pycom17g19150

Belongs to the synaptobrevin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Reverse (-)
16805003 .. 16805783
781 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 591 bp
ATGGTACTAGAGCACTTCCAGTCTCCTCTCTCGTCCCTCCCTCCCTCTGTCTCATTCACTTTCCCAAATCCAATCCCAATTCGTTTTCTCAAGAATACAAAGAGGAGATTTTCTCTGCAAATTTGTGTGAGCTTTGAGAGGATGAAGGCTATGGAGGAAGTTGTGGAGGAAAAAGAAGTTAAGCCTTTGACTGCTGAGCAATTGGAGCTGTACGAGTCGCAGTCCGAGTCCGAGTCCAAATCCGACGACAGCGTAGACGAAGAAGAGGAGGACGCCGACGAGGACGACGACGCGGATGAGGGCGAAGAGGACAACGATGACGAAGAAGAGGACGACGACGTCAGCCCACGTCAGACAGCCCTCGGGCGCTCGGGCTGGCAGGAATCCACCGGCCTGGAGATCGATCCTGCTCGGGCTCGCTCGCCAGCCAACGCTGGACTTCCTCCCTCTGGCAATCAGGCACTGTTCCGCAGCCTGTCCCTCGAGCAGTTGCTCCCGCTGGAGCTGCTCTTAGTGTCTGAAGGGCTTGGGTCCTCGCCAGAACCTTCACAACGGAGCCTTTGGATCAATCATTTTGTGGCCGTTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Longin Synaptobrevin

Protein Analysis

197

Amino Acids

21.94

Weight (kDa)

4.17

Isoelectric Point (pI)

