Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

14860917 .. 14861333

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGTTAAAGAAGAACTGGGACCTGATCCTGACCAAATACAGCGCTGGGATGCTGCTCACCCGTTTCGTGAGAGACATTGTGACACCGGTAACAACGACAAGGCTGATGAAGTCGAAGTTTTCGATAGCCGAGTGAATCCTGCAATTTCTCTGACTTTGAAGCAAGGCATTGCTCAAGTCCAAATCAAGGCGAGGTGGTTTGAACACATGAGGCAACAGCAACCCCTTTTTGCGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009628 GO:0009987 GO:0016787 GO:0019538 GO:0033218 GO:0033554 GO:0034641 GO:0036293 GO:0036294 GO:0042221 GO:0042277 GO:0043167 GO:0043169 GO:0043170 GO:0043171 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0070006 GO:0070011 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ERAP1_C Peptidase_M1

Protein Analysis

80

Amino Acids

9.18

Weight (kDa)

5.49

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	233
AclWI	GGATC	1 cut(s)	20
AfeI	AGCGCT	1 cut(s)	44
AfiI	CCNNNNNNNGG	2 cut(s)	187, 232
AgeI	ACCGGT	1 cut(s)	86
AgsI	TTSAA	2 cut(s)	160, 203
Alw26I	GTCTC	1 cut(s)	67
AlwI	GGATC	1 cut(s)	20
Aor51HI	AGCGCT	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	53
AsiGI	ACCGGT	1 cut(s)	86
AspLEI	GCGC	1 cut(s)	45
AspS9I	GGNCC	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	50
AvaII	GGWCC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	67
BfoI	RGCGCY	1 cut(s)	46
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	21
BmrI	ACTGGG	1 cut(s)	26
BmsI	GCATC	1 cut(s)	40
BmuI	ACTGGG	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	159
BsaWI	WCCGGW	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 232
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	21
Bse3DI	GCAATG	1 cut(s)	168
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	2 cut(s)	187, 232
BseMI	GCAATG	1 cut(s)	168
BseNI	ACTGG	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	40
BseYI	CCCAGC	1 cut(s)	45
BshTI	ACCGGT	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	2 cut(s)	187, 232
BsmAI	GTCTC	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	33
Bsp143I	GATC	1 cut(s)	25
BspACI	CCGC	1 cut(s)	233
BspLI	GGNNCC	1 cut(s)	21
BspPI	GGATC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	21
BssAI	RCCGGY	1 cut(s)	86
BssMI	GATC	1 cut(s)	25
BstF5I	GGATG	1 cut(s)	55
BstH2I	RGCGCY	1 cut(s)	46
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	1 cut(s)	28
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	25
BstV1I	GCAGC	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	55
CfoI	GCGC	1 cut(s)	45
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	20
CspAI	ACCGGT	1 cut(s)	86
CviAII	CATG	1 cut(s)	208
CviJI	RGCY	2 cut(s)	104, 129
CviKI_1	RGCY	2 cut(s)	104, 129
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	20
Eco47III	AGCGCT	1 cut(s)	44
EcoO109I	RGGNCCY	1 cut(s)	20
FaeI	CATG	1 cut(s)	211
FaiI	YATR	1 cut(s)	209
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	1 cut(s)	207
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	1 cut(s)	54
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	1 cut(s)	54
GsaI	CCCAGC	1 cut(s)	49
HaeII	RGCGCY	1 cut(s)	46
HapII	CCGG	1 cut(s)	87
HhaI	GCGC	1 cut(s)	45
Hin1II	CATG	1 cut(s)	211
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HinfI	GANTC	1 cut(s)	136
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	1 cut(s)	50
Hpy188I	TCNGA	1 cut(s)	153
Hpy188III	TCNNGA	2 cut(s)	29, 68
HpyCH4V	TGCA	1 cut(s)	143
Hsp92II	CATG	1 cut(s)	211
HspAI	GCGC	1 cut(s)	43
Kzo9I	GATC	1 cut(s)	25
LpnPI	CCDG	6 cut(s)	2, 31, 36, 42, 100, 153
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	1 cut(s)	40
MaeIII	GTNAC	2 cut(s)	80, 89
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MboII	GAAGA	1 cut(s)	23
MluCI	AATT	1 cut(s)	144
MnlI	CCTC	2 cut(s)	186, 204
MseI	TTAA	1 cut(s)	6
MspI	CCGG	1 cut(s)	87
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	1 cut(s)	211
NlaIV	GGNNCC	1 cut(s)	21
NmeAIII	GCCGAG	1 cut(s)	155
NmuCI	GTSAC	1 cut(s)	80
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	136
PinAI	ACCGGT	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	55
PpuMI	RGGWCCY	1 cut(s)	20
Psp5II	RGGWCCY	1 cut(s)	20
PspFI	CCCAGC	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	1 cut(s)	20
PspPPI	RGGWCCY	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	1 cut(s)	25
Sau96I	GGNCC	1 cut(s)	20
SetI	ASST	2 cut(s)	25, 197
SfaNI	GCATC	1 cut(s)	40
SinI	GGWCC	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	174
SmoI	CTYRAG	1 cut(s)	174
Sse9I	AATT	1 cut(s)	144
SsiI	CCGC	1 cut(s)	233
TaqI	TCGA	2 cut(s)	114, 123
TasI	AATT	1 cut(s)	144
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	1 cut(s)	53
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	1 cut(s)	123
VpaK11BI	GGWCC	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.