Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

18357971 .. 18358540

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGATAACACGATCAACTATAGTCTATAGCACGTATGAGACATTAGCCGGTCATGTTTGGAAATGTGGATCCAACTCAGGTGAACTTCCCGATGATCGAAAGAACAAACTACATGTTGTTGATGGACGGTCCCGACGGCAACCCCCACTCCCACTTTGTTTCTTTGGTAATGTTATTGTCACACAAATTGACTTCCTTGAGCTTCAGCCTGATCTTTCAGCTCTTGTTCGTGGGGCTGGTTCTCTTACGTCTCCTACTATTGGAATAACTAGTTGGGTTGGGGTTCCAACTTATGATTTTTTGGATGGGGTCGACCTATTTTTGTGGGACCTTGTGGAATTCCATCTGAGGGGAAGGCTTTCGTATTCGGGAAGTGCGAATAATGATGGGAGTTTATCAGTGGCAATATGTCTGCAATCCGAGCATATGAAATCATTTTCAAAGTTGTTTTATGACATATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

155

Amino Acids

17.15

Weight (kDa)

5.73

Isoelectric Point (pI)

37.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	8 - 62	3e-07	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	312
AclWI	GGATC	2 cut(s)	63, 76
AcsI	RAATTY	1 cut(s)	338
AcuI	CTGAAG	1 cut(s)	188
AfiI	CCNNNNNNNGG	2 cut(s)	260, 349
AflIII	ACRYGT	1 cut(s)	112
AgsI	TTSAA	1 cut(s)	441
AhlI	ACTAGT	1 cut(s)	269
AjuI	GAANNNNNNNTTGG	2 cut(s)	256, 288
AluBI	AGCT	2 cut(s)	202, 221
AluI	AGCT	2 cut(s)	202, 221
Alw26I	GTCTC	2 cut(s)	32, 255
AlwI	GGATC	2 cut(s)	63, 76
ApoI	RAATTY	1 cut(s)	338
Asp700I	GAANNNNTTC	1 cut(s)	358
AspS9I	GGNCC	2 cut(s)	129, 328
AsuHPI	GGTGA	1 cut(s)	92
AvaII	GGWCC	2 cut(s)	129, 328
BamHI	GGATCC	1 cut(s)	68
BccI	CCATC	4 cut(s)	116, 299, 351, 380
BceAI	ACGGC	1 cut(s)	152
BcoDI	GTCTC	2 cut(s)	32, 255
BcuI	ACTAGT	1 cut(s)	269
BfaI	CTAG	1 cut(s)	270
BfmI	CTRYAG	2 cut(s)	18, 25
Bme18I	GGWCC	2 cut(s)	129, 328
BmgT120I	GGNCC	2 cut(s)	129, 328
BmiI	GGNNCC	4 cut(s)	70, 131, 285, 329
BpuEI	CTTGAG	1 cut(s)	218
BsaAI	YACGTR	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bsc4I	CCNNNNNNNGG	2 cut(s)	260, 349
Bse118I	RCCGGY	1 cut(s)	47
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	2 cut(s)	260, 349
BseMII	CTCAG	2 cut(s)	90, 338
BsiSI	CCGG	1 cut(s)	48
BslFI	GGGAC	2 cut(s)	115, 341
BslI	CCNNNNNNNGG	2 cut(s)	260, 349
BsmAI	GTCTC	2 cut(s)	32, 255
BsmBI	CGTCTC	1 cut(s)	255
BsmFI	GGGAC	2 cut(s)	115, 341
Bsp143I	GATC	4 cut(s)	11, 68, 94, 211
BspCNI	CTCAG	2 cut(s)	89, 339
BspLI	GGNNCC	4 cut(s)	70, 131, 285, 329
BspPI	GGATC	2 cut(s)	63, 76
BsrFI	RCCGGY	1 cut(s)	47
BssAI	RCCGGY	1 cut(s)	47
BssMI	GATC	4 cut(s)	11, 68, 94, 211
Bst4CI	ACNGT	1 cut(s)	129
BstBAI	YACGTR	1 cut(s)	33
BstDEI	CTNAG	2 cut(s)	76, 347
BstF5I	GGATG	1 cut(s)	310
BstKTI	GATC	4 cut(s)	14, 71, 97, 214
BstMAI	GTCTC	2 cut(s)	32, 255
BstMBI	GATC	4 cut(s)	11, 68, 94, 211
BstMWI	GCNNNNNNNGC	1 cut(s)	421
BstNSI	RCATGY	1 cut(s)	116
BstSFI	CTRYAG	2 cut(s)	18, 25
BstX2I	RGATCY	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	68
BtsCI	GGATG	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	405
Cfr10I	RCCGGY	1 cut(s)	47
Cfr13I	GGNCC	2 cut(s)	129, 328
