pycom17g21210

Topless-related protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Forward (+)
19684279 .. 19684862
584 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 435 bp
ATGGCCGGTCTTGAGGAATTATATGTCCAAGCCGTGGATACTGTAGTAAAGGATTTAAAGTTTTTTGCTGCATTCGATGAACTTTTGGAGGAAATCGCTCAGCTCTCAACATTGGAGAACTTTAGGTATGAGAATTCCATTATAAGAATAGTCTCTGTAGAAAACAGTTGTAGCAAATGTACTAAAAATGGTCTCTTGCATTATAGGGGGAGAATGAACAACTATCCAAGTGTGGAGATTCAAAGTCTGGCAGGGCAATCATGTCGTGATAAATTGCAGTTCCCAAACCTAAAGCGTTCGAGTTATATACGATTAGATGTGCACTTCATCGTAACTTGTGGATGTTGCAAATACTGGTCTTGCTTTAATTTTTCCACATATGGAATGAGTGCTTTTGTCTTCCGTTGCACTCAAATGACAATTTCATCAAGTTGA

Protein Analysis

145

Amino Acids

16.51

Weight (kDa)

7.52

Isoelectric Point (pI)

41.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 143
AccB7I CCANNNNNTGG 1 cut(s) 34
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 133
AfaI GTAC 1 cut(s) 181
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 1 cut(s) 242
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 2 cut(s) 157, 197
Alw44I GTGCAC 1 cut(s) 320
AoxI GGCC 1 cut(s) 3
ApaLI GTGCAC 1 cut(s) 320
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 133
BaeGI GKGCMC 1 cut(s) 324
BaeI ACNNNNGTAYC 2 cut(s) 30, 63
BbsI GAAGAC 1 cut(s) 391
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 1 cut(s) 55
BceAI ACGGC 1 cut(s) 17
BcgI CGANNNNNNTGC 2 cut(s) 245, 279
BciVI GTATCC 1 cut(s) 31
BcoDI GTCTC 2 cut(s) 157, 197
BfmI CTRYAG 2 cut(s) 42, 156
BfuI GTATCC 1 cut(s) 31
BisI GCNGC 1 cut(s) 69
BlpI GCTNAGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 70
BpiI GAAGAC 1 cut(s) 391
Bpu1102I GCTNAGC 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 32
BsaI GGTCTC 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 359
BseDI CCNNGG 1 cut(s) 33
BseGI GGATG 1 cut(s) 347
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 1 cut(s) 359
BseSI GKGCMC 1 cut(s) 324
BseXI GCAGC 1 cut(s) 55
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 324
BsiSI CCGG 1 cut(s) 6
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 2 cut(s) 157, 197
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 324
Bsp1720I GCTNAGC 1 cut(s) 99
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 112
BspTNI GGTCTC 1 cut(s) 197
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 1 cut(s) 359
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 1 cut(s) 33
Bst4CI ACNGT 2 cut(s) 43, 167
BstDEI CTNAG 1 cut(s) 99
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 1 cut(s) 347
BstMAI GTCTC 2 cut(s) 157, 197
BstSFI CTRYAG 2 cut(s) 42, 156
BstSLI GKGCMC 1 cut(s) 324
BstV1I GCAGC 1 cut(s) 55
BstV2I GAAGAC 1 cut(s) 391
BsuI GTATCC 1 cut(s) 31
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 1 cut(s) 347
Cfr10I RCCGGY 1 cut(s) 5
Csp6I GTAC 1 cut(s) 180
CviAII CATG 1 cut(s) 261
CviJI RGCY 3 cut(s) 5, 32, 103
CviKI_1 RGCY 3 cut(s) 5, 32, 103
CviQI GTAC 1 cut(s) 180
DdeI CTNAG 1 cut(s) 99
DraI TTTAAA 1 cut(s) 57
EaeI YGGCCR 1 cut(s) 3
Eco31I GGTCTC 1 cut(s) 197
EcoRI GAATTC 1 cut(s) 133
FaeI CATG 1 cut(s) 264
FatI CATG 1 cut(s) 260
FauNDI CATATG 1 cut(s) 379
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 1 cut(s) 354
Fsp4HI GCNGC 1 cut(s) 69
GluI GCNGC 1 cut(s) 69
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 6
Hin1II CATG 1 cut(s) 264
HinfI GANTC 1 cut(s) 238
HpaII CCGG 1 cut(s) 6
Hpy166II GTNNAC 1 cut(s) 322
Hpy188III TCNNGA 2 cut(s) 11, 266
Hpy8I GTNNAC 1 cut(s) 322
HpyCH4III ACNGT 2 cut(s) 43, 167
HpyCH4V TGCA 6 cut(s) 71, 199, 277, 322, 348, 408
HpyF3I CTNAG 1 cut(s) 99
Hsp92II CATG 1 cut(s) 264
LpnPI CCDG 4 cut(s) 19, 233, 237, 340
Lsp1109I GCAGC 1 cut(s) 55
MaeIII GTNAC 1 cut(s) 331
MboII GAAGA 1 cut(s) 391
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 5 cut(s) 17, 133, 272, 367, 420
MnlI CCTC 2 cut(s) 7, 82
MseI TTAA 2 cut(s) 56, 366
MslI CAYNNNNRTG 1 cut(s) 413
MspI CCGG 1 cut(s) 6
Mva1269I GAATGC 1 cut(s) 71
NdeI CATATG 1 cut(s) 379
NlaIII CATG 1 cut(s) 264
PctI GAATGC 1 cut(s) 71
PfeI GAWTC 1 cut(s) 238
PflMI CCANNNNNTGG 1 cut(s) 34
PkrI GCNGC 1 cut(s) 70
PsiI TTATAA 1 cut(s) 143
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
RseI CAYNNNNRTG 1 cut(s) 413
SaqAI TTAA 2 cut(s) 56, 366
SatI GCNGC 1 cut(s) 69
SduI GDGCHC 1 cut(s) 324
SetI ASST 3 cut(s) 105, 128, 291
SfcI CTRYAG 2 cut(s) 42, 156
SmiMI CAYNNNNRTG 1 cut(s) 413
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 5 cut(s) 17, 133, 272, 367, 420
TaaI ACNGT 2 cut(s) 43, 167
TaqI TCGA 2 cut(s) 75, 299
TasI AATT 5 cut(s) 17, 133, 272, 367, 420
TatI WGTACW 1 cut(s) 179
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 2 cut(s) 56, 366
Tru9I TTAA 2 cut(s) 56, 366
TseI GCWGC 1 cut(s) 68
TspDTI ATGAA 4 cut(s) 93, 230, 316, 414
TspGWI ACGGA 1 cut(s) 392
Van91I CCANNNNNTGG 1 cut(s) 34
VneI GTGCAC 1 cut(s) 320
XapI RAATTY 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.