Nuclear transcription factor Y subunit
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| CBFB_NFYA | PF02045 | 833 - 888 | 3.4e-24 | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B |
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No orthologs found for this gene in the current database.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 3207, 3836, 3923 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 4020 |
| Acc16I | TGCGCA | 1 cut(s) | 2872 |
| Acc36I | ACCTGC | 1 cut(s) | 1668 |
| Acc65I | GGTACC | 1 cut(s) | 1331 |
| AccB1I | GGYRCC | 1 cut(s) | 1331 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 2446, 3179, 4344 |
| AccII | CGCG | 1 cut(s) | 2556 |
| AciI | CCGC | 8 cut(s) | 588, 1796, 1900, 2840, 2879, 4029, 4099, 4581 |
| AclI | AACGTT | 1 cut(s) | 1076 |
| AclWI | GGATC | 7 cut(s) | 864, 1102, 2656, 4415, 4428, 4571, 4584 |
| AcoI | YGGCCR | 2 cut(s) | 3265, 4325 |
| AcuI | CTGAAG | 4 cut(s) | 210, 2522, 2709, 2991 |
| AdeI | CACNNNGTG | 1 cut(s) | 4344 |
| AfaI | GTAC | 5 cut(s) | 561, 1333, 2525, 3256, 3284 |
| AflIII | ACRYGT | 2 cut(s) | 1126, 4498 |
| AhlI | ACTAGT | 1 cut(s) | 3257 |
| AjnI | CCWGG | 6 cut(s) | 740, 2439, 3038, 3410, 4384, 4547 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 2975, 3004, 3007, 3036, 3737, 3769 |
| Alw21I | GWGCWC | 1 cut(s) | 3562 |
| Alw26I | GTCTC | 2 cut(s) | 141, 821 |
| AlwI | GGATC | 7 cut(s) | 864, 1102, 2656, 4415, 4428, 4571, 4584 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1908 |
| AoxI | GGCC | 5 cut(s) | 737, 1570, 1784, 3265, 4325 |
| ApeKI | GCWGC | 1 cut(s) | 3330 |
| AseI | ATTAAT | 1 cut(s) | 3690 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 294 |
| Asp718I | GGTACC | 1 cut(s) | 1331 |
| AspA2I | CCTAGG | 1 cut(s) | 799 |
| AspLEI | GCGC | 3 cut(s) | 2558, 2873, 4377 |
| AspS9I | GGNCC | 6 cut(s) | 738, 1362, 1570, 1784, 2843, 3399 |
| AsuC2I | CCSGG | 1 cut(s) | 4045 |
| AsuHPI | GGTGA | 7 cut(s) | 99, 299, 1581, 2110, 2404, 2437, 2797 |
| AvaII | GGWCC | 3 cut(s) | 1362, 2843, 3399 |
| AvrII | CCTAGG | 1 cut(s) | 799 |
| AxyI | CCTNAGG | 1 cut(s) | 2978 |
| BalI | TGGCCA | 1 cut(s) | 4327 |
| BamHI | GGATCC | 2 cut(s) | 4420, 4576 |
| BanI | GGYRCC | 1 cut(s) | 1331 |
| BanII | GRGCYC | 1 cut(s) | 1900 |
| BauI | CACGAG | 2 cut(s) | 1150, 1962 |
| BbsI | GAAGAC | 5 cut(s) | 801, 811, 846, 873, 1929 |
| Bbv12I | GWGCWC | 1 cut(s) | 3562 |
| BbvI | GCAGC | 1 cut(s) | 3342 |
| BccI | CCATC | 9 cut(s) | 436, 1147, 1162, 2210, 2900, 2908, 3181, 4166, 4317 |
| BceAI | ACGGC | 1 cut(s) | 2584 |
| BciT130I | CCWGG | 6 cut(s) | 742, 2441, 3040, 3412, 4386, 4549 |
| BcnI | CCSGG | 1 cut(s) | 4045 |
| BcoDI | GTCTC | 2 cut(s) | 141, 821 |
| BcuI | ACTAGT | 1 cut(s) | 3257 |
