Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

14480180 .. 14482895

Gene Structure 2716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1707 bp

ATGAAAATTGTGACTCTACACAGGCTTAATTTTAGATATGTGGAAATGAATTCTCCAAAATGTAGAAGATCTAGCATGCCACGAAATTCAAAGCTATTAATGAATCTCAACAAATATGTCAGCTCTATTGTCATTGGCCCACAGACACTGTATTACTTGAAACCTAATTTCTATTTTGTTAATATATCTTGTCTAATTGATTTGATCCGGAACACATTAGGTAATAACCAAATAGAGAGGGCTTTCTACACACCTAAAAGTTTCGACCAAAAAAGGACCCCTTTTATATTTAGGCAATTGGTCAATATTAAAAGTCAGAATTCTTGTGGTCAAAGCGCGCAGATGTTCAATTTACAATATTGGATGCAAATTTATTGTTTACGTGAGGGTCATGTGCAATCTGGTCTACTACAAACCCTAGAAAACAAGACCAGTACTCGAGATCCTTTGCCCACCTATCCCTACTATTCTCTCTTGTCACGTAATAGTAAACCTTTTACTAAAAGACTGCATGCTCTTTATATTTTCTTTTTCCTTTTAATTTTATTTACTACAACTTGCACATGCAAAAAGAAATTGTGCAGCATGCCAAATAATCACCCATCTGATGTGATCTATTTGTGTCGTTATTCTTTTCACCTCAATTCTTCTTTTTTTTATATAGGATCAAATACTTTTTTCTTTGGCAGGCTTTGTAGTAGGAGTAGTATGTGTACTGTAGCATCAACCCTTGTTGCTCTCTTGTTGCTCAATCATCAATACCATGATCAAAATTTGAATAATTATATTATATTTTATATAGGATCAAATACTTTTTTCTTTGGCAGGCTTTGTAGTAGGAGTAGTATGTGTACTGTAGCATCAACCCTTGTTGCTCTCTTGTTGCTCAATCATCAATACCATGATCAAAATTTGAAAGAGAGAGCGTCATTATATATACTTATAAGTGGTAGTTGGCATCCTCTCTGCATATATAACTTAGTTTCCCAAAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGTGGCTCAATGGCTCCTGTGACAAAAGAGTCCGTCAATAGAAGAAAAATGAAGGGAGGGGAAGCCATGAAAAACGCAAAAAGGAAAGTCAACAAGGGAGCATGGACAACAGAAGAAGATCAGAAACTGGCTAAAGCTATTGAAACACATGGTGCAAAAAGGTGGAAGACAATTTCATCTAAAGCAGGCCTCAATAGGTGTGGCAAGAGTTGCAGGCTAAGATGGTTGAACTATCTCAGACCAAACATCAAGAGAGGCAACATATCTGACCAAGAAGAGGACTTGATCGTTAGACTTCACAAACTTCTTGGAAATAGGTGGTCTTTAATTGCCGGACGATTGCCTGGTCGAACAGATAATGAAATAAAAAACTACTGGAATTCTCATTTGAGCAAAAGAATGAGCCAAAAGGAAAAGGAAAATGGAGCCAATTTAACAAGAAAAATGATCTCCACAGATCATCAGAAGGATCACGTACAAATGAAAGAAGATGTGTCGTTGCAAGAGGCTGCTACTAGTACCAGTACTACTAGTGCTTCATCTAGTGCTGCATCTAAAGGAGGTGATCAAAACTCCAACATTAATATTGATGTGGATGATTTCTTTGATTTCTCCAATGAGGGTTCTTTGAATTTGGAATGGGTGAGCAAGTTCCTTGAACAAGATCATGGCAGATGGCTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009889 GO:0009987 GO:0010023 GO:0010468 GO:0010556 GO:0016053 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046189 GO:0046394 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

569

Amino Acids

65.34

Weight (kDa)

9.72

Isoelectric Point (pI)

