pycom17g14230

chromatin binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Forward (+)
11756764 .. 11757132
369 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 369 bp
ATGGATCACTTTCCTGATATGAACTGGAAGAATAACTATTTGCAGCAGCAAGCAATGGCCAAAGGAATTCAGTTTTCAAATACAGGCATTCAGAAGTTTTCCCAGCAGATGTTTGACGGGGCAATGAGTCAGGACCCTGGGAAAATGCCATTTACTGTAGGACAGCCAAACATGAGATTTGGTGCCAAGGAAGAGCCGTTTGAGACAGGTAAGATAGACGGGTTAGAGCTCGGTGGGATTAAGAACGATATGCAGATAATGGAAGGAGACACAAGCCATCTCGATCCGTCGAGGCTTCCCCAAAGATTACCACAGCATGCATTCATGAGATCTATCACGTTGGTATTTTTCTCAGCCATCCTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.84

Weight (kDa)

5.54

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 182
AclWI GGATC 2 cut(s) 12, 278
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 1 cut(s) 66
AgsI TTSAA 1 cut(s) 78
AjnI CCWGG 2 cut(s) 136, 360
AluBI AGCT 1 cut(s) 229
AluI AGCT 1 cut(s) 229
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 2 cut(s) 197, 261
AlwI GGATC 2 cut(s) 12, 278
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 2 cut(s) 43, 46
ApoI RAATTY 1 cut(s) 66
AspS9I GGNCC 1 cut(s) 133
AvaII GGWCC 1 cut(s) 133
BalI TGGCCA 1 cut(s) 59
BanI GGYRCC 1 cut(s) 182
BanII GRGCYC 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 55, 58
BccI CCATC 2 cut(s) 285, 365
BceAI ACGGC 1 cut(s) 181
BciT130I CCWGG 2 cut(s) 138, 362
BcoDI GTCTC 2 cut(s) 197, 261
BfmI CTRYAG 1 cut(s) 156
BglII AGATCT 1 cut(s) 329
BisI GCNGC 2 cut(s) 44, 47
BlsI GCNGC 2 cut(s) 45, 48
Bme1390I CCNGG 2 cut(s) 138, 362
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 133
BmiI GGNNCC 2 cut(s) 135, 184
BmrFI CCNGG 2 cut(s) 138, 362
BsaJI CCNNGG 3 cut(s) 136, 137, 186
Bse1I ACTGG 1 cut(s) 29
Bse3DI GCAATG 2 cut(s) 60, 129
BseBI CCWGG 2 cut(s) 138, 362
BseDI CCNNGG 3 cut(s) 136, 137, 186
BseGI GGATG 1 cut(s) 357
BseMI GCAATG 2 cut(s) 60, 129
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 1 cut(s) 29
BseXI GCAGC 2 cut(s) 55, 58
BseYI CCCAGC 1 cut(s) 102
BshFI GGCC 1 cut(s) 59
BshNI GGYRCC 1 cut(s) 182
BsiHKAI GWGCWC 1 cut(s) 231
BsmAI GTCTC 2 cut(s) 197, 261
BsmI GAATGC 2 cut(s) 87, 320
BsnI GGCC 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 3 cut(s) 4, 283, 329
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 1 cut(s) 365
BspHI TCATGA 1 cut(s) 324
BspLI GGNNCC 2 cut(s) 135, 184
BspPI GGATC 2 cut(s) 12, 278
BspQI GCTCTTC 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 182
BsrDI GCAATG 2 cut(s) 60, 129
BsrI ACTGG 1 cut(s) 29
BssECI CCNNGG 3 cut(s) 136, 137, 186
BssMI GATC 3 cut(s) 4, 283, 329
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 2 cut(s) 138, 362
Bst4CI ACNGT 1 cut(s) 157
Bst6I CTCTTC 1 cut(s) 186
BstC8I GCNNGC 2 cut(s) 51, 318
BstDEI CTNAG 1 cut(s) 352
BstF5I GGATG 1 cut(s) 357
BstKTI GATC 3 cut(s) 7, 286, 332
BstMAI GTCTC 2 cut(s) 197, 261
BstMBI GATC 3 cut(s) 4, 283, 329
BstNI CCWGG 2 cut(s) 138, 362
BstNSI RCATGY 1 cut(s) 320
BstSCI CCNGG 2 cut(s) 136, 360
BstSFI CTRYAG 1 cut(s) 156
BstV1I GCAGC 2 cut(s) 55, 58
BstX2I RGATCY 1 cut(s) 329
BstYI RGATCY 1 cut(s) 329
BsuRI GGCC 1 cut(s) 59
BtsCI GGATG 1 cut(s) 357
Cac8I GCNNGC 2 cut(s) 51, 318
CciI TCATGA 1 cut(s) 324
Cfr13I GGNCC 1 cut(s) 133
CviAII CATG 3 cut(s) 172, 317, 325
CviJI RGCY 7 cut(s) 59, 166, 196, 229, 276, 295, 356
CviKI_1 RGCY 7 cut(s) 59, 166, 196, 229, 276, 295, 356
DdeI CTNAG 1 cut(s) 352