| BfaI | CTAG | 7 cut(s) | 800, 2162, 2643, 3201, 3258, 4106, 4290 |
| BfoI | RGCGCY | 1 cut(s) | 4378 |
| BfuAI | ACCTGC | 1 cut(s) | 1668 |
| BglII | AGATCT | 2 cut(s) | 1008, 2332 |
| BisI | GCNGC | 1 cut(s) | 3331 |
| BlnI | CCTAGG | 1 cut(s) | 799 |
| BlpI | GCTNAGC | 1 cut(s) | 2559 |
| BlsI | GCNGC | 1 cut(s) | 3332 |
| BmcAI | AGTACT | 1 cut(s) | 561 |
| Bme1390I | CCNGG | 7 cut(s) | 742, 2441, 3040, 3412, 4045, 4386, 4549 |
| Bme18I | GGWCC | 3 cut(s) | 1362, 2843, 3399 |
| BmgT120I | GGNCC | 6 cut(s) | 738, 1362, 1570, 1784, 2843, 3399 |
| BmiI | GGNNCC | 8 cut(s) | 1333, 1680, 2469, 2844, 2884, 3323, 4422, 4578 |
| BmrFI | CCNGG | 7 cut(s) | 742, 2441, 3040, 3412, 4045, 4386, 4549 |
| BmrI | ACTGGG | 1 cut(s) | 287 |
| BmsI | GCATC | 7 cut(s) | 1548, 1783, 1984, 2029, 2293, 3340, 4363 |
| BmuI | ACTGGG | 1 cut(s) | 287 |
| BoxI | GACNNNNGTC | 1 cut(s) | 605 |
| BpiI | GAAGAC | 5 cut(s) | 801, 811, 846, 873, 1929 |
| BpmI | CTGGAG | 2 cut(s) | 1290, 2890 |
| Bpu10I | CCTNAGC | 1 cut(s) | 773 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2559 |
| BpuMI | CCSGG | 1 cut(s) | 4045 |
| BsaAI | YACGTR | 2 cut(s) | 2150, 3254 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1099, 1544 |
| BsaJI | CCNNGG | 8 cut(s) | 740, 799, 2439, 2797, 2991, 3020, 4370, 4385 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 596, 626, 2221, 2251 |
| Bse1I | ACTGG | 7 cut(s) | 97, 282, 1123, 2907, 3402, 3465, 4534 |
| Bse21I | CCTNAGG | 1 cut(s) | 2978 |
| Bse3DI | GCAATG | 1 cut(s) | 2195 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1099, 1544 |
| BseBI | CCWGG | 6 cut(s) | 742, 2441, 3040, 3412, 4386, 4549 |
| BseDI | CCNNGG | 8 cut(s) | 740, 799, 2439, 2797, 2991, 3020, 4370, 4385 |
| BseGI | GGATG | 8 cut(s) | 447, 1563, 2020, 2434, 2900, 2987, 3016, 3072 |
| BseJI | GATNNNNATC | 2 cut(s) | 1099, 1544 |
| BseMI | GCAATG | 1 cut(s) | 2195 |
| BseMII | CTCAG | 7 cut(s) | 1737, 2585, 2630, 2992, 3093, 3803, 4199 |
| BseNI | ACTGG | 7 cut(s) | 97, 282, 1123, 2907, 3402, 3465, 4534 |
| BseRI | GAGGAG | 4 cut(s) | 64, 129, 2557, 3777 |
| BseXI | GCAGC | 1 cut(s) | 3342 |
| Bsh1236I | CGCG | 1 cut(s) | 2556 |
| BshFI | GGCC | 5 cut(s) | 739, 1572, 1786, 3267, 4327 |
| BshNI | GGYRCC | 1 cut(s) | 1331 |
| BsiHKAI | GWGCWC | 1 cut(s) | 3562 |
| BsiSI | CCGG | 1 cut(s) | 4045 |
| BslFI | GGGAC | 3 cut(s) | 2856, 4026, 4027 |
| BsmAI | GTCTC | 2 cut(s) | 141, 821 |
| BsmFI | GGGAC | 3 cut(s) | 2856, 4026, 4027 |
| BsmI | GAATGC | 2 cut(s) | 2725, 4186 |
| BsnI | GGCC | 5 cut(s) | 739, 1572, 1786, 3267, 4327 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1900, 3562 |
| Bsp1407I | TGTACA | 1 cut(s) | 3282 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2559 |
