pycom17g14500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Reverse (-)
12048468 .. 12048689
222 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 222 bp
ATGCACTGCATTTTTCCAACTTACCCCAATATAACAGCTTTCCACAGCATTATATTGTTATCCTGGGGTGCCCCACTAATCCCTGCAGGCGGGTCCTGTTGCAGCCTCTTGAAGTCTCTCATCAGCCTCTTCATTACAAGAGTCGACGTTCCTAATTTGCTACCACCCATATATCATGAACCCAATTTAATAAACCGTATTTTAAGATTAACTATGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.17

Weight (kDa)

8.64

Isoelectric Point (pI)

61.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 68
AccI GTMKAC 1 cut(s) 144
AciI CCGC 1 cut(s) 90
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 1 cut(s) 112
AjnI CCWGG 1 cut(s) 62
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
Alw26I GTCTC 1 cut(s) 120
ApeKI GCWGC 1 cut(s) 102
AspS9I GGNCC 1 cut(s) 93
AvaII GGWCC 1 cut(s) 93
BaeGI GKGCMC 1 cut(s) 73
BanI GGYRCC 1 cut(s) 68
BbvI GCAGC 1 cut(s) 114
BciT130I CCWGG 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 120
BfmI CTRYAG 1 cut(s) 84
BisI GCNGC 1 cut(s) 103
BlsI GCNGC 1 cut(s) 104
Bme1390I CCNGG 1 cut(s) 64
Bme18I GGWCC 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 93
BmiI GGNNCC 2 cut(s) 70, 94
BmrFI CCNGG 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 63
Bsc4I CCNNNNNNNGG 1 cut(s) 89
BseBI CCWGG 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 63
BseLI CCNNNNNNNGG 1 cut(s) 89
BseSI GKGCMC 1 cut(s) 73
BseXI GCAGC 1 cut(s) 114
BshNI GGYRCC 1 cut(s) 68
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 73
BspACI CCGC 1 cut(s) 90
BspHI TCATGA 1 cut(s) 175
BspLI GGNNCC 2 cut(s) 70, 94
BspMAI CTGCAG 1 cut(s) 88
BspT107I GGYRCC 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 64
Bst4CI ACNGT 1 cut(s) 197
Bst6I CTCTTC 1 cut(s) 134
BstC8I GCNNGC 1 cut(s) 88
BstMAI GTCTC 1 cut(s) 120
BstNI CCWGG 1 cut(s) 64
BstSCI CCNGG 1 cut(s) 62
BstSFI CTRYAG 1 cut(s) 84
BstSLI GKGCMC 1 cut(s) 73
BstV1I GCAGC 1 cut(s) 114
BtsI GCAGTG 1 cut(s) 4
BtsIMutI CAGTG 1 cut(s) 4
Cac8I GCNNGC 1 cut(s) 88
CciI TCATGA 1 cut(s) 175
Cfr13I GGNCC 1 cut(s) 93
CviAII CATG 1 cut(s) 176
CviJI RGCY 3 cut(s) 38, 105, 126
CviKI_1 RGCY 3 cut(s) 38, 105, 126
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 93
EcoO109I RGGNCCY 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 62
EcoT22I ATGCAT 1 cut(s) 219
FaeI CATG 1 cut(s) 179
FaiI YATR 6 cut(s) 32, 53, 170, 172, 177, 215
FatI CATG 1 cut(s) 175
FauI CCCGC 1 cut(s) 83
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 1 cut(s) 103
Fsp4HI GCNGC 1 cut(s) 103
GluI GCNGC 1 cut(s) 103
Hin1II CATG 1 cut(s) 179
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 1 cut(s) 141
Hpy166II GTNNAC 1 cut(s) 145
Hpy188III TCNNGA 2 cut(s) 109, 176
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 1 cut(s) 149
HpyCH4III ACNGT 1 cut(s) 197
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 5 cut(s) 4, 9, 86, 102, 217
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 1 cut(s) 179
LpnPI CCDG 5 cut(s) 49, 72, 76, 96, 109
Lsp1109I GCAGC 1 cut(s) 114
MaeII ACGT 1 cut(s) 147
MboII GAAGA 1 cut(s) 121
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 2 cut(s) 154, 184
MlyI GAGTC 1 cut(s) 150
MmeI TCCRAC 1 cut(s) 41
MnlI CCTC 2 cut(s) 116, 137
Mph1103I ATGCAT 1 cut(s) 219
MseI TTAA 3 cut(s) 188, 203, 209
MspR9I CCNGG 1 cut(s) 64
MvaI CCWGG 1 cut(s) 64
NlaIII CATG 1 cut(s) 179
NlaIV GGNNCC 2 cut(s) 70, 94
NsiI ATGCAT 1 cut(s) 219
PagI TCATGA 1 cut(s) 175
PkrI GCNGC 1 cut(s) 104
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
PpuMI RGGWCCY 1 cut(s) 93
Psp5II RGGWCCY 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 62
PspGI CCWGG 1 cut(s) 62
PspN4I GGNNCC 2 cut(s) 70, 94
PspPI GGNCC 1 cut(s) 93
PspPPI RGGWCCY 1 cut(s) 93
PstI CTGCAG 1 cut(s) 88
SalI GTCGAC 1 cut(s) 143
SaqAI TTAA 3 cut(s) 188, 203, 209
SatI GCNGC 1 cut(s) 103
Sau96I GGNCC 1 cut(s) 93
SbfI CCTGCAGG 1 cut(s) 88
SchI GAGTC 1 cut(s) 150
ScrFI CCNGG 1 cut(s) 64
SdaI CCTGCAGG 1 cut(s) 88
SduI GDGCHC 1 cut(s) 73
SetI ASST 2 cut(s) 40, 150
SfcI CTRYAG 1 cut(s) 84
SgeI CNNG 9 cut(s) 75, 76, 95, 99, 103, 108, 121, 150, 188
SinI GGWCC 1 cut(s) 93
Sse8387I CCTGCAGG 1 cut(s) 88
Sse9I AATT 2 cut(s) 154, 184
SsiI CCGC 1 cut(s) 90
StyD4I CCNGG 1 cut(s) 62
TaaI ACNGT 1 cut(s) 197
TaiI ACGT 1 cut(s) 150
TaqI TCGA 1 cut(s) 144
TasI AATT 2 cut(s) 154, 184
Tru1I TTAA 3 cut(s) 188, 203, 209
Tru9I TTAA 3 cut(s) 188, 203, 209
TseI GCWGC 1 cut(s) 102
TspDTI ATGAA 2 cut(s) 121, 192
VpaK11BI GGWCC 1 cut(s) 93
XmiI GTMKAC 1 cut(s) 144
Zsp2I ATGCAT 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.