Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

13512582 .. 13513608

Gene Structure 1027 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGCTTCCTTACAGTACATGTTACTATTTCATGTATGAGAAATTGAAGAAATCCTACTGTCAAGCAAAGAATAAAGAGTCTCTTAACCGTCCTGAGATGCTACTGGTTGGAGCTCTTGCAGGTTTTACGGCTAGCACAATCAGCTTTCCATTGGAGGTGGCCAGGAAACGGCTGATGGTTGGAGCTTTGAAAGGCAAGTGCCCACCGCACATGTTAGCAGCACTTTCAGAAGTCATCCGGGAAGAAGGTTTGCGGGGACTTTACAGAGGGTGGGGTGCAAGCTGCTTGAAGGTCATGCCATCCTCCGGCATCACCTGGATGTTTTATGAAGCTTGGAAGGACATATTACTTGTTCAGGGACATACCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0015711 GO:0015748 GO:0015780 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

124

Amino Acids

13.89

Weight (kDa)

9.36

Isoelectric Point (pI)

35.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	32 - 117	3.8e-22	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	370
Acc36I	ACCTGC	1 cut(s)	110
AciI	CCGC	2 cut(s)	206, 253
AcoI	YGGCCR	1 cut(s)	159
AfaI	GTAC	1 cut(s)	16
AfiI	CCNNNNNNNGG	2 cut(s)	168, 305
AflIII	ACRYGT	2 cut(s)	17, 210
AgsI	TTSAA	3 cut(s)	46, 190, 289
AjnI	CCWGG	2 cut(s)	161, 314
AluBI	AGCT	5 cut(s)	113, 144, 185, 282, 332
AluI	AGCT	5 cut(s)	113, 144, 185, 282, 332
Alw21I	GWGCWC	1 cut(s)	115
Alw26I	GTCTC	1 cut(s)	84
AoxI	GGCC	1 cut(s)	159
ApeKI	GCWGC	2 cut(s)	218, 282
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	304
AsuNHI	GCTAGC	1 cut(s)	131
BaeGI	GKGCMC	1 cut(s)	203
BalI	TGGCCA	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	115
BarI	GAAGNNNNNNTAC	2 cut(s)	38, 70
Bbv12I	GWGCWC	1 cut(s)	115
BbvI	GCAGC	2 cut(s)	230, 269
BccI	CCATC	2 cut(s)	169, 307
BceAI	ACGGC	2 cut(s)	144, 185
BciT130I	CCWGG	2 cut(s)	163, 316
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	1 cut(s)	84
BfaI	CTAG	1 cut(s)	132
BfuAI	ACCTGC	1 cut(s)	110
BisI	GCNGC	2 cut(s)	219, 283
BlsI	GCNGC	2 cut(s)	220, 284
Bme1390I	CCNGG	3 cut(s)	163, 239, 316
BmrFI	CCNGG	3 cut(s)	163, 239, 316
BmsI	GCATC	2 cut(s)	87, 318
BmtI	GCTAGC	1 cut(s)	135
BpuMI	CCSGG	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 305
Bse1I	ACTGG	1 cut(s)	108
BseBI	CCWGG	2 cut(s)	163, 316
BseGI	GGATG	3 cut(s)	234, 299, 324
BseLI	CCNNNNNNNGG	2 cut(s)	168, 305
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	1 cut(s)	108
BseSI	GKGCMC	1 cut(s)	203
BseXI	GCAGC	2 cut(s)	230, 269
BshFI	GGCC	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	115
BsiSI	CCGG	2 cut(s)	238, 306
BslFI	GGGAC	1 cut(s)	270
BslI	CCNNNNNNNGG	2 cut(s)	168, 305
BsmAI	GTCTC	1 cut(s)	84
BsmFI	GGGAC	1 cut(s)	270
BsnI	GGCC	1 cut(s)	161
Bsp1286I	GDGCHC	2 cut(s)	115, 203
BspACI	CCGC	2 cut(s)	206, 253
BspANI	GGCC	1 cut(s)	161
BspCNI	CTCAG	1 cut(s)	85
BspMI	ACCTGC	1 cut(s)	110
BspOI	GCTAGC	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	108
Bst2UI	CCWGG	2 cut(s)	163, 316
Bst4CI	ACNGT	3 cut(s)	14, 59, 89
BstC8I	GCNNGC	2 cut(s)	133, 280
BstDEI	CTNAG	1 cut(s)	93
BstF5I	GGATG	3 cut(s)	234, 299, 324
BstMAI	GTCTC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	1 cut(s)	141
BstNI	CCWGG	2 cut(s)	163, 316
BstNSI	RCATGY	2 cut(s)	21, 214
BstSCI	CCNGG	3 cut(s)	161, 237, 314
BstSLI	GKGCMC	1 cut(s)	203
BstV1I	GCAGC	2 cut(s)	230, 269
BsuRI	GGCC	1 cut(s)	161
BtsCI	GGATG	3 cut(s)	234, 299, 324