| BspACI | CCGC | 8 cut(s) | 588, 1796, 1900, 2840, 2879, 4029, 4099, 4581 |
| BspANI | GGCC | 5 cut(s) | 739, 1572, 1786, 3267, 4327 |
| BspCNI | CTCAG | 7 cut(s) | 1738, 2584, 2629, 2991, 3094, 3802, 4198 |
| BspFNI | CGCG | 1 cut(s) | 2556 |
| BspHI | TCATGA | 3 cut(s) | 172, 1353, 2608 |
| BspLI | GGNNCC | 8 cut(s) | 1333, 1680, 2469, 2844, 2884, 3323, 4422, 4578 |
| BspMI | ACCTGC | 1 cut(s) | 1668 |
| BspPI | GGATC | 7 cut(s) | 864, 1102, 2656, 4415, 4428, 4571, 4584 |
| BspT107I | GGYRCC | 1 cut(s) | 1331 |
| BsrDI | GCAATG | 1 cut(s) | 2195 |
| BsrGI | TGTACA | 1 cut(s) | 3282 |
| BsrI | ACTGG | 7 cut(s) | 97, 282, 1123, 2907, 3402, 3465, 4534 |
| BssECI | CCNNGG | 8 cut(s) | 740, 799, 2439, 2797, 2991, 3020, 4370, 4385 |
| BssSI | CACGAG | 2 cut(s) | 1150, 1962 |
| BssT1I | CCWWGG | 4 cut(s) | 799, 2991, 3020, 4370 |
| Bst2BI | CACGAG | 2 cut(s) | 1150, 1962 |
| Bst2UI | CCWGG | 6 cut(s) | 742, 2441, 3040, 3412, 4386, 4549 |
| Bst4CI | ACNGT | 7 cut(s) | 111, 245, 564, 2005, 2523, 2528, 2782 |
| Bst6I | CTCTTC | 2 cut(s) | 15, 2109 |
| BstAUI | TGTACA | 1 cut(s) | 3282 |
| BstBAI | YACGTR | 2 cut(s) | 2150, 3254 |
| BstC8I | GCNNGC | 4 cut(s) | 1175, 1202, 1900, 4379 |
| BstDSI | CCRYGG | 1 cut(s) | 2797 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 436 |
| BstF5I | GGATG | 8 cut(s) | 447, 1563, 2020, 2434, 2900, 2987, 3016, 3072 |
| BstFNI | CGCG | 1 cut(s) | 2556 |
| BstH2I | RGCGCY | 1 cut(s) | 4378 |
| BstHHI | GCGC | 3 cut(s) | 2558, 2873, 4377 |
| BstMAI | GTCTC | 2 cut(s) | 141, 821 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1414, 1802 |
| BstNI | CCWGG | 6 cut(s) | 742, 2441, 3040, 3412, 4386, 4549 |
| BstNSI | RCATGY | 5 cut(s) | 1130, 2624, 4502, 4595, 4619 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 605 |
| BstSCI | CCNGG | 7 cut(s) | 740, 2439, 3038, 3410, 4043, 4384, 4547 |
| BstSNI | TACGTA | 1 cut(s) | 3254 |
| BstUI | CGCG | 1 cut(s) | 2556 |
| BstV1I | GCAGC | 1 cut(s) | 3342 |
| BstV2I | GAAGAC | 5 cut(s) | 801, 811, 846, 873, 1929 |
| BstX2I | RGATCY | 7 cut(s) | 856, 1008, 1094, 2332, 2648, 4420, 4576 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 2422, 3472, 4377 |
| BstYI | RGATCY | 7 cut(s) | 856, 1008, 1094, 2332, 2648, 4420, 4576 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2978 |
| BsuRI | GGCC | 5 cut(s) | 739, 1572, 1786, 3267, 4327 |
| BtgI | CCRYGG | 1 cut(s) | 2797 |
| BtsCI | GGATG | 8 cut(s) | 447, 1563, 2020, 2434, 2900, 2987, 3016, 3072 |
| BtsI | GCAGTG | 1 cut(s) | 2880 |
| BtsIMutI | CAGTG | 6 cut(s) | 234, 967, 2787, 2880, 2914, 3472 |
| BveI | ACCTGC | 1 cut(s) | 1668 |
| Cac8I | GCNNGC | 4 cut(s) | 1175, 1202, 1900, 4379 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1908 |
| CciI | TCATGA | 3 cut(s) | 172, 1353, 2608 |
