Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

19398942 .. 19401374

Gene Structure 2433 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGCCTGTATTTTACATGACACTGGGTTTGAAAACCTTCCCCTTGATTTTATTTTTACAAATTTTATTTTTTTTCACAAAAACTAGTCGCTGTTTCTCTCAGTCTCTCTCTCACCGACTTCTTTCCCCAAAATTTCCCCACCTCCTTCTCCGTCCGTGGCCTCAGGACAAGGGATTGCAATTCCGGTGGCAGCACCCTGCAAGTCGGCGAGGGATGGACGCGGTGTCGCTGTGCAGCAGCAGCAGCACAGAGCTTTCGCCGGAGGAAGAAAGGATTTTGATACGAGACATTGCTTTGGCTGCTGAAGCCAATTCCAAAGAGGGCGATGTCTTCTACTTGCTCACCCAAAGATGGTGGCAACGTTGGATTGATTATGTGAACCATGACCAACCCAATAACCCGAATGATGCATCCTCGGTGTCGGAGCATTGTGATTCGCCCGGTTCCAGTGCCTTAAAGAGGCCTGCTGGTATTGATAATTCTGACTTGATATATGATGCAGCATCAGAGGACACCAATTCGGGCATTGAGATACATGATACGTTACTGGAAGGCCGCGATTATGTCTTGCTCCCGCATGAAGTTTGGAACCGATTGCATACATGGTATGGTGGTGGTCCAACATTGCCAAGGAAAGTGATTAGTTCAGGTCTTTCTCAGCCGGAGATGGCAGTAGAAGTGTACCCTCTGCGGCTTCAATTACTTGTGATGCCAAAAGGTGACCGCTCTACCGTACGAATAAGCAAAAAGGAAACCATTGCAGAGCTTCACAGAAGAGCTTGTGATATCTTTGATCTTAGCTTGGAACAAGTGTGCATTTGGGATTACTATGGACGCCGGAAACATGCCCTGATGAACGACATGGATAAAACTCTTGATGATGCCAATATACAGATGGATCAGGATTTTGCAAGAGCATCTGTTTTGCGTTGCACACTTCTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0019538 GO:0019941 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

DUSP UCH USP7_C2

Protein Analysis

316

Amino Acids

36.13

Weight (kDa)

6.07

Isoelectric Point (pI)