54.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	372 - 419	7.4e-19	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	375 - 433	2.7e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	425 - 470	4.6e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	429 - 477	2e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	944
AasI	GACNNNNNNGTC	1 cut(s)	1048
AccI	GTMKAC	1 cut(s)	406
AccII	CGCG	1 cut(s)	338
AccIII	TCCGGA	1 cut(s)	207
AclWI	GGATC	5 cut(s)	199, 437, 673, 811, 1497
AcsI	RAATTY	8 cut(s)	49, 85, 319, 369, 772, 910, 1399, 1651
AdeI	CACNNNGTG	1 cut(s)	1172
AfaI	GTAC	6 cut(s)	436, 715, 853, 1497, 1540, 1546
AfiI	CCNNNNNNNGG	1 cut(s)	1297
AgsI	TTSAA	9 cut(s)	90, 160, 349, 778, 916, 1163, 1249, 1651, 1679
AhlI	ACTAGT	2 cut(s)	1535, 1550
AjnI	CCWGG	1 cut(s)	1363
AluBI	AGCT	3 cut(s)	94, 123, 1157
AluI	AGCT	3 cut(s)	94, 123, 1157
Alw26I	GTCTC	1 cut(s)	998
AlwI	GGATC	5 cut(s)	199, 437, 673, 811, 1497
AlwNI	CAGNNNCTG	2 cut(s)	148, 1147
Ama87I	CYCGRG	1 cut(s)	438
Aor13HI	TCCGGA	1 cut(s)	207
AoxI	GGCC	2 cut(s)	136, 1207
ApeKI	GCWGC	3 cut(s)	582, 1529, 1568
ApoI	RAATTY	8 cut(s)	49, 85, 319, 369, 772, 910, 1399, 1651
AseI	ATTAAT	2 cut(s)	98, 1602
AspLEI	GCGC	2 cut(s)	338, 340
AspS9I	GGNCC	2 cut(s)	137, 276
AsuHPI	GGTGA	4 cut(s)	590, 629, 1595, 1675
AvaI	CYCGRG	1 cut(s)	438
AvaII	GGWCC	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	1193
BbvI	GCAGC	3 cut(s)	594, 1516, 1555
BccI	CCATC	3 cut(s)	610, 1236, 1689
BciT130I	CCWGG	1 cut(s)	1365
BclI	TGATCA	3 cut(s)	766, 904, 1585
BcoDI	GTCTC	1 cut(s)	998
BcuI	ACTAGT	2 cut(s)	1535, 1550
BfaI	CTAG	5 cut(s)	72, 419, 1536, 1551, 1563
BfmI	CTRYAG	2 cut(s)	717, 855
BglII	AGATCT	1 cut(s)	68
BisI	GCNGC	3 cut(s)	583, 1530, 1569
BlsI	GCNGC	3 cut(s)	584, 1531, 1570
BmcAI	AGTACT	2 cut(s)	436, 1546
Bme1390I	CCNGG	1 cut(s)	1365
Bme18I	GGWCC	1 cut(s)	276
BmeT110I	CYCGRG	1 cut(s)	438
BmgT120I	GGNCC	2 cut(s)	137, 276
BmiI	GGNNCC	3 cut(s)	278, 1035, 1447
BmrFI	CCNGG	1 cut(s)	1365
BmsI	GCATC	5 cut(s)	354, 731, 869, 967, 1580
BpiI	GAAGAC	1 cut(s)	1193
BsaAI	YACGTR	3 cut(s)	383, 482, 1495
BsaWI	WCCGGW	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	1 cut(s)	1297
Bse1I	ACTGG	4 cut(s)	432, 1152, 1400, 1542