| CfoI | GCGC | 3 cut(s) | 2558, 2873, 4377 |
| Cfr13I | GGNCC | 6 cut(s) | 738, 1362, 1570, 1784, 2843, 3399 |
| CseI | GACGC | 1 cut(s) | 2667 |
| Csp6I | GTAC | 5 cut(s) | 560, 1332, 2524, 3255, 3283 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 210, 245 |
| CviQI | GTAC | 5 cut(s) | 560, 1332, 2524, 3255, 3283 |
| DraI | TTTAAA | 2 cut(s) | 364, 571 |
| DraIII | CACNNNGTG | 1 cut(s) | 4344 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 4020 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 4020 |
| EaeI | YGGCCR | 2 cut(s) | 3265, 4325 |
| Eam1104I | CTCTTC | 2 cut(s) | 15, 2109 |
| EarI | CTCTTC | 2 cut(s) | 15, 2109 |
| EciI | GGCGGA | 1 cut(s) | 4044 |
| Eco105I | TACGTA | 1 cut(s) | 3254 |
| Eco130I | CCWWGG | 4 cut(s) | 799, 2991, 3020, 4370 |
| Eco24I | GRGCYC | 1 cut(s) | 1900 |
| Eco47I | GGWCC | 3 cut(s) | 1362, 2843, 3399 |
| Eco57I | CTGAAG | 4 cut(s) | 210, 2522, 2709, 2991 |
| Eco81I | CCTNAGG | 1 cut(s) | 2978 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 436 |
| EcoRI | GAATTC | 1 cut(s) | 540 |
| EcoRII | CCWGG | 6 cut(s) | 740, 2439, 3038, 3410, 4384, 4547 |
| EcoT14I | CCWWGG | 4 cut(s) | 799, 2991, 3020, 4370 |
| EcoT22I | ATGCAT | 3 cut(s) | 2632, 3355, 3590 |
| EcoT38I | GRGCYC | 1 cut(s) | 1900 |
| ErhI | CCWWGG | 4 cut(s) | 799, 2991, 3020, 4370 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 282, 314, 2975, 3007, 3004, 3036, 4017, 4049 |
| FaqI | GGGAC | 3 cut(s) | 2856, 4026, 4027 |
| FauI | CCCGC | 5 cut(s) | 595, 1907, 2833, 2872, 4588 |
| FauNDI | CATATG | 3 cut(s) | 371, 768, 1575 |
| Fnu4HI | GCNGC | 1 cut(s) | 3331 |
| FokI | GGATG | 8 cut(s) | 454, 1570, 2007, 2421, 2887, 2974, 3003, 3059 |
| FriOI | GRGCYC | 1 cut(s) | 1900 |
| Fsp4HI | GCNGC | 1 cut(s) | 3331 |
| FspBI | CTAG | 7 cut(s) | 800, 2162, 2643, 3201, 3258, 4106, 4290 |
| FspI | TGCGCA | 1 cut(s) | 2872 |
| GlaI | GCGC | 3 cut(s) | 2557, 2872, 4376 |
| GluI | GCNGC | 1 cut(s) | 3331 |
| GsuI | CTGGAG | 2 cut(s) | 1290, 2890 |
| HaeII | RGCGCY | 1 cut(s) | 4378 |
| HaeIII | GGCC | 5 cut(s) | 739, 1572, 1786, 3267, 4327 |
| HapII | CCGG | 1 cut(s) | 4045 |
| HgaI | GACGC | 1 cut(s) | 2667 |
| HhaI | GCGC | 3 cut(s) | 2558, 2873, 4377 |
| Hin6I | GCGC | 3 cut(s) | 2556, 2871, 4375 |
| HinP1I | GCGC | 3 cut(s) | 2556, 2871, 4375 |
| HincII | GTYRAC | 2 cut(s) | 222, 3064 |
| HindII | GTYRAC | 2 cut(s) | 222, 3064 |
| HindIII | AAGCTT | 3 cut(s) | 1017, 2561, 4406 |
| HpaI | GTTAAC | 1 cut(s) | 3064 |
| HpaII | CCGG | 1 cut(s) | 4045 |
| HphI | GGTGA | 7 cut(s) | 99, 299, 1581, 2110, 2404, 2437, 2797 |
| Hpy166II | GTNNAC | 4 cut(s) | 222, 2512, 2657, 3064 |
| Hpy8I | GTNNAC | 4 cut(s) | 222, 2512, 2657, 3064 |
| HpyAV | CCTTC | 7 cut(s) | 284, 817, 1922, 2167, 2671, 3335, 4372 |