67.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUSP	PF06337	108 - 214	3.7e-20	DUSP domain
Ubiquitin_UBP8	PF25242	232 - 286	8.9e-12	UBP8-like, ubiquitin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	726
AccII	CGCG	2 cut(s)	221, 558
AciI	CCGC	5 cut(s)	221, 556, 575, 691, 724
AclI	AACGTT	1 cut(s)	361
AclWI	GGATC	1 cut(s)	906
AcsI	RAATTY	2 cut(s)	60, 131
AcuI	CTGAAG	1 cut(s)	324
AcyI	GRCGYC	1 cut(s)	835
AfaI	GTAC	2 cut(s)	683, 735
AfiI	CCNNNNNNNGG	2 cut(s)	351, 459
AgsI	TTSAA	2 cut(s)	31, 698
AhdI	GACNNNNNGTC	1 cut(s)	223
AhlI	ACTAGT	1 cut(s)	83
AluBI	AGCT	4 cut(s)	253, 766, 779, 801
AluI	AGCT	4 cut(s)	253, 766, 779, 801
Alw26I	GTCTC	2 cut(s)	108, 279
AlwI	GGATC	1 cut(s)	906
AoxI	GGCC	3 cut(s)	158, 461, 553
ApeKI	GCWGC	7 cut(s)	190, 234, 237, 240, 243, 299, 500
ApoI	RAATTY	2 cut(s)	60, 131
ArsI	GACNNNNNNTTYG	2 cut(s)	10, 42
Asp700I	GAANNNNTTC	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	617
AsuC2I	CCSGG	1 cut(s)	441
AsuHPI	GGTGA	3 cut(s)	104, 334, 731
AvaII	GGWCC	1 cut(s)	617
AxyI	CCTNAGG	1 cut(s)	162
BbsI	GAAGAC	1 cut(s)	322
BbvI	GCAGC	7 cut(s)	202, 246, 249, 252, 255, 286, 512
BccI	CCATC	4 cut(s)	208, 345, 661, 889
BcnI	CCSGG	1 cut(s)	441
BcoDI	GTCTC	2 cut(s)	108, 279
BcuI	ACTAGT	1 cut(s)	83
BfaI	CTAG	1 cut(s)	84
BisI	GCNGC	9 cut(s)	191, 235, 238, 241, 244, 300, 501, 556, 692
BlsI	GCNGC	9 cut(s)	192, 236, 239, 242, 245, 301, 502, 557, 693
Bme1390I	CCNGG	1 cut(s)	441
Bme18I	GGWCC	1 cut(s)	617
BmeRI	GACNNNNNGTC	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	617
BmiI	GGNNCC	2 cut(s)	445, 590
BmrFI	CCNGG	1 cut(s)	441
BmrI	ACTGGG	1 cut(s)	32
BmsI	GCATC	7 cut(s)	397, 419, 487, 512, 699, 871, 926
BmuI	ACTGGG	1 cut(s)	32
BpiI	GAAGAC	1 cut(s)	322
BpuMI	CCSGG	1 cut(s)	441
BsaHI	GRCGYC	1 cut(s)	835
BsaJI	CCNNGG	3 cut(s)	155, 414, 629
BsaWI	WCCGGW	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	2 cut(s)	351, 459
Bse1I	ACTGG	3 cut(s)	27, 447, 552
Bse21I	CCTNAGG	1 cut(s)	162
Bse3DI	GCAATG	3 cut(s)	288, 623, 756
BseDI	CCNNGG	3 cut(s)	155, 414, 629
BseGI	GGATG	2 cut(s)	219, 410
BseLI	CCNNNNNNNGG	2 cut(s)	351, 459
BseMI	GCAATG	3 cut(s)	288, 623, 756
BseMII	CTCAG	3 cut(s)	113, 176, 671
BseNI	ACTGG	3 cut(s)	27, 447, 552
BseXI	GCAGC	7 cut(s)	202, 246, 249, 252, 255, 286, 512
BsgI	GTGCAG	1 cut(s)	253
Bsh1236I	CGCG	2 cut(s)	221, 558
BshFI	GGCC	3 cut(s)	160, 463, 555
BsiSI	CCGG	5 cut(s)	184, 260, 441, 662, 838
BsiWI	CGTACG	1 cut(s)	733
BslI	CCNNNNNNNGG	2 cut(s)	351, 459
BsmAI	GTCTC	2 cut(s)	108, 279
BsnI	GGCC	3 cut(s)	160, 463, 555
Bsp143I	GATC	2 cut(s)	793, 898
BspACI	CCGC	5 cut(s)	221, 556, 575, 691, 724
BspANI	GGCC	3 cut(s)	160, 463, 555
BspCNI	CTCAG	3 cut(s)	112, 175, 670
BspFNI	CGCG	2 cut(s)	221, 558
BspHI	TCATGA	1 cut(s)	944
BspLI	GGNNCC	2 cut(s)	445, 590
BspPI	GGATC	1 cut(s)	906
BspQI	GCTCTTC	1 cut(s)	769
BsrBI	CCGCTC	1 cut(s)	726
BsrDI	GCAATG	3 cut(s)	288, 623, 756