DpnI GATC 3 cut(s) 6, 285, 331
DpnII GATC 3 cut(s) 4, 283, 329
EaeI YGGCCR 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 133
Eco53kI GAGCTC 1 cut(s) 229
EcoICRI GAGCTC 1 cut(s) 229
EcoO109I RGGNCCY 1 cut(s) 133
EcoRI GAATTC 1 cut(s) 66
EcoRII CCWGG 2 cut(s) 136, 360
EcoT14I CCWWGG 1 cut(s) 186
EcoT22I ATGCAT 1 cut(s) 322
EcoT38I GRGCYC 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 3 cut(s) 175, 320, 328
FaiI YATR 5 cut(s) 20, 173, 251, 318, 326
FatI CATG 3 cut(s) 171, 316, 324
Fnu4HI GCNGC 2 cut(s) 44, 47
FokI GGATG 1 cut(s) 344
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 2 cut(s) 44, 47
GluI GCNGC 2 cut(s) 44, 47
GsaI CCCAGC 1 cut(s) 106
HaeIII GGCC 1 cut(s) 59
Hin1II CATG 3 cut(s) 175, 320, 328
HinfI GANTC 1 cut(s) 127
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 4 cut(s) 14, 131, 281, 325
Hpy99I CGWCG 1 cut(s) 292
HpyAV CCTTC 1 cut(s) 257
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4IV ACGT 1 cut(s) 338
HpyCH4V TGCA 3 cut(s) 43, 253, 320
HpyF3I CTNAG 1 cut(s) 352
HpySE526I ACGT 1 cut(s) 338
Hsp92II CATG 3 cut(s) 175, 320, 328
Kzo9I GATC 3 cut(s) 4, 283, 329
LguI GCTCTTC 1 cut(s) 186
LpnPI CCDG 9 cut(s) 10, 27, 69, 116, 116, 123, 150, 192, 347
Lsp1109I GCAGC 2 cut(s) 55, 58
MaeII ACGT 1 cut(s) 338
MalI GATC 3 cut(s) 6, 285, 331
MboI GATC 3 cut(s) 4, 283, 329
MboII GAAGA 2 cut(s) 40, 203
MflI RGATCY 1 cut(s) 329
MhlI GDGCHC 1 cut(s) 231
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 1 cut(s) 66
MluNI TGGCCA 1 cut(s) 59
MlyI GAGTC 1 cut(s) 136
MnlI CCTC 1 cut(s) 285
Mox20I TGGCCA 1 cut(s) 59
Mph1103I ATGCAT 1 cut(s) 322
MscI TGGCCA 1 cut(s) 59
MseI TTAA 1 cut(s) 240
Msp20I TGGCCA 1 cut(s) 59
MspR9I CCNGG 2 cut(s) 138, 362
Mva1269I GAATGC 2 cut(s) 87, 320
MvaI CCWGG 2 cut(s) 138, 362
NdeII GATC 3 cut(s) 4, 283, 329
NlaIII CATG 3 cut(s) 175, 320, 328
NlaIV GGNNCC 2 cut(s) 135, 184
NsiI ATGCAT 1 cut(s) 322
NspI RCATGY 1 cut(s) 320
PaeI GCATGC 1 cut(s) 320
PagI TCATGA 1 cut(s) 324
PasI CCCWGGG 1 cut(s) 137
PciSI GCTCTTC 1 cut(s) 186
PctI GAATGC 2 cut(s) 87, 320
PfoI TCCNGGA 1 cut(s) 360
PkrI GCNGC 2 cut(s) 45, 48
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
PpuMI RGGWCCY 1 cut(s) 133
Psp124BI GAGCTC 1 cut(s) 231
Psp5II RGGWCCY 1 cut(s) 133
Psp6I CCWGG 2 cut(s) 136, 360
PspFI CCCAGC 1 cut(s) 102
PspGI CCWGG 2 cut(s) 136, 360
PspN4I GGNNCC 2 cut(s) 135, 184
PspPI GGNCC 1 cut(s) 133
PspPPI RGGWCCY 1 cut(s) 133
PsuI RGATCY 1 cut(s) 329
SacI GAGCTC 1 cut(s) 231
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 2 cut(s) 44, 47
Sau3AI GATC 3 cut(s) 4, 283, 329
Sau96I GGNCC 1 cut(s) 133
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 2 cut(s) 138, 362
SduI GDGCHC 1 cut(s) 231
SetI ASST 3 cut(s) 211, 231, 341
SfcI CTRYAG 1 cut(s) 156
SinI GGWCC 1 cut(s) 133
SphI GCATGC 1 cut(s) 320
Sse9I AATT 1 cut(s) 66
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 2 cut(s) 136, 360
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 157
TaiI ACGT 1 cut(s) 341
TaqI TCGA 2 cut(s) 282, 290
TasI AATT 1 cut(s) 66
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TseI GCWGC 2 cut(s) 43, 46
TspDTI ATGAA 2 cut(s) 35, 313
TspGWI ACGGA 1 cut(s) 276
VpaK11BI GGWCC 1 cut(s) 133
XapI RAATTY 1 cut(s) 66
XceI RCATGY 1 cut(s) 320
Zsp2I ATGCAT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.