BseAI	TCCGGA	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	1365
BseGI	GGATG	3 cut(s)	369, 958, 1621
BseLI	CCNNNNNNNGG	1 cut(s)	1297
BseMII	CTCAG	2 cut(s)	1033, 1270
BseNI	ACTGG	4 cut(s)	432, 1152, 1400, 1542
BsePI	GCGCGC	1 cut(s)	336
BseXI	GCAGC	3 cut(s)	594, 1516, 1555
BsgI	GTGCAG	1 cut(s)	601
Bsh1236I	CGCG	1 cut(s)	338
BshFI	GGCC	2 cut(s)	138, 1209
BsiHKCI	CYCGRG	1 cut(s)	438
BsiSI	CCGG	2 cut(s)	208, 1353
BslI	CCNNNNNNNGG	1 cut(s)	1297
BsmAI	GTCTC	1 cut(s)	998
BsnI	GGCC	2 cut(s)	138, 1209
BsoBI	CYCGRG	1 cut(s)	438
Bsp13I	TCCGGA	1 cut(s)	207
BspANI	GGCC	2 cut(s)	138, 1209
BspCNI	CTCAG	2 cut(s)	1032, 1269
BspEI	TCCGGA	1 cut(s)	207
BspFNI	CGCG	1 cut(s)	338
BspLI	GGNNCC	3 cut(s)	278, 1035, 1447
BspPI	GGATC	5 cut(s)	199, 437, 673, 811, 1497
BsrI	ACTGG	4 cut(s)	432, 1152, 1400, 1542
BssHII	GCGCGC	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	1365
Bst4CI	ACNGT	3 cut(s)	150, 718, 856
Bst6I	CTCTTC	1 cut(s)	1290
BstAPI	GCANNNNNTGC	1 cut(s)	1230
BstBAI	YACGTR	3 cut(s)	383, 482, 1495
BstC8I	GCNNGC	8 cut(s)	77, 338, 513, 587, 689, 827, 1207, 1235
BstDEI	CTNAG	4 cut(s)	979, 1019, 1238, 1256
BstF5I	GGATG	3 cut(s)	369, 958, 1621
BstFNI	CGCG	1 cut(s)	338
BstHHI	GCGC	2 cut(s)	338, 340
BstMAI	GTCTC	1 cut(s)	998
BstMWI	GCNNNNNNNGC	1 cut(s)	1230
BstNI	CCWGG	1 cut(s)	1365
BstNSI	RCATGY	4 cut(s)	79, 515, 567, 589
BstSCI	CCNGG	1 cut(s)	1363
BstSFI	CTRYAG	2 cut(s)	717, 855
BstUI	CGCG	1 cut(s)	338
BstV1I	GCAGC	3 cut(s)	594, 1516, 1555
BstV2I	GAAGAC	1 cut(s)	1193
BstX2I	RGATCY	2 cut(s)	68, 442
BstYI	RGATCY	2 cut(s)	68, 442
BsuRI	GGCC	2 cut(s)	138, 1209
BtsCI	GGATG	3 cut(s)	369, 958, 1621
BtsIMutI	CAGTG	2 cut(s)	146, 1027
Cac8I	GCNNGC	8 cut(s)	77, 338, 513, 587, 689, 827, 1207, 1235
CaiI	CAGNNNCTG	2 cut(s)	148, 1147
CfoI	GCGC	2 cut(s)	338, 340
Cfr13I	GGNCC	2 cut(s)	137, 276
CseI	GACGC	1 cut(s)	915
Csp6I	GTAC	6 cut(s)	435, 714, 852, 1496, 1539, 1545
CspCI	CAANNNNNGTGG	2 cut(s)	1201, 1236
CviQI	GTAC	6 cut(s)	435, 714, 852, 1496, 1539, 1545
DdeI	CTNAG	4 cut(s)	979, 1019, 1238, 1256
DraIII	CACNNNGTG	1 cut(s)	1172
DrdI	GACNNNNNNGTC	1 cut(s)	1048
DseDI	GACNNNNNNGTC	1 cut(s)	1048
Eam1104I	CTCTTC	1 cut(s)	1290
EarI	CTCTTC	1 cut(s)	1290
Eco147I	AGGCCT	1 cut(s)	1209
Eco47I	GGWCC	1 cut(s)	276
Eco88I	CYCGRG	1 cut(s)	438