BsrI	ACTGG	3 cut(s)	27, 447, 552
BssECI	CCNNGG	3 cut(s)	155, 414, 629
BssMI	GATC	2 cut(s)	793, 898
BssNI	GRCGYC	1 cut(s)	835
BssT1I	CCWWGG	1 cut(s)	629
Bst4CI	ACNGT	1 cut(s)	733
Bst6I	CTCTTC	1 cut(s)	769
BstACI	GRCGYC	1 cut(s)	835
BstC8I	GCNNGC	1 cut(s)	465
BstDEI	CTNAG	4 cut(s)	99, 162, 657, 797
BstDSI	CCRYGG	1 cut(s)	155
BstEII	GGTNACC	1 cut(s)	719
BstENI	CCTNNNNNAGG	1 cut(s)	457
BstF5I	GGATG	2 cut(s)	219, 410
BstFNI	CGCG	2 cut(s)	221, 558
BstKTI	GATC	2 cut(s)	796, 901
BstMAI	GTCTC	2 cut(s)	108, 279
BstMBI	GATC	2 cut(s)	793, 898
BstMWI	GCNNNNNNNGC	4 cut(s)	240, 243, 299, 305
BstNSI	RCATGY	1 cut(s)	848
BstPI	GGTNACC	1 cut(s)	719
BstSCI	CCNGG	1 cut(s)	439
BstUI	CGCG	2 cut(s)	221, 558
BstV1I	GCAGC	7 cut(s)	202, 246, 249, 252, 255, 286, 512
BstV2I	GAAGAC	1 cut(s)	322
Bsu36I	CCTNAGG	1 cut(s)	162
BsuRI	GGCC	3 cut(s)	160, 463, 555
BtgI	CCRYGG	1 cut(s)	155
BtgZI	GCGATG	1 cut(s)	339
BtsCI	GGATG	2 cut(s)	219, 410
BtsIMutI	CAGTG	2 cut(s)	20, 454
Cac8I	GCNNGC	1 cut(s)	465
CciI	TCATGA	1 cut(s)	944
Cfr13I	GGNCC	1 cut(s)	617
CseI	GACGC	2 cut(s)	227, 843
Csp6I	GTAC	2 cut(s)	682, 734
CspCI	CAANNNNNGTGG	4 cut(s)	167, 202, 335, 370
CviAII	CATG	8 cut(s)	16, 383, 536, 578, 603, 845, 862, 945
CviQI	GTAC	2 cut(s)	682, 734
DdeI	CTNAG	4 cut(s)	99, 162, 657, 797
DpnI	GATC	2 cut(s)	795, 900
DpnII	GATC	2 cut(s)	793, 898
DriI	GACNNNNNGTC	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	769
Eam1105I	GACNNNNNGTC	1 cut(s)	223
EarI	CTCTTC	1 cut(s)	769
Eco130I	CCWWGG	1 cut(s)	629
Eco147I	AGGCCT	1 cut(s)	463
Eco32I	GATATC	1 cut(s)	787
Eco47I	GGWCC	1 cut(s)	617
Eco57I	CTGAAG	1 cut(s)	324
Eco81I	CCTNAGG	1 cut(s)	162
Eco91I	GGTNACC	1 cut(s)	719
EcoNI	CCTNNNNNAGG	1 cut(s)	457
EcoO65I	GGTNACC	1 cut(s)	719
EcoRV	GATATC	1 cut(s)	787
EcoT14I	CCWWGG	1 cut(s)	629
EcoT22I	ATGCAT	1 cut(s)	412
ErhI	CCWWGG	1 cut(s)	629
FaeI	CATG	8 cut(s)	19, 386, 539, 581, 606, 848, 865, 948
FatI	CATG	8 cut(s)	15, 382, 535, 577, 602, 844, 861, 944
FauI	CCCGC	1 cut(s)	582
Fnu4HI	GCNGC	9 cut(s)	191, 235, 238, 241, 244, 300, 501, 556, 692
FokI	GGATG	2 cut(s)	226, 397
Fsp4HI	GCNGC	9 cut(s)	191, 235, 238, 241, 244, 300, 501, 556, 692
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	9 cut(s)	191, 235, 238, 241, 244, 300, 501, 556, 692
HaeIII	GGCC	3 cut(s)	160, 463, 555
HapII	CCGG	5 cut(s)	184, 260, 441, 662, 838
HgaI	GACGC	2 cut(s)	227, 843
Hin1I	GRCGYC	1 cut(s)	835
Hin1II	CATG	8 cut(s)	19, 386, 539, 581, 606, 848, 865, 948
HinfI	GANTC	1 cut(s)	434
HpaII	CCGG	5 cut(s)	184, 260, 441, 662, 838
HphI	GGTGA	3 cut(s)	104, 334, 731
Hpy166II	GTNNAC	2 cut(s)	379, 682
Hpy188I	TCNGA	3 cut(s)	424, 484, 508
Hpy188III	TCNNGA	4 cut(s)	164, 875, 902, 945
Hpy8I	GTNNAC	2 cut(s)	379, 682
HpyAV	CCTTC	3 cut(s)	46, 155, 545
HpyCH4III	ACNGT	1 cut(s)	733
HpyCH4IV	ACGT	2 cut(s)	361, 542
HpyF10VI	GCNNNNNNNGC	4 cut(s)	240, 243, 299, 305
