Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

19091229 .. 19093165

Gene Structure 1937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGCACAGCAAAGATGTAGTCTTGCTTGCCTTCACTGGGTTCCGTGAGTTTCTGGCTTCGAATATTCCTGTTGTTTTAGTTGAGAACAGTGGGAGATGTAACAAGAATGAAAGTGACGAAAAGGTTCTTCCAAATGGAACGGCTTGGATATCTCATTTGGTCCAAACAATGACAGAAGTTATCTTGAATGGAAGCAAGTCTATTCACGTTGACAAGAAGTTGATCGAGGGACCTAACCCCAATGACAAGGGGAAGTTGTTGATCCCTCTGTTTTTAGCGATCCAGTATTTCTGTGCCATTAAGCCGATAGAACGAGCAATCAAGAGTGATATTGCAAAAGAGAGTAGACCGTCATGGGAGATGCGGGATTCCAGTGCGGCCGGTCGCAAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019750 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042170 GO:0042802 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIG1

Protein Analysis

132

Amino Acids

14.61

Weight (kDa)

8.95

Isoelectric Point (pI)

30.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	346
AciI	CCGC	2 cut(s)	364, 377
AclWI	GGATC	2 cut(s)	256, 274
AcoI	YGGCCR	1 cut(s)	378
AfiI	CCNNNNNNNGG	1 cut(s)	36
AgsI	TTSAA	1 cut(s)	187
AlwI	GGATC	2 cut(s)	256, 274
AoxI	GGCC	1 cut(s)	378
ArsI	GACNNNNNNTTYG	1 cut(s)	35
Asp700I	GAANNNNTTC	1 cut(s)	123
AspS9I	GGNCC	2 cut(s)	160, 230
AsuII	TTCGAA	1 cut(s)	59
AvaII	GGWCC	2 cut(s)	160, 230
BceAI	ACGGC	1 cut(s)	156
BisI	GCNGC	1 cut(s)	378
BlsI	GCNGC	1 cut(s)	379
Bme18I	GGWCC	2 cut(s)	160, 230
BmgT120I	GGNCC	2 cut(s)	160, 230
BmiI	GGNNCC	2 cut(s)	41, 231
BmrI	ACTGGG	1 cut(s)	45
BmsI	GCATC	1 cut(s)	351
BmuI	ACTGGG	1 cut(s)	45
Bpu14I	TTCGAA	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	1 cut(s)	36
Bse118I	RCCGGY	1 cut(s)	380
Bse1I	ACTGG	3 cut(s)	40, 283, 372
BseLI	CCNNNNNNNGG	1 cut(s)	36
BseNI	ACTGG	3 cut(s)	40, 283, 372
BseX3I	CGGCCG	1 cut(s)	378
Bsh1285I	CGRYCG	2 cut(s)	381, 385
BshFI	GGCC	1 cut(s)	380
BsiEI	CGRYCG	2 cut(s)	381, 385
BsiSI	CCGG	1 cut(s)	381
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	36
BsmFI	GGGAC	1 cut(s)	243
BsnI	GGCC	1 cut(s)	380
Bsp119I	TTCGAA	1 cut(s)	59
Bsp143I	GATC	3 cut(s)	222, 261, 279
BspACI	CCGC	2 cut(s)	364, 377
BspANI	GGCC	1 cut(s)	380
BspLI	GGNNCC	2 cut(s)	41, 231
BspPI	GGATC	2 cut(s)	256, 274
BspT104I	TTCGAA	1 cut(s)	59
BsrFI	RCCGGY	1 cut(s)	380
BsrI	ACTGG	3 cut(s)	40, 283, 372
BssAI	RCCGGY	1 cut(s)	380
BssMI	GATC	3 cut(s)	222, 261, 279
Bst4CI	ACNGT	2 cut(s)	89, 351
BstBI	TTCGAA	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	27
BstKTI	GATC	3 cut(s)	225, 264, 282
BstMBI	GATC	3 cut(s)	222, 261, 279
BstMCI	CGRYCG	2 cut(s)	381, 385
BstZI	CGGCCG	1 cut(s)	378
BsuRI	GGCC	1 cut(s)	380
BtsIMutI	CAGTG	3 cut(s)	33, 94, 379
Cac8I	GCNNGC	1 cut(s)	27
Cfr10I	RCCGGY	1 cut(s)	380
Cfr13I	GGNCC	2 cut(s)	160, 230
CviAII	CATG	1 cut(s)	354