80.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 338
AatII GACGTC 1 cut(s) 342
AccI GTMKAC 1 cut(s) 255
AccII CGCG 1 cut(s) 293
AciI CCGC 3 cut(s) 293, 469, 497
AclWI GGATC 2 cut(s) 398, 572
AcoI YGGCCR 1 cut(s) 579
AcsI RAATTY 1 cut(s) 120
AcuI CTGAAG 1 cut(s) 540
AcyI GRCGYC 2 cut(s) 273, 339
AfaI GTAC 2 cut(s) 6, 212
AfiI CCNNNNNNNGG 1 cut(s) 449
AjiI CACGTC 1 cut(s) 350
AjnI CCWGG 1 cut(s) 393
AluBI AGCT 3 cut(s) 132, 208, 505
AluI AGCT 3 cut(s) 132, 208, 505
Alw21I GWGCWC 1 cut(s) 15
Alw26I GTCTC 2 cut(s) 27, 55
AlwI GGATC 2 cut(s) 398, 572
AlwNI CAGNNNCTG 1 cut(s) 463
Ama87I CYCGRG 4 cut(s) 362, 370, 411, 482
AoxI GGCC 2 cut(s) 391, 579
ApeKI GCWGC 2 cut(s) 471, 505
ApoI RAATTY 1 cut(s) 120
AspLEI GCGC 1 cut(s) 369
AspS9I GGNCC 1 cut(s) 531
AvaI CYCGRG 4 cut(s) 362, 370, 411, 482
AvaII GGWCC 1 cut(s) 531
BanII GRGCYC 1 cut(s) 418
Bbv12I GWGCWC 1 cut(s) 15
BbvI GCAGC 2 cut(s) 483, 492
BceAI ACGGC 1 cut(s) 566
BciT130I CCWGG 1 cut(s) 395
BcoDI GTCTC 2 cut(s) 27, 55
BfaI CTAG 1 cut(s) 8
BfoI RGCGCY 1 cut(s) 370
BisI GCNGC 2 cut(s) 472, 506
BlpI GCTNAGC 1 cut(s) 195
BlsI GCNGC 2 cut(s) 473, 507
Bme1390I CCNGG 1 cut(s) 395
Bme18I GGWCC 1 cut(s) 531
BmeT110I CYCGRG 4 cut(s) 362, 370, 411, 482
BmgBI CACGTC 1 cut(s) 350
BmgT120I GGNCC 1 cut(s) 531
BmiI GGNNCC 2 cut(s) 532, 557
BmrFI CCNGG 1 cut(s) 395
BplI GAGNNNNNCTC 2 cut(s) 97, 129
BpmI CTGGAG 2 cut(s) 416, 521
Bpu1102I GCTNAGC 1 cut(s) 195
BpuEI CTTGAG 1 cut(s) 74
Bsa29I ATCGAT 1 cut(s) 402
BsaHI GRCGYC 2 cut(s) 273, 339
BsaJI CCNNGG 1 cut(s) 361
Bsc4I CCNNNNNNNGG 1 cut(s) 449
Bse118I RCCGGY 1 cut(s) 389
Bse1I ACTGG 1 cut(s) 19
BseBI CCWGG 1 cut(s) 395
BseCI ATCGAT 1 cut(s) 402
BseDI CCNNGG 1 cut(s) 361
BseGI GGATG 2 cut(s) 147, 301
BseLI CCNNNNNNNGG 1 cut(s) 449
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 19
BseRI GAGGAG 3 cut(s) 15, 118, 281
BseXI GCAGC 2 cut(s) 483, 492
Bsh1236I CGCG 1 cut(s) 293
BshFI GGCC 2 cut(s) 393, 581
BshVI ATCGAT 1 cut(s) 402
BsiHKAI GWGCWC 1 cut(s) 15
BsiHKCI CYCGRG 4 cut(s) 362, 370, 411, 482
BsiSI CCGG 1 cut(s) 390
BslFI GGGAC 2 cut(s) 19, 463
BslI CCNNNNNNNGG 1 cut(s) 449
BsmAI GTCTC 2 cut(s) 27, 55
BsmFI GGGAC 2 cut(s) 19, 463
BsnI GGCC 2 cut(s) 393, 581
BsoBI CYCGRG 4 cut(s) 362, 370, 411, 482
Bsp1286I GDGCHC 2 cut(s) 15, 418
Bsp143I GATC 3 cut(s) 399, 403, 564
Bsp1720I GCTNAGC 1 cut(s) 195
BspACI CCGC 3 cut(s) 293, 469, 497
BspANI GGCC 2 cut(s) 393, 581
BspCNI CTCAG 1 cut(s) 187
BspDI ATCGAT 1 cut(s) 402
BspFNI CGCG 1 cut(s) 293
BspLI GGNNCC 2 cut(s) 532, 557