EcoO109I	RGGNCCY	1 cut(s)	276
EcoRI	GAATTC	3 cut(s)	49, 319, 1399
EcoRII	CCWGG	1 cut(s)	1363
FalI	AAGNNNNNCTT	2 cut(s)	265, 297
FbaI	TGATCA	3 cut(s)	766, 904, 1585
FblI	GTMKAC	1 cut(s)	406
Fnu4HI	GCNGC	3 cut(s)	583, 1530, 1569
FokI	GGATG	3 cut(s)	376, 945, 1628
Fsp4HI	GCNGC	3 cut(s)	583, 1530, 1569
FspBI	CTAG	5 cut(s)	72, 419, 1536, 1551, 1563
GlaI	GCGC	2 cut(s)	337, 339
GluI	GCNGC	3 cut(s)	583, 1530, 1569
HaeIII	GGCC	2 cut(s)	138, 1209
HapII	CCGG	2 cut(s)	208, 1353
HgaI	GACGC	1 cut(s)	915
HhaI	GCGC	2 cut(s)	338, 340
Hin6I	GCGC	2 cut(s)	336, 338
HinP1I	GCGC	2 cut(s)	336, 338
HincII	GTYRAC	1 cut(s)	1111
HindII	GTYRAC	1 cut(s)	1111
HinfI	GANTC	3 cut(s)	13, 103, 1049
HpaII	CCGG	2 cut(s)	208, 1353
HphI	GGTGA	4 cut(s)	590, 629, 1595, 1675
Hpy166II	GTNNAC	6 cut(s)	380, 407, 491, 714, 852, 1111
Hpy188I	TCNGA	6 cut(s)	318, 607, 1143, 1259, 1288, 1485
Hpy188III	TCNNGA	3 cut(s)	208, 440, 1270
Hpy8I	GTNNAC	6 cut(s)	380, 407, 491, 714, 852, 1111
HpyAV	CCTTC	2 cut(s)	1066, 1480
HpyCH4III	ACNGT	3 cut(s)	150, 718, 856
HpyCH4IV	ACGT	3 cut(s)	382, 481, 1494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1230
HpyF3I	CTNAG	4 cut(s)	979, 1019, 1238, 1256
HpySE526I	ACGT	3 cut(s)	382, 481, 1494
HspAI	GCGC	2 cut(s)	336, 338
Kpn2I	TCCGGA	1 cut(s)	207
Ksp22I	TGATCA	3 cut(s)	766, 904, 1585
LmnI	GCTCC	3 cut(s)	1039, 1118, 1445
Lsp1109I	GCAGC	3 cut(s)	594, 1516, 1555
LweI	GCATC	5 cut(s)	354, 731, 869, 967, 1580
MaeI	CTAG	5 cut(s)	72, 419, 1536, 1551, 1563
MaeII	ACGT	3 cut(s)	382, 481, 1494
MaeIII	GTNAC	3 cut(s)	10, 477, 1039
MboII	GAAGA	8 cut(s)	78, 639, 1074, 1145, 1148, 1198, 1307, 1520
MfeI	CAATTG	1 cut(s)	296
MflI	RGATCY	2 cut(s)	68, 442
MlyI	GAGTC	2 cut(s)	7, 1058
MmeI	TCCRAC	1 cut(s)	1620
MroI	TCCGGA	1 cut(s)	207
MseI	TTAA	9 cut(s)	27, 98, 180, 309, 539, 1346, 1454, 1602, 1701
MspI	CCGG	2 cut(s)	208, 1353
MspR9I	CCNGG	1 cut(s)	1365
MunI	CAATTG	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	1365
MvnI	CGCG	1 cut(s)	338
MwoI	GCNNNNNNNGC	1 cut(s)	1230
NlaIV	GGNNCC	3 cut(s)	278, 1035, 1447
NmuCI	GTSAC	3 cut(s)	10, 477, 1039
NspI	RCATGY	4 cut(s)	79, 515, 567, 589
PaeI	GCATGC	3 cut(s)	79, 515, 589
PaeR7I	CTCGAG	1 cut(s)	438
PauI	GCGCGC	1 cut(s)	336
PceI	AGGCCT	1 cut(s)	1209