BveI	ACCTGC	1 cut(s)	110
Cac8I	GCNNGC	2 cut(s)	133, 280
Csp6I	GTAC	1 cut(s)	15
CviAII	CATG	4 cut(s)	18, 31, 211, 295
CviJI	RGCY	8 cut(s)	113, 131, 144, 161, 172, 185, 282, 332
CviKI_1	RGCY	8 cut(s)	113, 131, 144, 161, 172, 185, 282, 332
CviQI	GTAC	1 cut(s)	15
DdeI	CTNAG	1 cut(s)	93
EaeI	YGGCCR	1 cut(s)	159
Ecl136II	GAGCTC	1 cut(s)	113
Eco24I	GRGCYC	1 cut(s)	115
Eco53kI	GAGCTC	1 cut(s)	113
EcoICRI	GAGCTC	1 cut(s)	113
EcoRII	CCWGG	2 cut(s)	161, 314
EcoT38I	GRGCYC	1 cut(s)	115
FaeI	CATG	4 cut(s)	21, 34, 214, 298
FaiI	YATR	9 cut(s)	19, 32, 36, 212, 296, 327, 344, 363, 370
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FaqI	GGGAC	1 cut(s)	270
FatI	CATG	4 cut(s)	17, 30, 210, 294
FauI	CCCGC	1 cut(s)	246
Fnu4HI	GCNGC	2 cut(s)	219, 283
FokI	GGATG	3 cut(s)	221, 286, 331
FriOI	GRGCYC	1 cut(s)	115
Fsp4HI	GCNGC	2 cut(s)	219, 283
FspBI	CTAG	1 cut(s)	132
GluI	GCNGC	2 cut(s)	219, 283
HaeIII	GGCC	1 cut(s)	161
HapII	CCGG	2 cut(s)	238, 306
Hin1II	CATG	4 cut(s)	21, 34, 214, 298
HindIII	AAGCTT	1 cut(s)	330
HinfI	GANTC	1 cut(s)	77
HpaII	CCGG	2 cut(s)	238, 306
HphI	GGTGA	1 cut(s)	304
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	1 cut(s)	92
HpyAV	CCTTC	3 cut(s)	239, 283, 331
HpyCH4III	ACNGT	3 cut(s)	14, 59, 89
HpyCH4V	TGCA	2 cut(s)	119, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	141
HpyF3I	CTNAG	1 cut(s)	93
Hsp92II	CATG	4 cut(s)	21, 34, 214, 298
LmnI	GCTCC	2 cut(s)	110, 182
Lsp1109I	GCAGC	2 cut(s)	230, 269
LweI	GCATC	2 cut(s)	87, 318
MaeI	CTAG	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	20
MboII	GAAGA	2 cut(s)	58, 254
MhlI	GDGCHC	2 cut(s)	115, 203
MlsI	TGGCCA	1 cut(s)	161
MluCI	AATT	1 cut(s)	41
MluNI	TGGCCA	1 cut(s)	161
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	2 cut(s)	88, 160
MnlI	CCTC	3 cut(s)	148, 260, 313
Mox20I	TGGCCA	1 cut(s)	161
MscI	TGGCCA	1 cut(s)	161
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	1 cut(s)	317
Msp20I	TGGCCA	1 cut(s)	161
MspI	CCGG	2 cut(s)	238, 306
MspR9I	CCNGG	3 cut(s)	163, 239, 316
MvaI	CCWGG	2 cut(s)	163, 316
MwoI	GCNNNNNNNGC	1 cut(s)	141
NciI	CCSGG	1 cut(s)	239
NheI	GCTAGC	1 cut(s)	131
NlaIII	CATG	4 cut(s)	21, 34, 214, 298
NspI	RCATGY	2 cut(s)	21, 214
PciI	ACATGT	2 cut(s)	17, 210
PfoI	TCCNGGA	1 cut(s)	237
PkrI	GCNGC	2 cut(s)	220, 284
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PscI	ACATGT	2 cut(s)	17, 210
PsiI	TTATAA	1 cut(s)	370
Psp124BI	GAGCTC	1 cut(s)	115
Psp6I	CCWGG	2 cut(s)	161, 314
PspGI	CCWGG	2 cut(s)	161, 314
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
RseI	CAYNNNNRTG	1 cut(s)	317
SacI	GAGCTC	1 cut(s)	115
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	2 cut(s)	219, 283
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	3 cut(s)	163, 239, 316
SduI	GDGCHC	2 cut(s)	115, 203
SfaNI	GCATC	2 cut(s)	87, 318
SmiMI	CAYNNNNRTG	1 cut(s)	317
Sse9I	AATT	1 cut(s)	41
SsiI	CCGC	2 cut(s)	206, 253
SspMI	CTAG	1 cut(s)	132
SstI	GAGCTC	1 cut(s)	115
StyD4I	CCNGG	3 cut(s)	161, 237, 314
TaaI	ACNGT	3 cut(s)	14, 59, 89
TasI	AATT	1 cut(s)	41
TatI	WGTACW	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TseI	GCWGC	2 cut(s)	218, 282
TspDTI	ATGAA	2 cut(s)	19, 342
XceI	RCATGY	2 cut(s)	21, 214
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.