Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

11761462 .. 11761970

Gene Structure 509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCTGTCGTTTTACCATATTTCAGCAAGAACGGCCGTGGAAGTAGGAGTTGCTGGGGTGGTTGTCTTGAACCGTGGAGGCCGCCAACTCGATTACACTCCTTCCACTATTTCTGTCTTGGAAGAGGTGCAATCTATCTACTGCTACTTCATCATTTCTTTTTATCCTGTTACGAATTCAATTGGAAAGTTGTAGGAAAAGTTCCTCTTCTTTTCCATGGAGGAGTACGCCGAGGGACAGACGTCCAAGGCGTTAGCCCTCGGTGCACAAGCTGTTCTTGCCGGTTATCTACGGCCTTTCAGCAGTGTAACGGAAAGCGCGGAGTGAGACGGCGGGTGATCGAAATGCTCAAGGATGAGTTTGAGCTGATAATGGCCCTTTCTGGCTGTCTAGTGTCAAGGATATTACCAGGAGCCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009853 GO:0009987 GO:0010109 GO:0010204 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0023052 GO:0031323 GO:0031347 GO:0031349 GO:0035821 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050665 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0055114 GO:0065007 GO:0072593 GO:0080134 GO:0098542 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

141

Amino Acids

15.84

Weight (kDa)

9.76

Isoelectric Point (pI)