PfeI	GAWTC	1 cut(s)	103
PkrI	GCNGC	3 cut(s)	584, 1531, 1570
PleI	GAGTC	2 cut(s)	7, 1057
PpsI	GAGTC	2 cut(s)	7, 1057
Ppu21I	YACGTR	3 cut(s)	383, 482, 1495
PpuMI	RGGWCCY	1 cut(s)	276
PshBI	ATTAAT	2 cut(s)	98, 1602
PsiI	TTATAA	1 cut(s)	944
Psp5II	RGGWCCY	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	1363
PspGI	CCWGG	1 cut(s)	1363
PspN4I	GGNNCC	3 cut(s)	278, 1035, 1447
PspPI	GGNCC	2 cut(s)	137, 276
PspPPI	RGGWCCY	1 cut(s)	276
PstNI	CAGNNNCTG	2 cut(s)	148, 1147
PsuI	RGATCY	2 cut(s)	68, 442
PteI	GCGCGC	1 cut(s)	336
RsaI	GTAC	6 cut(s)	436, 715, 853, 1497, 1540, 1546
RsaNI	GTAC	6 cut(s)	435, 714, 852, 1496, 1539, 1545
SaqAI	TTAA	9 cut(s)	27, 98, 180, 309, 539, 1346, 1454, 1602, 1701
SatI	GCNGC	3 cut(s)	583, 1530, 1569
Sau96I	GGNCC	2 cut(s)	137, 276
ScaI	AGTACT	2 cut(s)	436, 1546
SchI	GAGTC	2 cut(s)	7, 1058
ScrFI	CCNGG	1 cut(s)	1365
SfaNI	GCATC	5 cut(s)	354, 731, 869, 967, 1580
SfcI	CTRYAG	2 cut(s)	717, 855
Sfr274I	CTCGAG	1 cut(s)	438
SinI	GGWCC	1 cut(s)	276
SlaI	CTCGAG	1 cut(s)	438
SmlI	CTYRAG	1 cut(s)	438
SmoI	CTYRAG	1 cut(s)	438
SpeI	ACTAGT	2 cut(s)	1535, 1550
SphI	GCATGC	3 cut(s)	79, 515, 589
SseBI	AGGCCT	1 cut(s)	1209
SspI	AATATT	3 cut(s)	307, 359, 1606
SspMI	CTAG	5 cut(s)	72, 419, 1536, 1551, 1563
StuI	AGGCCT	1 cut(s)	1209
StyD4I	CCNGG	1 cut(s)	1363
TaaI	ACNGT	3 cut(s)	150, 718, 856
TaiI	ACGT	3 cut(s)	385, 484, 1497
TaqI	TCGA	3 cut(s)	264, 439, 1369
TatI	WGTACW	4 cut(s)	434, 713, 851, 1544
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	9 cut(s)	27, 98, 180, 309, 539, 1346, 1454, 1602, 1701
Tru9I	TTAA	9 cut(s)	27, 98, 180, 309, 539, 1346, 1454, 1602, 1701
TscAI	CASTG	2 cut(s)	153, 1027
TseFI	GTSAC	3 cut(s)	10, 477, 1039
TseI	GCWGC	3 cut(s)	582, 1529, 1568
Tsp45I	GTSAC	3 cut(s)	10, 477, 1039
TspDTI	ATGAA	9 cut(s)	17, 62, 116, 1085, 1103, 1185, 1395, 1517, 1548
TspGWI	ACGGA	1 cut(s)	1042
TspRI	CASTG	2 cut(s)	153, 1027
VpaK11BI	GGWCC	1 cut(s)	276
VspI	ATTAAT	2 cut(s)	98, 1602
XapI	RAATTY	8 cut(s)	49, 85, 319, 369, 772, 910, 1399, 1651
XceI	RCATGY	4 cut(s)	79, 515, 567, 589
XhoI	CTCGAG	1 cut(s)	438
XmiI	GTMKAC	1 cut(s)	406
XspI	CTAG	5 cut(s)	72, 419, 1536, 1551, 1563
ZrmI	AGTACT	2 cut(s)	436, 1546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.