Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

13631575 .. 13633974

Gene Structure 2400 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTCACAAAGTTTTTCTGGTGGGAGGCTGGATACTGGAATACAATGGATATTGCACATCGATCGAGCGGGATTTTATATTTGCTGGGGTTGCTTGGTCTGGGTTCCATCTATTTATACTTCTCCCGGCATGTACCTGGTCAACCATCCTATAAATCTTGGAACTCAGCTAGCACTTTTTATTCTGGTGGCCGGGATCCTTTGCATATACATCAACTATGATTGTGATAGGCAAAGGCAAGAATTTCGGAGAACAAATGGCAAATGCTTGGTTTGGGGGAGAGCTCCATCGAAGATAGTTGCTTCATACACTACCACATCCGGGGAAACAAAGACGAGCCTTCTTCTAACCTCAGGATGGTGGGGTTTATCACGTCATTTCCACTACGTGCCAGAAATATCAGCTGCCTTCTTCTGGACTGTTCCAGCTCTTTTCAATCATTTTCTACCATACTTCTATGTGGTTTTCCTGACAACCCTTCTGCTTGACCGAGCCAAGAGGGATGATGACCGATGTCGCTCCAAGTATGGCAAATACTGGAAGTTATATTGTCAGAAGGTTTCCTACAGGGTCATCCCCGGAATCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009918 GO:0010817 GO:0012505 GO:0016020 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016627 GO:0031984 GO:0042175 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

ERG4_ERG24

Protein Analysis

197

Amino Acids

22.74

Weight (kDa)

9.36

Isoelectric Point (pI)

