pycom17g14810

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Forward (+)
12537340 .. 12538392
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 708 bp
ATGATGACCGTGGAAGAGAAGCCAGATGTGACATATAATGATGTTGGTGGATGTAAGGAGCAGATTGAAAAGATGAGAGAAGTTGTTGAGCTGCCTATGCTTCACCCTGAGAAATTTGTGAAGCTCGGGATCGATCCACCTAAGGGTGTTCTCTGTTATGGGCCTCCAGGAACTGGTAAAACTCTTTTGGCTAGGGCTGTCGCGAATAGAACTGATGCTTGCTTCATTCGTGTGATTGGGAGTGAGCTTGTTCAAAAATACGTTGGTGAGGGAGCTCGGATGGTCAGAGAACTTTTTCAGATGGCGCGCTCAAAGAAGGCCTGTATTGTGTTTTTCGATGAAGTGGATGCGATTGGAGGAGCTCGGTTTGATGATGGTGTGGGCGGAGATAATGAAGTTCAGAGGACTATGCTGGAAATTGTGAATCAGTTGGATGGCTTTGATGCTCGTGGAAATATTAAAGTCTTGATGGCAACAAACAGGCCTGATACGCTGGACCCAGCCCTACTGCGGCCAGGACGGTTGGATAGGAAGGTCGAGTTCGGCCTTCCCGACTTGGAGAGTCGGACACAAATCTTCAAAATCCATACAAGAACAATGAATTGTGAAAGGGACATTCGGTTTGAACTGTTGGCTCGTCTCTGCCCAAATTCAACTGGTAAGGATGCTTTCTATACCATTGATAAACAAAATGTCATTGTTACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

236

Amino Acids

26.33

Weight (kDa)

6.21

Isoelectric Point (pI)