BspPI GGATC 2 cut(s) 398, 572
BsrFI RCCGGY 1 cut(s) 389
BsrI ACTGG 1 cut(s) 19
BssAI RCCGGY 1 cut(s) 389
BssECI CCNNGG 1 cut(s) 361
BssMI GATC 3 cut(s) 399, 403, 564
BssNI GRCGYC 2 cut(s) 273, 339
Bst2UI CCWGG 1 cut(s) 395
Bst4CI ACNGT 1 cut(s) 465
Bst6I CTCTTC 3 cut(s) 258, 300, 321
BstACI GRCGYC 2 cut(s) 273, 339
BstC8I GCNNGC 4 cut(s) 377, 418, 422, 426
BstDEI CTNAG 2 cut(s) 195, 511
BstF5I GGATG 2 cut(s) 147, 301
BstFNI CGCG 1 cut(s) 293
BstH2I RGCGCY 1 cut(s) 370
BstHHI GCGC 1 cut(s) 369
BstKTI GATC 3 cut(s) 402, 406, 567
BstMAI GTCTC 2 cut(s) 27, 55
BstMBI GATC 3 cut(s) 399, 403, 564
BstMWI GCNNNNNNNGC 2 cut(s) 205, 505
BstNI CCWGG 1 cut(s) 395
BstSCI CCNGG 1 cut(s) 393
BstUI CGCG 1 cut(s) 293
BstV1I GCAGC 2 cut(s) 483, 492
BstXI CCANNNNNNTGG 1 cut(s) 394
Bsu15I ATCGAT 1 cut(s) 402
BsuRI GGCC 2 cut(s) 393, 581
BsuTUI ATCGAT 1 cut(s) 402
BtrI CACGTC 1 cut(s) 350
BtsCI GGATG 2 cut(s) 147, 301
BtsIMutI CAGTG 1 cut(s) 461
Cac8I GCNNGC 4 cut(s) 377, 418, 422, 426
CaiI CAGNNNCTG 1 cut(s) 463
CfoI GCGC 1 cut(s) 369
Cfr10I RCCGGY 1 cut(s) 389
Cfr13I GGNCC 1 cut(s) 531
ClaI ATCGAT 1 cut(s) 402
CseI GACGC 2 cut(s) 281, 299
Csp6I GTAC 2 cut(s) 5, 211
CviQI GTAC 2 cut(s) 5, 211
DdeI CTNAG 2 cut(s) 195, 511
DpnI GATC 3 cut(s) 401, 405, 566
DpnII GATC 3 cut(s) 399, 403, 564
DrdI GACNNNNNNGTC 1 cut(s) 338
DseDI GACNNNNNNGTC 1 cut(s) 338
EaeI YGGCCR 1 cut(s) 579
Eam1104I CTCTTC 3 cut(s) 258, 300, 321
EarI CTCTTC 3 cut(s) 258, 300, 321
Eco24I GRGCYC 1 cut(s) 418
Eco47I GGWCC 1 cut(s) 531
Eco57I CTGAAG 1 cut(s) 540
Eco88I CYCGRG 4 cut(s) 362, 370, 411, 482
EcoO109I RGGNCCY 1 cut(s) 531
EcoRII CCWGG 1 cut(s) 393
EcoT38I GRGCYC 1 cut(s) 418
FaiI YATR 1 cut(s) 152
FaqI GGGAC 2 cut(s) 19, 463
FauI CCCGC 1 cut(s) 504
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 2 cut(s) 472, 506
FokI GGATG 2 cut(s) 154, 308
FriOI GRGCYC 1 cut(s) 418
Fsp4HI GCNGC 2 cut(s) 472, 506
FspBI CTAG 1 cut(s) 8
GlaI GCGC 1 cut(s) 368
GluI GCNGC 2 cut(s) 472, 506
GsuI CTGGAG 2 cut(s) 416, 521
HaeII RGCGCY 1 cut(s) 370
HaeIII GGCC 2 cut(s) 393, 581
HapII CCGG 1 cut(s) 390
HgaI GACGC 2 cut(s) 281, 299
HhaI GCGC 1 cut(s) 369
Hin1I GRCGYC 2 cut(s) 273, 339
Hin6I GCGC 1 cut(s) 367
HinP1I GCGC 1 cut(s) 367
HinfI GANTC 4 cut(s) 215, 227, 233, 383
HpaII CCGG 1 cut(s) 390
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 5 cut(s) 226, 232, 244, 354, 520
Hpy188III TCNNGA 1 cut(s) 91
Hpy8I GTNNAC 1 cut(s) 256
Hpy99I CGWCG 6 cut(s) 248, 281, 290, 293, 338, 341
HpyAV CCTTC 3 cut(s) 139, 515, 555
HpyCH4III ACNGT 1 cut(s) 465