41.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ERG4_ERG24	PF01222	18 - 196	1.7e-42	Ergosterol biosynthesis ERG4/ERG24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	68
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	2 cut(s)	190, 203
AcoI	YGGCCR	1 cut(s)	189
AcsI	RAATTY	1 cut(s)	242
AdeI	CACNNNGTG	1 cut(s)	388
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	3 cut(s)	321, 357, 414
AgsI	TTSAA	1 cut(s)	436
AjiI	CACGTC	1 cut(s)	374
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	4 cut(s)	169, 284, 404, 428
AluI	AGCT	4 cut(s)	169, 284, 404, 428
Alw21I	GWGCWC	1 cut(s)	286
AlwI	GGATC	2 cut(s)	190, 203
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	1 cut(s)	404
ApoI	RAATTY	1 cut(s)	242
AsuC2I	CCSGG	4 cut(s)	126, 193, 322, 579
AsuNHI	GCTAGC	1 cut(s)	169
AxyI	CCTNAGG	1 cut(s)	352
BamHI	GGATCC	1 cut(s)	195
BanII	GRGCYC	1 cut(s)	286
BarI	GAAGNNNNNNTAC	2 cut(s)	548, 580
Bbv12I	GWGCWC	1 cut(s)	286
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	4 cut(s)	115, 153, 295, 351
BcgI	CGANNNNNNTGC	4 cut(s)	44, 78, 227, 261
BciT130I	CCWGG	1 cut(s)	137
BciVI	GTATCC	1 cut(s)	25
BcnI	CCSGG	4 cut(s)	126, 193, 322, 579
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	1 cut(s)	565
BfuI	GTATCC	1 cut(s)	25
BisI	GCNGC	1 cut(s)	405
BlsI	GCNGC	1 cut(s)	406
Bme1390I	CCNGG	5 cut(s)	126, 137, 193, 322, 579
BmgBI	CACGTC	1 cut(s)	374
BmiI	GGNNCC	2 cut(s)	105, 197
BmrFI	CCNGG	5 cut(s)	126, 137, 193, 322, 579
BmtI	GCTAGC	1 cut(s)	173
BoxI	GACNNNNGTC	1 cut(s)	513
BpuMI	CCSGG	4 cut(s)	126, 193, 322, 579
Bsa29I	ATCGAT	1 cut(s)	60
BsaAI	YACGTR	1 cut(s)	388
BsaJI	CCNNGG	2 cut(s)	321, 577
Bsc4I	CCNNNNNNNGG	3 cut(s)	321, 357, 414
Bse1I	ACTGG	2 cut(s)	40, 542
Bse21I	CCTNAGG	1 cut(s)	352
BseBI	CCWGG	1 cut(s)	137
BseCI	ATCGAT	1 cut(s)	60
BseDI	CCNNGG	2 cut(s)	321, 577
BseGI	GGATG	5 cut(s)	145, 317, 362, 508, 573
BseLI	CCNNNNNNNGG	3 cut(s)	321, 357, 414
BseMII	CTCAG	2 cut(s)	179, 366
BseNI	ACTGG	2 cut(s)	40, 542
BseXI	GCAGC	1 cut(s)	391
BseYI	CCCAGC	1 cut(s)	84
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	1 cut(s)	191
BshVI	ATCGAT	1 cut(s)	60
BsiEI	CGRYCG	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	286
BsiSI	CCGG	4 cut(s)	126, 192, 321, 579
BslI	CCNNNNNNNGG	3 cut(s)	321, 357, 414
BsnI	GGCC	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp143I	GATC	2 cut(s)	61, 195
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	2 cut(s)	178, 365
BspDI	ATCGAT	1 cut(s)	60
BspLI	GGNNCC	2 cut(s)	105, 197
BspOI	GCTAGC	1 cut(s)	173
BspPI	GGATC	2 cut(s)	190, 203
BsrBI	CCGCTC	1 cut(s)	68
BsrI	ACTGG	2 cut(s)	40, 542
BssECI	CCNNGG	2 cut(s)	321, 577
BssMI	GATC	2 cut(s)	61, 195
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	421
BstBAI	YACGTR	1 cut(s)	388
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	2 cut(s)	165, 352
BstF5I	GGATG	5 cut(s)	145, 317, 362, 508, 573
BstKTI	GATC	2 cut(s)	64, 198
BstMBI	GATC	2 cut(s)	61, 195
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	1 cut(s)	90
BstNI	CCWGG	1 cut(s)	137
BstNSI	RCATGY	1 cut(s)	133
BstPAI	GACNNNNGTC	1 cut(s)	513
BstSCI	CCNGG	5 cut(s)	124, 135, 191, 320, 577
BstSFI	CTRYAG	1 cut(s)	565
BstV1I	GCAGC	1 cut(s)	391
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
Bsu15I	ATCGAT	1 cut(s)	60
Bsu36I	CCTNAGG	1 cut(s)	352
BsuI	GTATCC	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	191
BsuTUI	ATCGAT	1 cut(s)	60
BtrI	CACGTC	1 cut(s)	374
BtsCI	GGATG	5 cut(s)	145, 317, 362, 508, 573
Cac8I	GCNNGC	1 cut(s)	171
ClaI	ATCGAT	1 cut(s)	60
CsiI	ACCWGGT	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	8 cut(s)	28, 169, 191, 284, 339, 404, 428, 494