CviAII	CATG	2 cut(s)	53, 113
CviJI	RGCY	6 cut(s)	47, 202, 208, 221, 236, 358
CviKI_1	RGCY	6 cut(s)	47, 202, 208, 221, 236, 358
DdeI	CTNAG	2 cut(s)	76, 347
DpnI	GATC	4 cut(s)	13, 70, 96, 213
DpnII	GATC	4 cut(s)	11, 68, 94, 211
Eco47I	GGWCC	2 cut(s)	129, 328
Eco57I	CTGAAG	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	328
EcoRI	GAATTC	1 cut(s)	338
Esp3I	CGTCTC	1 cut(s)	255
FaeI	CATG	2 cut(s)	56, 116
FaqI	GGGAC	2 cut(s)	115, 341
FatI	CATG	2 cut(s)	52, 112
FauNDI	CATATG	1 cut(s)	426
FblI	GTMKAC	1 cut(s)	312
FokI	GGATG	1 cut(s)	317
FspBI	CTAG	1 cut(s)	270
HapII	CCGG	1 cut(s)	48
Hin1II	CATG	2 cut(s)	56, 116
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	2 cut(s)	83, 313
Hpy188I	TCNGA	2 cut(s)	348, 421
Hpy188III	TCNNGA	3 cut(s)	89, 132, 369
Hpy8I	GTNNAC	2 cut(s)	83, 313
Hpy99I	CGWCG	1 cut(s)	138
HpyAV	CCTTC	1 cut(s)	348
HpyCH4III	ACNGT	1 cut(s)	129
HpyCH4IV	ACGT	2 cut(s)	32, 248
HpyCH4V	TGCA	1 cut(s)	415
HpyF10VI	GCNNNNNNNGC	1 cut(s)	421
HpyF3I	CTNAG	2 cut(s)	76, 347
HpySE526I	ACGT	2 cut(s)	32, 248
Hsp92II	CATG	2 cut(s)	56, 116
Kzo9I	GATC	4 cut(s)	11, 68, 94, 211
LpnPI	CCDG	4 cut(s)	61, 63, 222, 222
MaeI	CTAG	1 cut(s)	270
MaeII	ACGT	2 cut(s)	32, 248
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	4 cut(s)	13, 70, 96, 213
MboI	GATC	4 cut(s)	11, 68, 94, 211
MflI	RGATCY	1 cut(s)	68
MluCI	AATT	2 cut(s)	186, 338
MmeI	TCCRAC	2 cut(s)	96, 311
MnlI	CCTC	1 cut(s)	342
MroXI	GAANNNNTTC	1 cut(s)	358
MspI	CCGG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	421
NdeI	CATATG	1 cut(s)	426
NdeII	GATC	4 cut(s)	11, 68, 94, 211
NlaIII	CATG	2 cut(s)	56, 116
NlaIV	GGNNCC	4 cut(s)	70, 131, 285, 329
NmuCI	GTSAC	1 cut(s)	178
NspI	RCATGY	1 cut(s)	116
PciI	ACATGT	1 cut(s)	112
PcsI	WCGNNNNNNNCGW	1 cut(s)	374
PdmI	GAANNNNTTC	1 cut(s)	358
Ppu21I	YACGTR	1 cut(s)	33
PpuMI	RGGWCCY	1 cut(s)	328
PscI	ACATGT	1 cut(s)	112
Psp5II	RGGWCCY	1 cut(s)	328
PspN4I	GGNNCC	4 cut(s)	70, 131, 285, 329
PspPI	GGNCC	2 cut(s)	129, 328
PspPPI	RGGWCCY	1 cut(s)	328
PsuI	RGATCY	1 cut(s)	68
SalI	GTCGAC	1 cut(s)	311
Sau3AI	GATC	4 cut(s)	11, 68, 94, 211
Sau96I	GGNCC	2 cut(s)	129, 328
SetI	ASST	7 cut(s)	35, 82, 204, 223, 251, 318, 333
SfcI	CTRYAG	2 cut(s)	18, 25
SinI	GGWCC	2 cut(s)	129, 328
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SpeI	ACTAGT	1 cut(s)	269
Sse9I	AATT	2 cut(s)	186, 338
SspMI	CTAG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	129
TaiI	ACGT	2 cut(s)	35, 251
TaqI	TCGA	2 cut(s)	97, 312
TasI	AATT	2 cut(s)	186, 338
TscAI	CASTG	1 cut(s)	405
TseFI	GTSAC	1 cut(s)	178
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	1 cut(s)	443
TspRI	CASTG	1 cut(s)	405
VpaK11BI	GGWCC	2 cut(s)	129, 328
XapI	RAATTY	1 cut(s)	338
XceI	RCATGY	1 cut(s)	116
XmiI	GTMKAC	1 cut(s)	312
XmnI	GAANNNNTTC	1 cut(s)	358
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.