CviJI	RGCY	4 cut(s)	56, 143, 304, 380
CviKI_1	RGCY	4 cut(s)	56, 143, 304, 380
DpnI	GATC	3 cut(s)	224, 263, 281
DpnII	GATC	3 cut(s)	222, 261, 279
EaeI	YGGCCR	1 cut(s)	378
EagI	CGGCCG	1 cut(s)	378
EclXI	CGGCCG	1 cut(s)	378
Eco32I	GATATC	1 cut(s)	150
Eco47I	GGWCC	2 cut(s)	160, 230
Eco52I	CGGCCG	1 cut(s)	378
EcoO109I	RGGNCCY	1 cut(s)	230
EcoRV	GATATC	1 cut(s)	150
FaeI	CATG	1 cut(s)	357
FaiI	YATR	1 cut(s)	355
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	1 cut(s)	353
FauI	CCCGC	1 cut(s)	357
FblI	GTMKAC	1 cut(s)	346
Fnu4HI	GCNGC	1 cut(s)	378
Fsp4HI	GCNGC	1 cut(s)	378
GluI	GCNGC	1 cut(s)	378
HaeIII	GGCC	1 cut(s)	380
HapII	CCGG	1 cut(s)	381
Hin1II	CATG	1 cut(s)	357
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	1 cut(s)	368
HpaII	CCGG	1 cut(s)	381
Hpy166II	GTNNAC	2 cut(s)	211, 347
Hpy188I	TCNGA	1 cut(s)	395
Hpy188III	TCNNGA	2 cut(s)	184, 322
Hpy8I	GTNNAC	2 cut(s)	211, 347
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	2 cut(s)	89, 351
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	2 cut(s)	4, 335
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	357
Kzo9I	GATC	3 cut(s)	222, 261, 279
LpnPI	CCDG	5 cut(s)	21, 38, 81, 296, 385
LweI	GCATC	1 cut(s)	351
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	2 cut(s)	98, 113
MalI	GATC	3 cut(s)	224, 263, 281
MboI	GATC	3 cut(s)	222, 261, 279
MboII	GAAGA	1 cut(s)	119
MnlI	CCTC	2 cut(s)	220, 276
MroXI	GAANNNNTTC	1 cut(s)	123
MseI	TTAA	1 cut(s)	300
MspI	CCGG	1 cut(s)	381
NdeII	GATC	3 cut(s)	222, 261, 279
NlaIII	CATG	1 cut(s)	357
NlaIV	GGNNCC	2 cut(s)	41, 231
NmuCI	GTSAC	1 cut(s)	113
NspV	TTCGAA	1 cut(s)	59
PdmI	GAANNNNTTC	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	368
PkrI	GCNGC	1 cut(s)	379
PpuMI	RGGWCCY	1 cut(s)	230
Psp5II	RGGWCCY	1 cut(s)	230
PspN4I	GGNNCC	2 cut(s)	41, 231
PspPI	GGNCC	2 cut(s)	160, 230
PspPPI	RGGWCCY	1 cut(s)	230
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	1 cut(s)	378
Sau3AI	GATC	3 cut(s)	222, 261, 279
Sau96I	GGNCC	2 cut(s)	160, 230
SetI	ASST	3 cut(s)	126, 210, 235
SfaNI	GCATC	1 cut(s)	351
SfuI	TTCGAA	1 cut(s)	59
SinI	GGWCC	2 cut(s)	160, 230
SsiI	CCGC	2 cut(s)	364, 377
SspI	AATATT	1 cut(s)	64
TaaI	ACNGT	2 cut(s)	89, 351
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	2 cut(s)	59, 225
TauI	GCSGC	1 cut(s)	380
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	3 cut(s)	40, 94, 379
TseFI	GTSAC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	1 cut(s)	123
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	3 cut(s)	40, 94, 379
VpaK11BI	GGWCC	2 cut(s)	160, 230
XmiI	GTMKAC	1 cut(s)	346
XmnI	GAANNNNTTC	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.