57.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	246
AccII	CGCG	1 cut(s)	321
AciI	CCGC	3 cut(s)	83, 321, 334
AcoI	YGGCCR	1 cut(s)	34
AcsI	RAATTY	1 cut(s)	176
AcyI	GRCGYC	1 cut(s)	243
AfaI	GTAC	1 cut(s)	228
AgsI	TTSAA	2 cut(s)	71, 181
AjnI	CCWGG	1 cut(s)	409
AluBI	AGCT	2 cut(s)	273, 367
AluI	AGCT	2 cut(s)	273, 367
Alw21I	GWGCWC	1 cut(s)	269
Alw26I	GTCTC	1 cut(s)	322
Alw44I	GTGCAC	1 cut(s)	265
AoxI	GGCC	4 cut(s)	34, 80, 294, 375
ApaLI	GTGCAC	1 cut(s)	265
ApoI	RAATTY	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	321
AspS9I	GGNCC	1 cut(s)	376
AsuHPI	GGTGA	1 cut(s)	349
BaeGI	GKGCMC	1 cut(s)	269
Bbv12I	GWGCWC	1 cut(s)	269
BceAI	ACGGC	4 cut(s)	21, 49, 309, 347
BciT130I	CCWGG	1 cut(s)	411
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	1 cut(s)	392
BisI	GCNGC	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	84
Bme1390I	CCNGG	1 cut(s)	411
BmgT120I	GGNCC	1 cut(s)	376
BmiI	GGNNCC	1 cut(s)	415
BmrFI	CCNGG	1 cut(s)	411
BoxI	GACNNNNGTC	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	335
BsaHI	GRCGYC	1 cut(s)	243
BsaJI	CCNNGG	6 cut(s)	37, 74, 217, 232, 247, 260
Bse118I	RCCGGY	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	411
BseDI	CCNNGG	6 cut(s)	37, 74, 217, 232, 247, 260
BseGI	GGATG	1 cut(s)	361
BseRI	GAGGAG	1 cut(s)	237
BseSI	GKGCMC	1 cut(s)	269
BseX3I	CGGCCG	1 cut(s)	34
BseYI	CCCAGC	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	321
Bsh1285I	CGRYCG	1 cut(s)	37
BshFI	GGCC	4 cut(s)	36, 82, 296, 377
BsiEI	CGRYCG	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	283
BslFI	GGGAC	1 cut(s)	250
BsmAI	GTCTC	1 cut(s)	322
BsmBI	CGTCTC	1 cut(s)	322
BsmFI	GGGAC	1 cut(s)	250
BsnI	GGCC	4 cut(s)	36, 82, 296, 377
Bsp1286I	GDGCHC	1 cut(s)	269
Bsp143I	GATC	1 cut(s)	339
Bsp19I	CCATGG	1 cut(s)	217
BspACI	CCGC	3 cut(s)	83, 321, 334
BspANI	GGCC	4 cut(s)	36, 82, 296, 377
BspFNI	CGCG	1 cut(s)	321
BspLI	GGNNCC	1 cut(s)	415
BsrFI	RCCGGY	1 cut(s)	282
BssAI	RCCGGY	1 cut(s)	282
BssECI	CCNNGG	6 cut(s)	37, 74, 217, 232, 247, 260
BssMI	GATC	1 cut(s)	339
BssNI	GRCGYC	1 cut(s)	243
BssT1I	CCWWGG	2 cut(s)	217, 247
Bst2UI	CCWGG	1 cut(s)	411
Bst4CI	ACNGT	1 cut(s)	75
Bst6I	CTCTTC	2 cut(s)	118, 213
BstACI	GRCGYC	1 cut(s)	243
BstDSI	CCRYGG	3 cut(s)	37, 74, 217
BstF5I	GGATG	1 cut(s)	361
BstFNI	CGCG	1 cut(s)	321
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	1 cut(s)	342
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	1 cut(s)	339
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 264, 279
BstNI	CCWGG	1 cut(s)	411
BstPAI	GACNNNNGTC	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	409
BstSLI	GKGCMC	1 cut(s)	269
BstUI	CGCG	1 cut(s)	321
BstZI	CGGCCG	1 cut(s)	34
BsuRI	GGCC	4 cut(s)	36, 82, 296, 377
BtgI	CCRYGG	3 cut(s)	37, 74, 217
BtsCI	GGATG	1 cut(s)	361
BtsI	GCAGTG	1 cut(s)	311
BtsIMutI	CAGTG	1 cut(s)	311
CfoI	GCGC	1 cut(s)	321
Cfr10I	RCCGGY	1 cut(s)	282
Cfr13I	GGNCC	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	227
CviAII	CATG	2 cut(s)	218, 418
CviQI	GTAC	1 cut(s)	227
DpnI	GATC	1 cut(s)	341
DpnII	GATC	1 cut(s)	339
EaeI	YGGCCR	1 cut(s)	34
EagI	CGGCCG	1 cut(s)	34
Eam1104I	CTCTTC	2 cut(s)	118, 213
EarI	CTCTTC	2 cut(s)	118, 213
EclXI	CGGCCG	1 cut(s)	34
Eco130I	CCWWGG	2 cut(s)	217, 247
Eco52I	CGGCCG	1 cut(s)	34
EcoRI	GAATTC	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	409
EcoT14I	CCWWGG	2 cut(s)	217, 247
ErhI	CCWWGG	2 cut(s)	217, 247
Esp3I	CGTCTC	1 cut(s)	322
FaeI	CATG	2 cut(s)	221, 421
FaiI	YATR	3 cut(s)	19, 219, 419
FalI	AAGNNNNNCTT	4 cut(s)	192, 224, 262, 294
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	2 cut(s)	217, 417
FauI	CCCGC	1 cut(s)	327
Fnu4HI	GCNGC	1 cut(s)	83
FokI	GGATG	1 cut(s)	368
Fsp4HI	GCNGC	1 cut(s)	83
FspBI	CTAG	1 cut(s)	392
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	1 cut(s)	83
GsaI	CCCAGC	1 cut(s)	58
HaeIII	GGCC	4 cut(s)	36, 82, 296, 377
HapII	CCGG	1 cut(s)	283
HhaI	GCGC	1 cut(s)	321
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	2 cut(s)	221, 421
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HpaII	CCGG	1 cut(s)	283
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188III	TCNNGA	1 cut(s)	68
Hpy8I	GTNNAC	1 cut(s)	267
HpyAV	CCTTC	1 cut(s)	112
HpyCH4III	ACNGT	1 cut(s)	75
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	2 cut(s)	131, 267
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 264, 279
HpySE526I	ACGT	1 cut(s)	243
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	2 cut(s)	221, 421
HspAI	GCGC	1 cut(s)	319
Kzo9I	GATC	1 cut(s)	339
LmnI	GCTCC	1 cut(s)	413
LpnPI	CCDG	5 cut(s)	40, 181, 296, 369, 396
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	2 cut(s)	170, 308
MalI	GATC	1 cut(s)	341
MboI	GATC	1 cut(s)	339
MboII	GAAGA	2 cut(s)	135, 200
MfeI	CAATTG	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	269
MluCI	AATT	2 cut(s)	176, 181
MnlI	CCTC	6 cut(s)	72, 119, 215, 216, 227, 270
MspI	CCGG	1 cut(s)	283
MspR9I	CCNGG	1 cut(s)	411
MunI	CAATTG	1 cut(s)	181
MvaI	CCWGG	1 cut(s)	411
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	3 cut(s)	33, 264, 279
NcoI	CCATGG	1 cut(s)	217
NdeII	GATC	1 cut(s)	339
NlaIII	CATG	2 cut(s)	221, 421
NlaIV	GGNNCC	1 cut(s)	415
NmeAIII	GCCGAG	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PkrI	GCNGC	1 cut(s)	84
PshAI	GACNNNNGTC	1 cut(s)	242
Psp6I	CCWGG	1 cut(s)	409
PspFI	CCCAGC	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	409
PspN4I	GGNNCC	1 cut(s)	415
PspPI	GGNCC	1 cut(s)	376
PsrI	GAACNNNNNNTAC	2 cut(s)	186, 218
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
SatI	GCNGC	1 cut(s)	83
Sau3AI	GATC	1 cut(s)	339
Sau96I	GGNCC	1 cut(s)	376
ScrFI	CCNGG	1 cut(s)	411
SduI	GDGCHC	1 cut(s)	269
SetI	ASST	4 cut(s)	130, 246, 275, 369
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	2 cut(s)	176, 181
SsiI	CCGC	3 cut(s)	83, 321, 334
SspMI	CTAG	1 cut(s)	392
StyD4I	CCNGG	1 cut(s)	409
StyI	CCWWGG	2 cut(s)	217, 247
TaaI	ACNGT	1 cut(s)	75
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	2 cut(s)	91, 342
TasI	AATT	2 cut(s)	176, 181
TauI	GCSGC	1 cut(s)	85
TscAI	CASTG	1 cut(s)	311
TspDTI	ATGAA	1 cut(s)	140
TspGWI	ACGGA	1 cut(s)	327
TspRI	CASTG	1 cut(s)	311
VneI	GTGCAC	1 cut(s)	265
XapI	RAATTY	1 cut(s)	176
XspI	CTAG	1 cut(s)	392
ZraI	GACGTC	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.