HpyF3I	CTNAG	4 cut(s)	99, 162, 657, 797
HpySE526I	ACGT	2 cut(s)	361, 542
Hsp92I	GRCGYC	1 cut(s)	835
Hsp92II	CATG	8 cut(s)	19, 386, 539, 581, 606, 848, 865, 948
Kzo9I	GATC	2 cut(s)	793, 898
LguI	GCTCTTC	1 cut(s)	769
LmnI	GCTCC	2 cut(s)	424, 576
Lsp1109I	GCAGC	7 cut(s)	202, 246, 249, 252, 255, 286, 512
LweI	GCATC	7 cut(s)	397, 419, 487, 512, 699, 871, 926
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	2 cut(s)	361, 542
MaeIII	GTNAC	2 cut(s)	543, 719
MalI	GATC	2 cut(s)	795, 900
MbiI	CCGCTC	1 cut(s)	726
MboI	GATC	2 cut(s)	793, 898
MboII	GAAGA	3 cut(s)	278, 322, 786
MluCI	AATT	7 cut(s)	60, 131, 179, 310, 478, 517, 698
MmeI	TCCRAC	3 cut(s)	344, 402, 644
MnlI	CCTC	9 cut(s)	152, 171, 203, 256, 313, 424, 453, 502, 696
Mph1103I	ATGCAT	1 cut(s)	412
MroXI	GAANNNNTTC	1 cut(s)	35
MseI	TTAA	1 cut(s)	455
MspI	CCGG	5 cut(s)	184, 260, 441, 662, 838
MspR9I	CCNGG	1 cut(s)	441
MvnI	CGCG	2 cut(s)	221, 558
MwoI	GCNNNNNNNGC	4 cut(s)	240, 243, 299, 305
NciI	CCSGG	1 cut(s)	441
NdeII	GATC	2 cut(s)	793, 898
NlaIII	CATG	8 cut(s)	19, 386, 539, 581, 606, 848, 865, 948
NlaIV	GGNNCC	2 cut(s)	445, 590
NmuCI	GTSAC	1 cut(s)	719
NsiI	ATGCAT	1 cut(s)	412
NspI	RCATGY	1 cut(s)	848
PagI	TCATGA	1 cut(s)	944
PceI	AGGCCT	1 cut(s)	463
PciSI	GCTCTTC	1 cut(s)	769
PdmI	GAANNNNTTC	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	434
Pfl23II	CGTACG	1 cut(s)	733
PkrI	GCNGC	9 cut(s)	192, 236, 239, 242, 245, 301, 502, 557, 693
Psp1406I	AACGTT	1 cut(s)	361
PspEI	GGTNACC	1 cut(s)	719
PspLI	CGTACG	1 cut(s)	733
PspN4I	GGNNCC	2 cut(s)	445, 590
PspPI	GGNCC	1 cut(s)	617
RsaI	GTAC	2 cut(s)	683, 735
RsaNI	GTAC	2 cut(s)	682, 734
SapI	GCTCTTC	1 cut(s)	769
SaqAI	TTAA	1 cut(s)	455
SatI	GCNGC	9 cut(s)	191, 235, 238, 241, 244, 300, 501, 556, 692
Sau3AI	GATC	2 cut(s)	793, 898
Sau96I	GGNCC	1 cut(s)	617
ScrFI	CCNGG	1 cut(s)	441
SfaNI	GCATC	7 cut(s)	397, 419, 487, 512, 699, 871, 926
SinI	GGWCC	1 cut(s)	617
SpeI	ACTAGT	1 cut(s)	83
Sse9I	AATT	7 cut(s)	60, 131, 179, 310, 478, 517, 698
SseBI	AGGCCT	1 cut(s)	463
SsiI	CCGC	5 cut(s)	221, 556, 575, 691, 724
SspMI	CTAG	1 cut(s)	84
StuI	AGGCCT	1 cut(s)	463
StyD4I	CCNGG	1 cut(s)	439
StyI	CCWWGG	1 cut(s)	629
TaaI	ACNGT	1 cut(s)	733
TaiI	ACGT	2 cut(s)	364, 545
TasI	AATT	7 cut(s)	60, 131, 179, 310, 478, 517, 698
TauI	GCSGC	2 cut(s)	558, 694
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	1 cut(s)	455
Tru9I	TTAA	1 cut(s)	455
TscAI	CASTG	2 cut(s)	27, 454
TseFI	GTSAC	1 cut(s)	719
TseI	GCWGC	7 cut(s)	190, 234, 237, 240, 243, 299, 500
Tsp45I	GTSAC	1 cut(s)	719
TspDTI	ATGAA	3 cut(s)	594, 869, 933
TspGWI	ACGGA	2 cut(s)	140, 144
TspRI	CASTG	2 cut(s)	27, 454
VpaK11BI	GGWCC	1 cut(s)	617
XagI	CCTNNNNNAGG	1 cut(s)	457
XapI	RAATTY	2 cut(s)	60, 131
XceI	RCATGY	1 cut(s)	848
XcmI	CCANNNNNNNNNTGG	1 cut(s)	892
XmnI	GAANNNNTTC	1 cut(s)	35
XspI	CTAG	1 cut(s)	84
Zsp2I	ATGCAT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.