pycom17g18880

Protein present in Fab1, YOTB, Vac1, and EEA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Forward (+)
16392314 .. 16393054
741 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 330 bp
ATGGCGACGGTGTTTAGGCTTAAGGAGGTGATAAGATGGAGCCGTACAGAGTTCGCGGCACCGCAGCCAAGTCGTCAAGTTCGACTTTGTTCGATGATTACAGGAGGTCGATCGATCGAACTGAGTGTCCCATCTGGGAAAACCATGCCGGTGAGCTCGAACAAGATCGTCCAGGCAGTACCCAAGACCGATACACAAGAAGACGCGAAGACTGGGGTGCAGAAGTTTCGGGTCAAGCTGTTGGCTAAAAGTGGAGGGCAGAGCGCTATGGATGTCCTTTGCCAGCTGTTTCTGGTATTCCTCGGGATGGTCATCTTGATGTTGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FYVE PTB

Protein Analysis

110

Amino Acids

11.99

Weight (kDa)

10.22

Isoelectric Point (pI)

55.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 58
AccII CGCG 2 cut(s) 56, 206
AciI CCGC 2 cut(s) 56, 62
AfaI GTAC 2 cut(s) 46, 180
AfeI AGCGCT 1 cut(s) 265
AfiI CCNNNNNNNGG 1 cut(s) 307
AflII CTTAAG 1 cut(s) 20
AjnI CCWGG 1 cut(s) 171
AloI GAACNNNNNNTCC 2 cut(s) 111, 143
AluBI AGCT 3 cut(s) 156, 238, 286
AluI AGCT 3 cut(s) 156, 238, 286
Alw21I GWGCWC 1 cut(s) 158
Ama87I CYCGRG 1 cut(s) 302
Aor51HI AGCGCT 1 cut(s) 265
ApeKI GCWGC 1 cut(s) 64
ArsI GACNNNNNNTTYG 2 cut(s) 111, 143
AspLEI GCGC 1 cut(s) 266
AsuHPI GGTGA 2 cut(s) 40, 163
AvaI CYCGRG 1 cut(s) 302
BanI GGYRCC 1 cut(s) 58
BanII GRGCYC 1 cut(s) 158
BbsI GAAGAC 2 cut(s) 207, 215
Bbv12I GWGCWC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 76
BccI CCATC 3 cut(s) 30, 139, 301
BceAI ACGGC 1 cut(s) 27
BcgI CGANNNNNNTGC 4 cut(s) 53, 87, 209, 243
BciT130I CCWGG 1 cut(s) 173
BfoI RGCGCY 1 cut(s) 267
BfrI CTTAAG 1 cut(s) 20
BisI GCNGC 2 cut(s) 57, 65
BlsI GCNGC 2 cut(s) 58, 66
Bme1390I CCNGG 1 cut(s) 173
BmeT110I CYCGRG 1 cut(s) 302
BmiI GGNNCC 2 cut(s) 41, 60
BmrFI CCNGG 1 cut(s) 173
BmrI ACTGGG 1 cut(s) 222
BmuI ACTGGG 1 cut(s) 222
BpiI GAAGAC 2 cut(s) 207, 215
Bsa29I ATCGAT 1 cut(s) 113
BsaBI GATNNNNATC 1 cut(s) 311
BsaJI CCNNGG 1 cut(s) 301
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse118I RCCGGY 1 cut(s) 148
Bse1I ACTGG 1 cut(s) 217
Bse8I GATNNNNATC 1 cut(s) 311
BseBI CCWGG 1 cut(s) 173
BseCI ATCGAT 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 301
BseGI GGATG 2 cut(s) 277, 312
BseJI GATNNNNATC 1 cut(s) 311
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 1 cut(s) 217
BseXI GCAGC 1 cut(s) 76
BsgI GTGCAG 1 cut(s) 239
Bsh1236I CGCG 2 cut(s) 56, 206
Bsh1285I CGRYCG 2 cut(s) 113, 117
BshNI GGYRCC 1 cut(s) 58
BshVI ATCGAT 1 cut(s) 113
BsiEI CGRYCG 2 cut(s) 113, 117
BsiHKAI GWGCWC 1 cut(s) 158
BsiHKCI CYCGRG 1 cut(s) 302
BsiSI CCGG 1 cut(s) 149
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 307
BsmFI GGGAC 1 cut(s) 113
BsoBI CYCGRG 1 cut(s) 302
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 3 cut(s) 110, 114, 165
BspACI CCGC 2 cut(s) 56, 62
BspCNI CTCAG 1 cut(s) 114
BspDI ATCGAT 1 cut(s) 113
BspFNI CGCG 2 cut(s) 56, 206
BspLI GGNNCC 2 cut(s) 41, 60
BspT107I GGYRCC 1 cut(s) 58
BspTI CTTAAG 1 cut(s) 20
BsrFI RCCGGY 1 cut(s) 148
BsrI ACTGG 1 cut(s) 217
BssAI RCCGGY 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 3 cut(s) 110, 114, 165
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 1 cut(s) 10
BstAFI CTTAAG 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 284
BstDEI CTNAG 1 cut(s) 122
BstF5I GGATG 2 cut(s) 277, 312
BstFNI CGCG 2 cut(s) 56, 206
BstH2I RGCGCY 1 cut(s) 267
