pycom17g15970

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Reverse (-)
14276420 .. 14276960
541 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 318 bp
ATGGCAGGGGAAGATGAGGACTTGCCCAGAGATGCTAAGATCGTGAAAACACTGTTGAAATCAATGGGTCTGGAGGAATATGAACCTCGTGTTGTTCACCAGTTCCTGGAGCTATGGTATCGATATGTTGTTGATGTTCTAAGTGATGCACAGGTTTTACCGGAGTTGGCTAGAAACAGAAACAAAATCCCGTTACCAAAATCAATTGCAGGGCCTGGAGTGGCATTGCCACCTGAACACGTTGATCAGCCCGAACTATCAACTTGCAATCCCGAAGAAACAACCAACGCAAGCAACGGAAGAAATGGTGGAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000124 GO:0000428 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007584 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0030880 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0035097 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044665 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070461 GO:0071339 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901698 GO:1901700 GO:1902065 GO:1902493 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1905368 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05168 map03022 map05168
Pfam Domains
Protein Families
TFIID-31kDa

Protein Analysis

106

Amino Acids

11.59

Weight (kDa)

4.83

Isoelectric Point (pI)

32.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIID-31kDa PF02291 6 - 53 4.4e-17 Transcription initiation factor IID, 31kD subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 106
AfiI CCNNNNNNNGG 1 cut(s) 106
AflIII ACRYGT 1 cut(s) 238
AgsI TTSAA 1 cut(s) 58
AjnI CCWGG 2 cut(s) 105, 214
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
AlwNI CAGNNNCTG 2 cut(s) 106, 215
AoxI GGCC 1 cut(s) 212
AspS9I GGNCC 1 cut(s) 212
AsuHPI GGTGA 1 cut(s) 89
BauI CACGAG 1 cut(s) 87
BciT130I CCWGG 2 cut(s) 107, 216
BclI TGATCA 1 cut(s) 244
BfaI CTAG 1 cut(s) 171
Bme1390I CCNGG 2 cut(s) 107, 216
BmgT120I GGNCC 1 cut(s) 212
BmrFI CCNGG 2 cut(s) 107, 216
BmsI GCATC 2 cut(s) 22, 136
BpmI CTGGAG 3 cut(s) 92, 128, 237
Bsa29I ATCGAT 1 cut(s) 121
BsaWI WCCGGW 1 cut(s) 160
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse1I ACTGG 1 cut(s) 100
Bse3DI GCAATG 1 cut(s) 224
BseBI CCWGG 2 cut(s) 107, 216
BseCI ATCGAT 1 cut(s) 121
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMI GCAATG 1 cut(s) 224
BseNI ACTGG 1 cut(s) 100
BshFI GGCC 1 cut(s) 214
BshVI ATCGAT 1 cut(s) 121
BsiSI CCGG 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 106
BsnI GGCC 1 cut(s) 214
Bsp143I GATC 2 cut(s) 39, 244
BspANI GGCC 1 cut(s) 214
BspDI ATCGAT 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 224
BsrI ACTGG 1 cut(s) 100
BssMI GATC 2 cut(s) 39, 244
BssSI CACGAG 1 cut(s) 87
Bst2BI CACGAG 1 cut(s) 87
Bst2UI CCWGG 2 cut(s) 107, 216
Bst4CI ACNGT 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 292
BstDEI CTNAG 2 cut(s) 36, 140
BstKTI GATC 2 cut(s) 42, 247
BstMBI GATC 2 cut(s) 39, 244
BstNI CCWGG 2 cut(s) 107, 216
BstSCI CCNGG 2 cut(s) 105, 214
Bsu15I ATCGAT 1 cut(s) 121
BsuRI GGCC 1 cut(s) 214
BsuTUI ATCGAT 1 cut(s) 121
BtsIMutI CAGTG 1 cut(s) 50
Cac8I GCNNGC 1 cut(s) 292
CaiI CAGNNNCTG 2 cut(s) 106, 215
Cfr13I GGNCC 1 cut(s) 212
ClaI ATCGAT 1 cut(s) 121
CviJI RGCY 4 cut(s) 112, 170, 214, 250
CviKI_1 RGCY 4 cut(s) 112, 170, 214, 250
DdeI CTNAG 2 cut(s) 36, 140
DpnI GATC 2 cut(s) 41, 246
DpnII GATC 2 cut(s) 39, 244
EcoO109I RGGNCCY 1 cut(s) 212
EcoRII CCWGG 2 cut(s) 105, 214
FaiI YATR 3 cut(s) 81, 115, 126
FbaI TGATCA 1 cut(s) 244
FspBI CTAG 1 cut(s) 171
GsuI CTGGAG 3 cut(s) 92, 128, 237
HaeIII GGCC 1 cut(s) 214
HapII CCGG 1 cut(s) 161
HpaII CCGG 1 cut(s) 161
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 97
Hpy188III TCNNGA 3 cut(s) 43, 71, 272
Hpy8I GTNNAC 1 cut(s) 97
HpyCH4III ACNGT 1 cut(s) 54
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 3 cut(s) 149, 209, 267
HpyF3I CTNAG 2 cut(s) 36, 140
HpySE526I ACGT 1 cut(s) 240
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 2 cut(s) 39, 244
LmnI GCTCC 1 cut(s) 109
LweI GCATC 2 cut(s) 22, 136
MaeI CTAG 1 cut(s) 171
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 192
MalI GATC 2 cut(s) 41, 246
MboI GATC 2 cut(s) 39, 244
MboII GAAGA 3 cut(s) 23, 287, 312
MfeI CAATTG 1 cut(s) 204
MluCI AATT 1 cut(s) 204
MnlI CCTC 4 cut(s) 10, 67, 96, 305
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 2 cut(s) 107, 216
MunI CAATTG 1 cut(s) 204
MvaI CCWGG 2 cut(s) 107, 216
NdeII GATC 2 cut(s) 39, 244
PflMI CCANNNNNTGG 1 cut(s) 106
PfoI TCCNGGA 1 cut(s) 105
Psp6I CCWGG 2 cut(s) 105, 214
PspGI CCWGG 2 cut(s) 105, 214
PspPI GGNCC 1 cut(s) 212
PstNI CAGNNNCTG 2 cut(s) 106, 215
Sau3AI GATC 2 cut(s) 39, 244
Sau96I GGNCC 1 cut(s) 212
ScrFI CCNGG 2 cut(s) 107, 216
SetI ASST 5 cut(s) 88, 114, 156, 235, 243
SfaNI GCATC 2 cut(s) 22, 136
Sse9I AATT 1 cut(s) 204
SspMI CTAG 1 cut(s) 171
StyD4I CCNGG 2 cut(s) 105, 214
TaaI ACNGT 1 cut(s) 54
TaiI ACGT 1 cut(s) 243
TaqI TCGA 1 cut(s) 121
TasI AATT 1 cut(s) 204
TscAI CASTG 1 cut(s) 57
TspDTI ATGAA 1 cut(s) 96
TspGWI ACGGA 1 cut(s) 312
TspRI CASTG 1 cut(s) 57
Van91I CCANNNNNTGG 1 cut(s) 106
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.