| HpyCH4III | ACNGT | 7 cut(s) | 111, 245, 564, 2005, 2523, 2528, 2782 |
| HpyCH4IV | ACGT | 5 cut(s) | 1076, 2149, 2730, 3253, 4416 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1414, 1802 |
| HpySE526I | ACGT | 5 cut(s) | 1076, 2149, 2730, 3253, 4416 |
| HspAI | GCGC | 3 cut(s) | 2556, 2871, 4375 |
| KpnI | GGTACC | 1 cut(s) | 1335 |
| KspAI | GTTAAC | 1 cut(s) | 3064 |
| LmnI | GCTCC | 2 cut(s) | 464, 3280 |
| Lsp1109I | GCAGC | 1 cut(s) | 3342 |
| LweI | GCATC | 7 cut(s) | 1548, 1783, 1984, 2029, 2293, 3340, 4363 |
| MaeI | CTAG | 7 cut(s) | 800, 2162, 2643, 3201, 3258, 4106, 4290 |
| MaeII | ACGT | 5 cut(s) | 1076, 2149, 2730, 3253, 4416 |
| MaeIII | GTNAC | 8 cut(s) | 99, 1527, 1655, 1987, 2389, 2763, 4459, 4501 |
| MfeI | CAATTG | 3 cut(s) | 953, 1644, 3548 |
| MflI | RGATCY | 7 cut(s) | 856, 1008, 1094, 2332, 2648, 4420, 4576 |
| MhlI | GDGCHC | 2 cut(s) | 1900, 3562 |
| MlsI | TGGCCA | 1 cut(s) | 4327 |
| MluNI | TGGCCA | 1 cut(s) | 4327 |
| MlyI | GAGTC | 4 cut(s) | 823, 1007, 2144, 2386 |
| MmeI | TCCRAC | 5 cut(s) | 1072, 1156, 1433, 2801, 2927 |
| Mox20I | TGGCCA | 1 cut(s) | 4327 |
| Mph1103I | ATGCAT | 3 cut(s) | 2632, 3355, 3590 |
| MroXI | GAANNNNTTC | 1 cut(s) | 294 |
| MscI | TGGCCA | 1 cut(s) | 4327 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1444, 2625, 4557 |
| Msp20I | TGGCCA | 1 cut(s) | 4327 |
| MspI | CCGG | 1 cut(s) | 4045 |
| MspR9I | CCNGG | 7 cut(s) | 742, 2441, 3040, 3412, 4045, 4386, 4549 |
| MunI | CAATTG | 3 cut(s) | 953, 1644, 3548 |
| Mva1269I | GAATGC | 2 cut(s) | 2725, 4186 |
| MvaI | CCWGG | 6 cut(s) | 742, 2441, 3040, 3412, 4386, 4549 |
| MvnI | CGCG | 1 cut(s) | 2556 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1414, 1802 |
| NciI | CCSGG | 1 cut(s) | 4045 |
| NdeI | CATATG | 3 cut(s) | 371, 768, 1575 |
| NlaIV | GGNNCC | 8 cut(s) | 1333, 1680, 2469, 2844, 2884, 3323, 4422, 4578 |
| NmuCI | GTSAC | 4 cut(s) | 99, 2389, 2763, 4501 |
| NsbI | TGCGCA | 1 cut(s) | 2872 |
| NsiI | ATGCAT | 3 cut(s) | 2632, 3355, 3590 |
| NspI | RCATGY | 5 cut(s) | 1130, 2624, 4502, 4595, 4619 |
| PagI | TCATGA | 3 cut(s) | 172, 1353, 2608 |
| PciI | ACATGT | 2 cut(s) | 1126, 4498 |
| PctI | GAATGC | 2 cut(s) | 2725, 4186 |
| PdmI | GAANNNNTTC | 1 cut(s) | 294 |
| PflFI | GACNNNGTC | 1 cut(s) | 4079 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 2446, 3179, 4344 |
| PfoI | TCCNGGA | 1 cut(s) | 4043 |
| PkrI | GCNGC | 1 cut(s) | 3332 |
| PleI | GAGTC | 4 cut(s) | 823, 1006, 2143, 2386 |
| PpsI | GAGTC | 4 cut(s) | 823, 1006, 2143, 2386 |
| Ppu21I | YACGTR | 2 cut(s) | 2150, 3254 |
| PscI | ACATGT | 2 cut(s) | 1126, 4498 |
| PshAI | GACNNNNGTC | 1 cut(s) | 605 |
| PshBI | ATTAAT | 1 cut(s) | 3690 |
