3 cut(s) 181, 189, 289
ClaI ATCGAT 1 cut(s) 348
Csp6I GTAC 2 cut(s) 165, 236
CviAII CATG 5 cut(s) 38, 131, 137, 283, 343
CviJI RGCY 2 cut(s) 75, 182
CviKI_1 RGCY 2 cut(s) 75, 182
CviQI GTAC 2 cut(s) 165, 236
DdeI CTNAG 1 cut(s) 185
DpnI GATC 3 cut(s) 298, 347, 351
DpnII GATC 3 cut(s) 296, 345, 349
Eco47I GGWCC 2 cut(s) 189, 289
Eco81I CCTNAGG 1 cut(s) 185
EcoNI CCTNNNNNAGG 1 cut(s) 297
EcoO109I RGGNCCY 1 cut(s) 289
EcoRII CCWGG 2 cut(s) 109, 292
EcoT22I ATGCAT 1 cut(s) 319
FaeI CATG 5 cut(s) 41, 134, 140, 286, 346
FaiI YATR 9 cut(s) 39, 119, 132, 138, 161, 203, 284, 344, 358
FatI CATG 5 cut(s) 37, 130, 136, 282, 342
FblI GTMKAC 1 cut(s) 357
HaeIII GGCC 1 cut(s) 182
Hin1II CATG 5 cut(s) 41, 134, 140, 286, 346
HinfI GANTC 1 cut(s) 95
HphI GGTGA 1 cut(s) 312
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 3 cut(s) 68, 99, 300
Hpy8I GTNNAC 1 cut(s) 358
HpyAV CCTTC 2 cut(s) 116, 333
HpyCH4III ACNGT 3 cut(s) 16, 83, 151
HpyCH4V TGCA 3 cut(s) 54, 286, 317
HpyF3I CTNAG 1 cut(s) 185
Hsp92II CATG 5 cut(s) 41, 134, 140, 286, 346
Kzo9I GATC 3 cut(s) 296, 345, 349
LweI GCATC 4 cut(s) 29, 111, 199, 326
MaeIII GTNAC 1 cut(s) 10
MalI GATC 3 cut(s) 298, 347, 351
MboI GATC 3 cut(s) 296, 345, 349
MboII GAAGA 1 cut(s) 55
MluCI AATT 1 cut(s) 142
MmeI TCCRAC 1 cut(s) 247
MnlI CCTC 1 cut(s) 243
Mph1103I ATGCAT 1 cut(s) 319
MslI CAYNNNNRTG 1 cut(s) 135
MspR9I CCNGG 2 cut(s) 111, 294
MvaI CCWGG 2 cut(s) 111, 294
NdeII GATC 3 cut(s) 296, 345, 349
NlaIII CATG 5 cut(s) 41, 134, 140, 286, 346
NlaIV GGNNCC 3 cut(s) 103, 271, 291
NsiI ATGCAT 1 cut(s) 319
NspI RCATGY 2 cut(s) 134, 286
PaeI GCATGC 2 cut(s) 134, 286
PfeI GAWTC 1 cut(s) 95
PpuMI RGGWCCY 1 cut(s) 289
Psp5II RGGWCCY 1 cut(s) 289
Psp6I CCWGG 2 cut(s) 109, 292
PspGI CCWGG 2 cut(s) 109, 292
PspN4I GGNNCC 3 cut(s) 103, 271, 291
PspPI GGNCC 3 cut(s) 181, 189, 289
PspPPI RGGWCCY 1 cut(s) 289
RsaI GTAC 2 cut(s) 166, 237
RsaNI GTAC 2 cut(s) 165, 236
RseI CAYNNNNRTG 1 cut(s) 135
Sau3AI GATC 3 cut(s) 296, 345, 349
Sau96I GGNCC 3 cut(s) 181, 189, 289
ScrFI CCNGG 2 cut(s) 111, 294
SetI ASST 5 cut(s) 77, 89, 191, 254, 325
SfaNI GCATC 4 cut(s) 29, 111, 199, 326
SfcI CTRYAG 1 cut(s) 82
SinI GGWCC 2 cut(s) 189, 289
SmiMI CAYNNNNRTG 1 cut(s) 135
SphI GCATGC 2 cut(s) 134, 286
Sse9I AATT 1 cut(s) 142
StyD4I CCNGG 2 cut(s) 109, 292
TaaI ACNGT 3 cut(s) 16, 83, 151
TaqI TCGA 2 cut(s) 248, 348
TasI AATT 1 cut(s) 142
TatI WGTACW 1 cut(s) 164
TfiI GAWTC 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 153
VpaK11BI GGWCC 2 cut(s) 189, 289
XagI CCTNNNNNAGG 1 cut(s) 297
XapI RAATTY 1 cut(s) 142
XceI RCATGY 2 cut(s) 134, 286
XmiI GTMKAC 1 cut(s) 357
Zsp2I ATGCAT 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.