24.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 50 - 183 6.1e-41 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 173
AccII CGCG 2 cut(s) 203, 307
AciI CCGC 2 cut(s) 384, 511
AclWI GGATC 2 cut(s) 128, 137
AcoI YGGCCR 1 cut(s) 512
AcsI RAATTY 2 cut(s) 113, 649
AfiI CCNNNNNNNGG 3 cut(s) 143, 173, 510
AgsI TTSAA 5 cut(s) 68, 254, 580, 626, 654
AjnI CCWGG 2 cut(s) 166, 514
AluBI AGCT 5 cut(s) 91, 124, 247, 275, 362
AluI AGCT 5 cut(s) 91, 124, 247, 275, 362
Alw21I GWGCWC 2 cut(s) 277, 364
Alw26I GTCTC 1 cut(s) 644
AlwI GGATC 2 cut(s) 128, 137
AlwNI CAGNNNCTG 1 cut(s) 173
Ama87I CYCGRG 1 cut(s) 125
AoxI GGCC 5 cut(s) 161, 318, 482, 512, 544
ApeKI GCWGC 1 cut(s) 91
ApoI RAATTY 2 cut(s) 113, 649
ArsI GACNNNNNNTTYG 2 cut(s) 605, 637
Asp700I GAANNNNTTC 1 cut(s) 294
AspLEI GCGC 2 cut(s) 307, 309
AspS9I GGNCC 2 cut(s) 161, 496
AsuHPI GGTGA 2 cut(s) 95, 278
AvaI CYCGRG 1 cut(s) 125
AvaII GGWCC 1 cut(s) 496
AxyI CCTNAGG 1 cut(s) 141
BanII GRGCYC 2 cut(s) 277, 364
BauI CACGAG 1 cut(s) 447
Bbv12I GWGCWC 2 cut(s) 277, 364
BbvI GCAGC 1 cut(s) 78
BccI CCATC 5 cut(s) 274, 295, 368, 428, 463
BciT130I CCWGG 2 cut(s) 168, 516
BcoDI GTCTC 1 cut(s) 644
BfaI CTAG 2 cut(s) 192, 706
BisI GCNGC 2 cut(s) 92, 512
BlsI GCNGC 2 cut(s) 93, 513
Bme1390I CCNGG 2 cut(s) 168, 516
Bme18I GGWCC 1 cut(s) 496
BmeT110I CYCGRG 1 cut(s) 125
BmgT120I GGNCC 2 cut(s) 161, 496
BmiI GGNNCC 1 cut(s) 498
BmrFI CCNGG 2 cut(s) 168, 516
BmsI GCATC 4 cut(s) 205, 337, 433, 655
BpmI CTGGAG 1 cut(s) 150
Bsa29I ATCGAT 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 9
Bsc4I CCNNNNNNNGG 3 cut(s) 143, 173, 510
Bse1I ACTGG 2 cut(s) 178, 661
Bse21I CCTNAGG 1 cut(s) 141
BseBI CCWGG 2 cut(s) 168, 516
BseCI ATCGAT 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 5 cut(s) 56, 285, 352, 439, 670
BseLI CCNNNNNNNGG 3 cut(s) 143, 173, 510
BseMII CTCAG 1 cut(s) 99
BseNI ACTGG 2 cut(s) 178, 661
BsePI GCGCGC 1 cut(s) 305
BseRI GAGGAG 1 cut(s) 372
BseXI GCAGC 1 cut(s) 78
BseYI CCCAGC 1 cut(s) 499
Bsh1236I CGCG 2 cut(s) 203, 307
BshFI GGCC 5 cut(s) 163, 320, 484, 514, 546
BshVI ATCGAT 1 cut(s) 132
BsiHKAI GWGCWC 2 cut(s) 277, 364
BsiHKCI CYCGRG 1 cut(s) 125
BslFI GGGAC 1 cut(s) 626
BslI CCNNNNNNNGG 3 cut(s) 143, 173, 510
BsmAI GTCTC 1 cut(s) 644
BsmBI CGTCTC 1 cut(s) 644
BsmFI GGGAC 1 cut(s) 626
BsnI GGCC 5 cut(s) 163, 320, 484, 514, 546
BsoBI CYCGRG 1 cut(s) 125
Bsp1286I GDGCHC 2 cut(s) 277, 364
Bsp143I GATC 2 cut(s) 129, 133
Bsp68I TCGCGA 1 cut(s) 203
BspACI CCGC 2 cut(s) 384, 511
BspANI GGCC 5 cut(s) 163, 320, 484, 514, 546
BspCNI CTCAG 1 cut(s) 100
BspDI ATCGAT 1 cut(s) 132