CviKI_1	RGCY	8 cut(s)	28, 169, 191, 284, 339, 404, 428, 494
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	2 cut(s)	165, 352
DpnI	GATC	2 cut(s)	63, 197
DpnII	GATC	2 cut(s)	61, 195
DraIII	CACNNNGTG	1 cut(s)	388
EaeI	YGGCCR	1 cut(s)	189
Ecl136II	GAGCTC	1 cut(s)	284
Eco24I	GRGCYC	1 cut(s)	286
Eco53kI	GAGCTC	1 cut(s)	284
Eco81I	CCTNAGG	1 cut(s)	352
EcoICRI	GAGCTC	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	135
EcoT38I	GRGCYC	1 cut(s)	286
FaeI	CATG	1 cut(s)	133
FatI	CATG	1 cut(s)	129
FauI	CCCGC	1 cut(s)	61
Fnu4HI	GCNGC	1 cut(s)	405
FokI	GGATG	5 cut(s)	132, 304, 369, 515, 560
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	1 cut(s)	405
FspBI	CTAG	1 cut(s)	170
GluI	GCNGC	1 cut(s)	405
GsaI	CCCAGC	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	191
HapII	CCGG	4 cut(s)	126, 192, 321, 579
Hin1II	CATG	1 cut(s)	133
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HinfI	GANTC	1 cut(s)	582
HpaII	CCGG	4 cut(s)	126, 192, 321, 579
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	2 cut(s)	249, 555
Hpy188III	TCNNGA	3 cut(s)	354, 415, 469
Hpy8I	GTNNAC	1 cut(s)	142
HpyAV	CCTTC	4 cut(s)	350, 418, 488, 550
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4IV	ACGT	2 cut(s)	373, 387
HpyCH4V	TGCA	2 cut(s)	55, 204
HpyF10VI	GCNNNNNNNGC	1 cut(s)	90
HpyF3I	CTNAG	2 cut(s)	165, 352
HpySE526I	ACGT	2 cut(s)	373, 387
Hsp92II	CATG	1 cut(s)	133
Kzo9I	GATC	2 cut(s)	61, 195
LmnI	GCTCC	2 cut(s)	289, 524
Lsp1109I	GCAGC	1 cut(s)	391
MabI	ACCWGGT	1 cut(s)	135
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	2 cut(s)	373, 387
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	2 cut(s)	63, 197
MbiI	CCGCTC	1 cut(s)	68
MboI	GATC	2 cut(s)	61, 195
MboII	GAAGA	3 cut(s)	304, 335, 403
MflI	RGATCY	1 cut(s)	195
MhlI	GDGCHC	1 cut(s)	286
MluCI	AATT	1 cut(s)	242
MnlI	CCTC	3 cut(s)	18, 361, 492
MspA1I	CMGCKG	1 cut(s)	404
MspI	CCGG	4 cut(s)	126, 192, 321, 579
MspR9I	CCNGG	5 cut(s)	126, 137, 193, 322, 579
MvaI	CCWGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	1 cut(s)	90
NciI	CCSGG	4 cut(s)	126, 193, 322, 579
NdeII	GATC	2 cut(s)	61, 195
NheI	GCTAGC	1 cut(s)	169
NlaIII	CATG	1 cut(s)	133
NlaIV	GGNNCC	2 cut(s)	105, 197
NmuCI	GTSAC	1 cut(s)	3
NspI	RCATGY	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	582
PkrI	GCNGC	1 cut(s)	406
Ple19I	CGATCG	1 cut(s)	64
Ppu21I	YACGTR	1 cut(s)	388
PshAI	GACNNNNGTC	1 cut(s)	513
Psp124BI	GAGCTC	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	135
PspFI	CCCAGC	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	2 cut(s)	105, 197
PsuI	RGATCY	1 cut(s)	195
PvuI	CGATCG	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	404
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SacI	GAGCTC	1 cut(s)	286
SatI	GCNGC	1 cut(s)	405
Sau3AI	GATC	2 cut(s)	61, 195
ScrFI	CCNGG	5 cut(s)	126, 137, 193, 322, 579
SduI	GDGCHC	1 cut(s)	286
SetI	ASST	9 cut(s)	138, 171, 286, 353, 376, 390, 406, 430, 561
SexAI	ACCWGGT	1 cut(s)	135
SfcI	CTRYAG	1 cut(s)	565
Sse9I	AATT	1 cut(s)	242
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	1 cut(s)	170
SstI	GAGCTC	1 cut(s)	286
StyD4I	CCNGG	5 cut(s)	124, 135, 191, 320, 577
TaaI	ACNGT	1 cut(s)	421
TaiI	ACGT	2 cut(s)	376, 390
TaqI	TCGA	3 cut(s)	60, 64, 290
TaqII	GACCGA	2 cut(s)	504, 525
TasI	AATT	1 cut(s)	242
TfiI	GAWTC	1 cut(s)	582
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	404
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	1 cut(s)	294
XapI	RAATTY	1 cut(s)	242
XceI	RCATGY	1 cut(s)	133
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.