pycom17g14670
TCP Family

1-phosphatidylinositol-3-phosphate 5-kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Forward (+)
12343361 .. 12343600
240 bp
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UTR
Exon/CDS
Intron
pycom17g14670.1

Sequence Viewer

Length: 240 bp
ATGAGGCAGTATACATGGGATAAGCACCTTGAAACTTGGGTTAAAGCTTCGGGCATCCTCGGTGGGCCAAAGAATGCTTCTCCTACTGTAATTTCCCCAAAGCAGTACAAGAAAAGGTTCCGGAAAGCAATGACGACCTATTTTCTGATGGTTCCAGATCAGTGGTCTCCTCCGTCAATTGTTACAAGTACCTCTCAGTCTGATTTGGGCGAAGAGACAGGTGGTAATTCGGTTGAATGA

Protein Analysis

80

Amino Acids

8.88

Weight (kDa)

9.4

Isoelectric Point (pI)

43.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 11
AccIII TCCGGA 1 cut(s) 120
AfaI GTAC 2 cut(s) 107, 190
AgsI TTSAA 2 cut(s) 32, 236
AjuI GAANNNNNNNTTGG 2 cut(s) 61, 93
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
Alw26I GTCTC 2 cut(s) 171, 209
Aor13HI TCCGGA 1 cut(s) 120
AoxI GGCC 1 cut(s) 65
Asp700I GAANNNNTTC 1 cut(s) 116
AspS9I GGNCC 1 cut(s) 65
BccI CCATC 1 cut(s) 142
BcoDI GTCTC 2 cut(s) 171, 209
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 2 cut(s) 119, 153
BmsI GCATC 1 cut(s) 63
BsaI GGTCTC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 58
BsaWI WCCGGW 1 cut(s) 120
Bse3DI GCAATG 1 cut(s) 135
BseAI TCCGGA 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 1 cut(s) 54
BseMI GCAATG 1 cut(s) 135
BseMII CTCAG 1 cut(s) 209
BseRI GAGGAG 1 cut(s) 159
BshFI GGCC 1 cut(s) 67
BsiSI CCGG 1 cut(s) 121
BsmAI GTCTC 2 cut(s) 171, 209
BsmI GAATGC 1 cut(s) 79
BsnI GGCC 1 cut(s) 67
Bso31I GGTCTC 1 cut(s) 171
Bsp13I TCCGGA 1 cut(s) 120
Bsp143I GATC 1 cut(s) 157
BspANI GGCC 1 cut(s) 67
BspCNI CTCAG 1 cut(s) 208
BspEI TCCGGA 1 cut(s) 120
BspLI GGNNCC 2 cut(s) 119, 153
BspTNI GGTCTC 1 cut(s) 171
BsrDI GCAATG 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 1 cut(s) 157
BssNAI GTATAC 1 cut(s) 12
Bst1107I GTATAC 1 cut(s) 12
Bst4CI ACNGT 1 cut(s) 88
Bst6I CTCTTC 1 cut(s) 207
BstDEI CTNAG 1 cut(s) 195
BstF5I GGATG 1 cut(s) 54
BstKTI GATC 1 cut(s) 160
BstMAI GTCTC 2 cut(s) 171, 209
BstMBI GATC 1 cut(s) 157
BstXI CCANNNNNNTGG 1 cut(s) 162
BstZ17I GTATAC 1 cut(s) 12
BsuRI GGCC 1 cut(s) 67
BtsCI GGATG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 167
Cfr13I GGNCC 1 cut(s) 65
Csp6I GTAC 2 cut(s) 106, 189
CviAII CATG 1 cut(s) 15
CviJI RGCY 2 cut(s) 47, 67
CviKI_1 RGCY 2 cut(s) 47, 67
CviQI GTAC 2 cut(s) 106, 189
DdeI CTNAG 1 cut(s) 195
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Eco31I GGTCTC 1 cut(s) 171
FaeI CATG 1 cut(s) 18
FaiI YATR 2 cut(s) 12, 16
FatI CATG 1 cut(s) 14
FblI GTMKAC 1 cut(s) 11
FokI GGATG 1 cut(s) 41
HaeIII GGCC 1 cut(s) 67
HapII CCGG 1 cut(s) 121
Hin1II CATG 1 cut(s) 18
HindIII AAGCTT 1 cut(s) 45
HpaII CCGG 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 2 cut(s) 147, 202
Hpy188III TCNNGA 2 cut(s) 121, 155
Hpy8I GTNNAC 1 cut(s) 12
HpyCH4III ACNGT 1 cut(s) 88
HpyF3I CTNAG 1 cut(s) 195
Hsp92II CATG 1 cut(s) 18
Kpn2I TCCGGA 1 cut(s) 120
Kzo9I GATC 1 cut(s) 157
LpnPI CCDG 3 cut(s) 134, 168, 204
LweI GCATC 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 181
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 1 cut(s) 224
MfeI CAATTG 1 cut(s) 177
MluCI AATT 3 cut(s) 90, 177, 226
MnlI CCTC 3 cut(s) 68, 180, 202
MroI TCCGGA 1 cut(s) 120
MroXI GAANNNNTTC 1 cut(s) 116
MseI TTAA 1 cut(s) 42
MspI CCGG 1 cut(s) 121
MunI CAATTG 1 cut(s) 177
Mva1269I GAATGC 1 cut(s) 79
NdeII GATC 1 cut(s) 157
NlaIII CATG 1 cut(s) 18
NlaIV GGNNCC 2 cut(s) 119, 153
PctI GAATGC 1 cut(s) 79
PdmI GAANNNNTTC 1 cut(s) 116
PspN4I GGNNCC 2 cut(s) 119, 153
PspPI GGNCC 1 cut(s) 65
RsaI GTAC 2 cut(s) 107, 190
RsaNI GTAC 2 cut(s) 106, 189
SaqAI TTAA 1 cut(s) 42
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 1 cut(s) 65
SetI ASST 6 cut(s) 30, 49, 119, 140, 194, 223
SfaNI GCATC 1 cut(s) 63
Sse9I AATT 3 cut(s) 90, 177, 226
TaaI ACNGT 1 cut(s) 88
TasI AATT 3 cut(s) 90, 177, 226
TatI WGTACW 1 cut(s) 105
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 1 cut(s) 167
TspGWI ACGGA 1 cut(s) 162
TspRI CASTG 1 cut(s) 167
XmiI GTMKAC 1 cut(s) 11
XmnI GAANNNNTTC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.