BspFNI CGCG 2 cut(s) 203, 307
BspLI GGNNCC 1 cut(s) 498
BspPI GGATC 2 cut(s) 128, 137
BsrI ACTGG 2 cut(s) 178, 661
BssECI CCNNGG 1 cut(s) 9
BssHII GCGCGC 1 cut(s) 305
BssMI GATC 2 cut(s) 129, 133
BssSI CACGAG 1 cut(s) 447
Bst2BI CACGAG 1 cut(s) 447
Bst2UI CCWGG 2 cut(s) 168, 516
Bst4CI ACNGT 3 cut(s) 10, 522, 630
Bst6I CTCTTC 1 cut(s) 9
BstC8I GCNNGC 2 cut(s) 220, 307
BstDEI CTNAG 2 cut(s) 108, 141
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 5 cut(s) 56, 285, 352, 439, 670
BstFNI CGCG 2 cut(s) 203, 307
BstHHI GCGC 2 cut(s) 307, 309
BstKTI GATC 2 cut(s) 132, 136
BstMAI GTCTC 1 cut(s) 644
BstMBI GATC 2 cut(s) 129, 133
BstMWI GCNNNNNNNGC 2 cut(s) 97, 490
BstNI CCWGG 2 cut(s) 168, 516
BstSCI CCNGG 2 cut(s) 166, 514
BstUI CGCG 2 cut(s) 203, 307
BstV1I GCAGC 1 cut(s) 78
Bsu15I ATCGAT 1 cut(s) 132
Bsu36I CCTNAGG 1 cut(s) 141
BsuRI GGCC 5 cut(s) 163, 320, 484, 514, 546
BsuTUI ATCGAT 1 cut(s) 132
BtgI CCRYGG 1 cut(s) 9
BtsCI GGATG 5 cut(s) 56, 285, 352, 439, 670
BtuMI TCGCGA 1 cut(s) 203
Cac8I GCNNGC 2 cut(s) 220, 307
CaiI CAGNNNCTG 1 cut(s) 173
CfoI GCGC 2 cut(s) 307, 309
Cfr13I GGNCC 2 cut(s) 161, 496
ClaI ATCGAT 1 cut(s) 132
DdeI CTNAG 2 cut(s) 108, 141
DpnI GATC 2 cut(s) 131, 135
DpnII GATC 2 cut(s) 129, 133
EaeI YGGCCR 1 cut(s) 512
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
EciI GGCGGA 1 cut(s) 399
Ecl136II GAGCTC 2 cut(s) 275, 362
Eco147I AGGCCT 2 cut(s) 320, 484
Eco24I GRGCYC 2 cut(s) 277, 364
Eco47I GGWCC 1 cut(s) 496
Eco53kI GAGCTC 2 cut(s) 275, 362
Eco81I CCTNAGG 1 cut(s) 141
Eco88I CYCGRG 1 cut(s) 125
EcoICRI GAGCTC 2 cut(s) 275, 362
EcoRII CCWGG 2 cut(s) 166, 514
EcoT38I GRGCYC 2 cut(s) 277, 364
Esp3I CGTCTC 1 cut(s) 644
FaiI YATR 7 cut(s) 34, 36, 98, 159, 410, 588, 675
FaqI GGGAC 1 cut(s) 626
Fnu4HI GCNGC 2 cut(s) 92, 512
FokI GGATG 5 cut(s) 63, 292, 359, 446, 677
FriOI GRGCYC 2 cut(s) 277, 364
Fsp4HI GCNGC 2 cut(s) 92, 512
FspBI CTAG 2 cut(s) 192, 706
GlaI GCGC 2 cut(s) 306, 308
GluI GCNGC 2 cut(s) 92, 512
GsaI CCCAGC 1 cut(s) 503
GsuI CTGGAG 1 cut(s) 150
HaeIII GGCC 5 cut(s) 163, 320, 484, 514, 546
HhaI GCGC 2 cut(s) 307, 309
Hin6I GCGC 2 cut(s) 305, 307
HinP1I GCGC 2 cut(s) 305, 307
HinfI GANTC 2 cut(s) 424, 562
HphI GGTGA 2 cut(s) 95, 278
Hpy188I TCNGA 5 cut(s) 279, 287, 300, 402, 567
Hpy188III TCNNGA 4 cut(s) 127, 202, 466, 551
HpyAV CCTTC 3 cut(s) 310, 526, 557
HpyCH4III ACNGT 3 cut(s) 10, 522, 630
HpyCH4IV ACGT 1 cut(s) 261
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 490
HpyF3I CTNAG 2 cut(s) 108, 141
HpySE526I ACGT 1 cut(s) 261
HspAI GCGC 2 cut(s) 305, 307
Kzo9I GATC 2 cut(s) 129, 133
