Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

12952858 .. 12953661

Gene Structure 804 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGTCGACAAACTGGGTCGTAAGCTTTCAATGTCAGCCATGTTCTTCATATGTTGCATTTTTCTACTCCCCTTGGTTGTCCATCAGTCTCAGGGCTTGACCACTAGTCTTCTGTTTGGAGCTCGCATATGCATCACAGCGACCTTCACAATAGTCTACATATACGCCCCGGAGATATACCCAACCTCAATCCGAACAACTGGCGTTGGAATCGCAAGTTCAATGGGAAGAATTGGCGGAATGATCTGCCCTCTTGTGGCAGTAGGTTTGGTACATGGATGCCATCAAACAGCATCGATTTTGCTGTTTGAGATTGTAATTTTTCTTTCGGGGGTATGCGTGTTGCTCTTTCCGTTTGAAACAATGGGTCGTGAATTGAGCGATAGTATATCGGATTCAATGGATCAAATCAAAACCAGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006855 GO:0008028 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0008519 GO:0015075 GO:0015101 GO:0015238 GO:0015318 GO:0015651 GO:0015695 GO:0015696 GO:0015697 GO:0015711 GO:0015718 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0034220 GO:0035461 GO:0042221 GO:0042493 GO:0044425 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051180 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0090416 GO:0090417 GO:0090482 GO:0098655 GO:0098656 GO:1903825 GO:1905039 GO:2001142 GO:2001143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 Sugar_tr

Protein Analysis

142

Amino Acids

15.27

Weight (kDa)

7.62

Isoelectric Point (pI)