| PsiI | TTATAA | 3 cut(s) | 3207, 3836, 3923 |
| Psp1406I | AACGTT | 1 cut(s) | 1076 |
| Psp6I | CCWGG | 6 cut(s) | 740, 2439, 3038, 3410, 4384, 4547 |
| PspGI | CCWGG | 6 cut(s) | 740, 2439, 3038, 3410, 4384, 4547 |
| PspN4I | GGNNCC | 8 cut(s) | 1333, 1680, 2469, 2844, 2884, 3323, 4422, 4578 |
| PspPI | GGNCC | 6 cut(s) | 738, 1362, 1570, 1784, 2843, 3399 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1908 |
| PsuI | RGATCY | 7 cut(s) | 856, 1008, 1094, 2332, 2648, 4420, 4576 |
| PsyI | GACNNNGTC | 1 cut(s) | 4079 |
| RsaI | GTAC | 5 cut(s) | 561, 1333, 2525, 3256, 3284 |
| RsaNI | GTAC | 5 cut(s) | 560, 1332, 2524, 3255, 3283 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1444, 2625, 4557 |
| SatI | GCNGC | 1 cut(s) | 3331 |
| Sau96I | GGNCC | 6 cut(s) | 738, 1362, 1570, 1784, 2843, 3399 |
| ScaI | AGTACT | 1 cut(s) | 561 |
| SchI | GAGTC | 4 cut(s) | 823, 1007, 2144, 2386 |
| ScrFI | CCNGG | 7 cut(s) | 742, 2441, 3040, 3412, 4045, 4386, 4549 |
| SduI | GDGCHC | 2 cut(s) | 1900, 3562 |
| SfaNI | GCATC | 7 cut(s) | 1548, 1783, 1984, 2029, 2293, 3340, 4363 |
| SinI | GGWCC | 3 cut(s) | 1362, 2843, 3399 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1444, 2625, 4557 |
| SnaBI | TACGTA | 1 cut(s) | 3254 |
| SpeI | ACTAGT | 1 cut(s) | 3257 |
| SsiI | CCGC | 8 cut(s) | 588, 1796, 1900, 2840, 2879, 4029, 4099, 4581 |
| SspI | AATATT | 2 cut(s) | 2128, 4565 |
| SspMI | CTAG | 7 cut(s) | 800, 2162, 2643, 3201, 3258, 4106, 4290 |
| StyD4I | CCNGG | 7 cut(s) | 740, 2439, 3038, 3410, 4043, 4384, 4547 |
| StyI | CCWWGG | 4 cut(s) | 799, 2991, 3020, 4370 |
| TaaI | ACNGT | 7 cut(s) | 111, 245, 564, 2005, 2523, 2528, 2782 |
| TaiI | ACGT | 5 cut(s) | 1079, 2152, 2733, 3256, 4419 |
| TaqI | TCGA | 6 cut(s) | 2166, 2293, 2383, 2395, 4055, 4441 |
| TatI | WGTACW | 2 cut(s) | 559, 3282 |
| TscAI | CASTG | 6 cut(s) | 234, 967, 2787, 2880, 2914, 3472 |
| TseFI | GTSAC | 4 cut(s) | 99, 2389, 2763, 4501 |
| TseI | GCWGC | 1 cut(s) | 3330 |
| Tsp45I | GTSAC | 4 cut(s) | 99, 2389, 2763, 4501 |
| TspGWI | ACGGA | 4 cut(s) | 617, 2786, 3037, 3267 |
| TspRI | CASTG | 6 cut(s) | 234, 967, 2787, 2880, 2914, 3472 |
| Tth111I | GACNNNGTC | 1 cut(s) | 4079 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 2446, 3179, 4344 |
| VpaK11BI | GGWCC | 3 cut(s) | 1362, 2843, 3399 |
| VspI | ATTAAT | 1 cut(s) | 3690 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 436 |
| XceI | RCATGY | 5 cut(s) | 1130, 2624, 4502, 4595, 4619 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1356 |
| XmaJI | CCTAGG | 1 cut(s) | 799 |
| XmnI | GAANNNNTTC | 1 cut(s) | 294 |
| XspI | CTAG | 7 cut(s) | 800, 2162, 2643, 3201, 3258, 4106, 4290 |
| ZrmI | AGTACT | 1 cut(s) | 561 |
| Zsp2I | ATGCAT | 3 cut(s) | 2632, 3355, 3590 |