HpyCH4IV ACGT 2 cut(s) 339, 349
HpyCH4V TGCA 1 cut(s) 118
HpyF10VI GCNNNNNNNGC 2 cut(s) 205, 505
HpyF3I CTNAG 2 cut(s) 195, 511
HpySE526I ACGT 2 cut(s) 339, 349
Hsp92I GRCGYC 2 cut(s) 273, 339
HspAI GCGC 1 cut(s) 367
Kzo9I GATC 3 cut(s) 399, 403, 564
LmnI GCTCC 4 cut(s) 205, 498, 502, 555
Lsp1109I GCAGC 2 cut(s) 483, 492
MaeI CTAG 1 cut(s) 8
MaeII ACGT 2 cut(s) 339, 349
MalI GATC 3 cut(s) 401, 405, 566
MboI GATC 3 cut(s) 399, 403, 564
MboII GAAGA 5 cut(s) 272, 275, 317, 335, 338
MfeI CAATTG 1 cut(s) 200
MhlI GDGCHC 2 cut(s) 15, 418
MluCI AATT 3 cut(s) 78, 120, 200
MlyI GAGTC 3 cut(s) 224, 236, 242
MmeI TCCRAC 1 cut(s) 267
MseI TTAA 1 cut(s) 180
MspA1I CMGCKG 1 cut(s) 499
MspI CCGG 1 cut(s) 390
MspR9I CCNGG 1 cut(s) 395
MunI CAATTG 1 cut(s) 200
MvaI CCWGG 1 cut(s) 395
MvnI CGCG 1 cut(s) 293
MwoI GCNNNNNNNGC 2 cut(s) 205, 505
NdeII GATC 3 cut(s) 399, 403, 564
NlaIV GGNNCC 2 cut(s) 532, 557
PaeR7I CTCGAG 1 cut(s) 482
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PfeI GAWTC 1 cut(s) 383
PflFI GACNNNGTC 1 cut(s) 338
PkrI GCNGC 2 cut(s) 473, 507
PleI GAGTC 3 cut(s) 223, 235, 241
PpsI GAGTC 3 cut(s) 223, 235, 241
PpuMI RGGWCCY 1 cut(s) 531
Psp5II RGGWCCY 1 cut(s) 531
Psp6I CCWGG 1 cut(s) 393
PspGI CCWGG 1 cut(s) 393
PspN4I GGNNCC 2 cut(s) 532, 557
PspPI GGNCC 1 cut(s) 531
PspPPI RGGWCCY 1 cut(s) 531
PspXI VCTCGAGB 1 cut(s) 482
PstNI CAGNNNCTG 1 cut(s) 463
PsyI GACNNNGTC 1 cut(s) 338
RsaI GTAC 2 cut(s) 6, 212
RsaNI GTAC 2 cut(s) 5, 211
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 2 cut(s) 472, 506
Sau3AI GATC 3 cut(s) 399, 403, 564
Sau96I GGNCC 1 cut(s) 531
SchI GAGTC 3 cut(s) 224, 236, 242
ScrFI CCNGG 1 cut(s) 395
SduI GDGCHC 2 cut(s) 15, 418
SetI ASST 6 cut(s) 134, 210, 342, 352, 507, 547
Sfr274I CTCGAG 1 cut(s) 482
SinI GGWCC 1 cut(s) 531
SlaI CTCGAG 1 cut(s) 482
SmlI CTYRAG 2 cut(s) 89, 482
SmoI CTYRAG 2 cut(s) 89, 482
Sse9I AATT 3 cut(s) 78, 120, 200
SsiI CCGC 3 cut(s) 293, 469, 497
SspMI CTAG 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 393
TaaI ACNGT 1 cut(s) 465
TaiI ACGT 2 cut(s) 342, 352
TaqI TCGA 2 cut(s) 402, 483
TasI AATT 3 cut(s) 78, 120, 200
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 1 cut(s) 468
TseI GCWGC 2 cut(s) 471, 505
TspDTI ATGAA 1 cut(s) 158
TspGWI ACGGA 1 cut(s) 568
TspRI CASTG 1 cut(s) 468
Tth111I GACNNNGTC 1 cut(s) 338
VpaK11BI GGWCC 1 cut(s) 531
XapI RAATTY 1 cut(s) 120
XhoI CTCGAG 1 cut(s) 482
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 1 cut(s) 8
ZraI GACGTC 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.