30.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	1 - 119	1.8e-11	Major Facilitator Superfamily
Sugar_tr	PF00083	2 - 127	1.7e-08	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	6, 156
AciI	CCGC	1 cut(s)	237
AclWI	GGATC	1 cut(s)	411
AfaI	GTAC	1 cut(s)	273
AfiI	CCNNNNNNNGG	1 cut(s)	256
AgsI	TTSAA	4 cut(s)	30, 222, 359, 399
AhdI	GACNNNNNGTC	1 cut(s)	105
AhlI	ACTAGT	1 cut(s)	104
AluBI	AGCT	2 cut(s)	25, 122
AluI	AGCT	2 cut(s)	25, 122
Alw21I	GWGCWC	1 cut(s)	124
Alw26I	GTCTC	1 cut(s)	93
AlwI	GGATC	1 cut(s)	411
AsuC2I	CCSGG	1 cut(s)	170
BanII	GRGCYC	1 cut(s)	124
BbsI	GAAGAC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	124
BccI	CCATC	2 cut(s)	90, 291
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	93
BcuI	ACTAGT	1 cut(s)	104
BfaI	CTAG	1 cut(s)	105
Bme1390I	CCNGG	1 cut(s)	170
BmeRI	GACNNNNNGTC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	170
BmrI	ACTGGG	1 cut(s)	23
BmsI	GCATC	3 cut(s)	141, 269, 302
BmuI	ACTGGG	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	101
BpuMI	CCSGG	1 cut(s)	170
Bsa29I	ATCGAT	1 cut(s)	296
BsaJI	CCNNGG	2 cut(s)	72, 168
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse1I	ACTGG	3 cut(s)	18, 205, 417
BseCI	ATCGAT	1 cut(s)	296
BseDI	CCNNGG	2 cut(s)	72, 168
BseGI	GGATG	1 cut(s)	284
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	3 cut(s)	18, 205, 417
BshVI	ATCGAT	1 cut(s)	296
BsiHKAI	GWGCWC	1 cut(s)	124
BsiSI	CCGG	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	256
BsmAI	GTCTC	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp143I	GATC	2 cut(s)	243, 403
BspACI	CCGC	1 cut(s)	237
BspCNI	CTCAG	1 cut(s)	103
BspDI	ATCGAT	1 cut(s)	296
BspPI	GGATC	1 cut(s)	411
BsrI	ACTGG	3 cut(s)	18, 205, 417
BssECI	CCNNGG	2 cut(s)	72, 168
BssMI	GATC	2 cut(s)	243, 403
BssT1I	CCWWGG	1 cut(s)	72
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	284
BstKTI	GATC	2 cut(s)	246, 406
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	2 cut(s)	243, 403
BstSCI	CCNGG	1 cut(s)	168
BstV2I	GAAGAC	1 cut(s)	101
Bsu15I	ATCGAT	1 cut(s)	296
BsuTUI	ATCGAT	1 cut(s)	296
BtsCI	GGATG	1 cut(s)	284
Cac8I	GCNNGC	1 cut(s)	124
ClaI	ATCGAT	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	2 cut(s)	40, 275
CviJI	RGCY	4 cut(s)	25, 38, 96, 122
CviKI_1	RGCY	4 cut(s)	25, 38, 96, 122
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	2 cut(s)	245, 405
DpnII	GATC	2 cut(s)	243, 403
DriI	GACNNNNNGTC	1 cut(s)	105
Eam1105I	GACNNNNNGTC	1 cut(s)	105
EciI	GGCGGA	1 cut(s)	252
Ecl136II	GAGCTC	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	122
EcoICRI	GAGCTC	1 cut(s)	122
EcoT14I	CCWWGG	1 cut(s)	72
EcoT22I	ATGCAT	1 cut(s)	134
EcoT38I	GRGCYC	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	2 cut(s)	43, 278
FatI	CATG	2 cut(s)	39, 274
FauNDI	CATATG	2 cut(s)	50, 128
FblI	GTMKAC	2 cut(s)	6, 156
FokI	GGATG	1 cut(s)	291
FriOI	GRGCYC	1 cut(s)	124
FspBI	CTAG	1 cut(s)	105
HapII	CCGG	1 cut(s)	170
Hin1II	CATG	2 cut(s)	43, 278
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	2 cut(s)	210, 395
HpaII	CCGG	1 cut(s)	170
Hpy166II	GTNNAC	2 cut(s)	7, 157
Hpy188I	TCNGA	2 cut(s)	194, 394
Hpy188III	TCNNGA	1 cut(s)	371
Hpy8I	GTNNAC	2 cut(s)	7, 157
HpyAV	CCTTC	1 cut(s)	154
HpyCH4V	TGCA	2 cut(s)	57, 132
HpyF3I	CTNAG	1 cut(s)	90
Hsp92II	CATG	2 cut(s)	43, 278
Kzo9I	GATC	2 cut(s)	243, 403
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	3 cut(s)	77, 183, 186
LweI	GCATC	3 cut(s)	141, 269, 302
MaeI	CTAG	1 cut(s)	105
MalI	GATC	2 cut(s)	245, 405
MboI	GATC	2 cut(s)	243, 403
MboII	GAAGA	3 cut(s)	37, 101, 240
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	3 cut(s)	231, 318, 374
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	2 cut(s)	196, 261
Mph1103I	ATGCAT	1 cut(s)	134
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	170
NciI	CCSGG	1 cut(s)	170
NdeI	CATATG	2 cut(s)	50, 128
NdeII	GATC	2 cut(s)	243, 403
NlaIII	CATG	2 cut(s)	43, 278
NsiI	ATGCAT	1 cut(s)	134
PfeI	GAWTC	2 cut(s)	210, 395
Psp124BI	GAGCTC	1 cut(s)	124
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
SacI	GAGCTC	1 cut(s)	124
SalI	GTCGAC	1 cut(s)	5
Sau3AI	GATC	2 cut(s)	243, 403
ScrFI	CCNGG	1 cut(s)	170
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	5 cut(s)	27, 124, 146, 188, 268
SfaNI	GCATC	3 cut(s)	141, 269, 302
SpeI	ACTAGT	1 cut(s)	104
Sse9I	AATT	3 cut(s)	231, 318, 374
SsiI	CCGC	1 cut(s)	237
SspMI	CTAG	1 cut(s)	105
SstI	GAGCTC	1 cut(s)	124
StyD4I	CCNGG	1 cut(s)	168
StyI	CCWWGG	1 cut(s)	72
TaqI	TCGA	2 cut(s)	6, 296
TasI	AATT	3 cut(s)	231, 318, 374
TfiI	GAWTC	2 cut(s)	210, 395
TspDTI	ATGAA	1 cut(s)	37
TspGWI	ACGGA	1 cut(s)	342
XmiI	GTMKAC	2 cut(s)	6, 156
XspI	CTAG	1 cut(s)	105
Zsp2I	ATGCAT	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.