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 3 cut(s) 113, 117, 168
BstMBI GATC 3 cut(s) 110, 114, 165
BstMCI CGRYCG 2 cut(s) 113, 117
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 171
BstUI CGCG 2 cut(s) 56, 206
BstV1I GCAGC 1 cut(s) 76
BstV2I GAAGAC 2 cut(s) 207, 215
Bsu15I ATCGAT 1 cut(s) 113
BsuTUI ATCGAT 1 cut(s) 113
BtsCI GGATG 2 cut(s) 277, 312
Cac8I GCNNGC 1 cut(s) 284
CfoI GCGC 1 cut(s) 266
Cfr10I RCCGGY 1 cut(s) 148
ClaI ATCGAT 1 cut(s) 113
CseI GACGC 1 cut(s) 212
Csp6I GTAC 2 cut(s) 45, 179
CviAII CATG 1 cut(s) 145
CviJI RGCY 7 cut(s) 19, 42, 67, 156, 238, 245, 286
CviKI_1 RGCY 7 cut(s) 19, 42, 67, 156, 238, 245, 286
CviQI GTAC 2 cut(s) 45, 179
DdeI CTNAG 1 cut(s) 122
DpnI GATC 3 cut(s) 112, 116, 167
DpnII GATC 3 cut(s) 110, 114, 165
Ecl136II GAGCTC 1 cut(s) 156
Eco24I GRGCYC 1 cut(s) 158
Eco47III AGCGCT 1 cut(s) 265
Eco53kI GAGCTC 1 cut(s) 156
Eco88I CYCGRG 1 cut(s) 302
EcoICRI GAGCTC 1 cut(s) 156
EcoRII CCWGG 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 158
FaeI CATG 1 cut(s) 148
FaiI YATR 2 cut(s) 146, 269
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FaqI GGGAC 1 cut(s) 113
FatI CATG 1 cut(s) 144
Fnu4HI GCNGC 2 cut(s) 57, 65
FokI GGATG 2 cut(s) 284, 319
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 2 cut(s) 57, 65
GlaI GCGC 1 cut(s) 265
GluI GCNGC 2 cut(s) 57, 65
HaeII RGCGCY 1 cut(s) 267
HapII CCGG 1 cut(s) 149
HgaI GACGC 1 cut(s) 212
HhaI GCGC 1 cut(s) 266
Hin1II CATG 1 cut(s) 148
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HpaII CCGG 1 cut(s) 149
HphI GGTGA 2 cut(s) 40, 163
Hpy188III TCNNGA 2 cut(s) 304, 316
Hpy99I CGWCG 1 cut(s) 10
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4V TGCA 1 cut(s) 220
HpyF3I CTNAG 1 cut(s) 122
Hsp92II CATG 1 cut(s) 148
HspAI GCGC 1 cut(s) 264
Kzo9I GATC 3 cut(s) 110, 114, 165
LmnI GCTCC 1 cut(s) 39
LpnPI CCDG 8 cut(s) 87, 120, 158, 162, 185, 198, 278, 296
Lsp1109I GCAGC 1 cut(s) 76
MalI GATC 3 cut(s) 112, 116, 167
MboI GATC 3 cut(s) 110, 114, 165
MboII GAAGA 2 cut(s) 212, 220
MhlI GDGCHC 1 cut(s) 158
MnlI CCTC 4 cut(s) 19, 98, 248, 311
MseI TTAA 2 cut(s) 21, 328
MslI CAYNNNNRTG 2 cut(s) 149, 317
MspA1I CMGCKG 1 cut(s) 286
MspCI CTTAAG 1 cut(s) 20
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 173
MvnI CGCG 2 cut(s) 56, 206
NdeII GATC 3 cut(s) 110, 114, 165
NlaIII CATG 1 cut(s) 148
NlaIV GGNNCC 2 cut(s) 41, 60
PcsI WCGNNNNNNNCGW 1 cut(s) 79
PkrI GCNGC 2 cut(s) 58, 66
Ple19I CGATCG 2 cut(s) 113, 117
Psp124BI GAGCTC 1 cut(s) 158
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 2 cut(s) 41, 60
PvuI CGATCG 2 cut(s) 113, 117
PvuII CAGCTG 1 cut(s) 286
RsaI GTAC 2 cut(s) 46, 180
RsaNI GTAC 2 cut(s) 45, 179
RseI CAYNNNNRTG 2 cut(s) 149, 317
SacI GAGCTC 1 cut(s) 158
SaqAI TTAA 2 cut(s) 21, 328
SatI GCNGC 2 cut(s) 57, 65
Sau3AI GATC 3 cut(s) 110, 114, 165
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 1 cut(s) 158
SetI ASST 5 cut(s) 30, 109, 158, 240, 288
SmiMI CAYNNNNRTG 2 cut(s) 149, 317
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
SsiI CCGC 2 cut(s) 56, 62
SstI GAGCTC 1 cut(s) 158
StyD4I CCNGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 10
TaqI TCGA 6 cut(s) 82, 92, 109, 113, 117, 158
TaqII GACCGA 1 cut(s) 203
TauI GCSGC 1 cut(s) 59
Tru1I TTAA 2 cut(s) 21, 328
Tru9I TTAA 2 cut(s) 21, 328
TseI GCWGC 1 cut(s) 64
Vha464I CTTAAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.