LmnI GCTCC 3 cut(s) 58, 272, 359
Lsp1109I GCAGC 1 cut(s) 78
LweI GCATC 4 cut(s) 205, 337, 433, 655
MaeI CTAG 2 cut(s) 192, 706
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 2 cut(s) 28, 700
MalI GATC 2 cut(s) 131, 135
MboI GATC 2 cut(s) 129, 133
MboII GAAGA 2 cut(s) 26, 568
MhlI GDGCHC 2 cut(s) 277, 364
MluCI AATT 4 cut(s) 113, 417, 601, 649
MlyI GAGTC 1 cut(s) 571
MmeI TCCRAC 3 cut(s) 411, 504, 545
MnlI CCTC 4 cut(s) 174, 262, 350, 396
MroXI GAANNNNTTC 1 cut(s) 294
MseI TTAA 1 cut(s) 459
MslI CAYNNNNRTG 1 cut(s) 230
MspR9I CCNGG 2 cut(s) 168, 516
MvaI CCWGG 2 cut(s) 168, 516
MvnI CGCG 2 cut(s) 203, 307
MwoI GCNNNNNNNGC 2 cut(s) 97, 490
NdeII GATC 2 cut(s) 129, 133
NlaIV GGNNCC 1 cut(s) 498
NmuCI GTSAC 1 cut(s) 28
NruI TCGCGA 1 cut(s) 203
PauI GCGCGC 1 cut(s) 305
PceI AGGCCT 2 cut(s) 320, 484
PcsI WCGNNNNNNNCGW 1 cut(s) 549
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 1 cut(s) 424
PflMI CCANNNNNTGG 1 cut(s) 173
PfoI TCCNGGA 1 cut(s) 166
PkrI GCNGC 2 cut(s) 93, 513
PleI GAGTC 1 cut(s) 570
PpsI GAGTC 1 cut(s) 570
Psp124BI GAGCTC 2 cut(s) 277, 364
Psp6I CCWGG 2 cut(s) 166, 514
PspFI CCCAGC 1 cut(s) 499
PspGI CCWGG 2 cut(s) 166, 514
PspN4I GGNNCC 1 cut(s) 498
PspPI GGNCC 2 cut(s) 161, 496
PstNI CAGNNNCTG 1 cut(s) 173
PteI GCGCGC 1 cut(s) 305
RruI TCGCGA 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 230
SacI GAGCTC 2 cut(s) 277, 364
SaqAI TTAA 1 cut(s) 459
SatI GCNGC 2 cut(s) 92, 512
Sau3AI GATC 2 cut(s) 129, 133
Sau96I GGNCC 2 cut(s) 161, 496
SchI GAGTC 1 cut(s) 571
ScrFI CCNGG 2 cut(s) 168, 516
SduI GDGCHC 2 cut(s) 277, 364
SetI ASST 9 cut(s) 93, 126, 142, 249, 264, 277, 364, 537, 707
SfaNI GCATC 4 cut(s) 205, 337, 433, 655
SinI GGWCC 1 cut(s) 496
SmiMI CAYNNNNRTG 1 cut(s) 230
Sse9I AATT 4 cut(s) 113, 417, 601, 649
SseBI AGGCCT 2 cut(s) 320, 484
SsiI CCGC 2 cut(s) 384, 511
SspI AATATT 1 cut(s) 457
SspMI CTAG 2 cut(s) 192, 706
SstI GAGCTC 2 cut(s) 277, 364
StuI AGGCCT 2 cut(s) 320, 484
StyD4I CCNGG 2 cut(s) 166, 514
TaaI ACNGT 3 cut(s) 10, 522, 630
TaiI ACGT 1 cut(s) 264
TaqI TCGA 3 cut(s) 132, 336, 537
TasI AATT 4 cut(s) 113, 417, 601, 649
TauI GCSGC 1 cut(s) 514
TfiI GAWTC 1 cut(s) 424
Tru1I TTAA 1 cut(s) 459
Tru9I TTAA 1 cut(s) 459
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 1 cut(s) 91
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 4 cut(s) 214, 354, 408, 614
Van91I CCANNNNNTGG 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 496
XapI RAATTY 2 cut(s) 113, 649
XmnI GAANNNNTTC 1 cut(s) 294
XspI CTAG 2 cut(s) 192, 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.