Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

20021734 .. 20022498

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGAATGCATTTCAAGGAGTGTGGGAAATCTGACTGAAACTGAGCAGCAGTGTGTTAGTTATCATATTTTCTCTCATATGATTGGTAAAAGATTGATTTTGGTAGACCTGGAGTTACATCATAGGAAAACATGTAGATGTATTCATATGCTCACTTTTGGTGGTGAAGGGGTAATAGTATCCAAGCCAAATCTAAGAGTTGCTGGTTCTAGTGTTTATGCATGGTTGTATGATTATGGACACCTCCGCAAGGTCTGCCATAAGCAGAAAGCAATTTTGTTGGGTGATATGGCACACATCAGTGTATTGGTTACTGCTAGTGTTATTTCATCTCATTCTGAGTATGCAGATATGGTTAAAACCACAACCCATAAGTCACCTAGTAATTTCTCAAAACTTGTAGAAAGCTTGTTCGAGAAGGGCTATAATATTGTTTCTAGTGGAACAGAGAACCATTTAGTGTTGGTGAATTTAAGAGACAAGGGCATTGATGGCTCAAGAGCTGAAAAAGTTTTGGAATCAGTCCATATTGCAGCAATTAAAAATAATGTTCCTAGGTATGTGTTCGCCGTGGTCCCTATTAGTGTCATGTCCATCGAGTCACCCTTCTCATTTGAGACTATCGTCGGATTGAAGATTGATAAAAGACATATCTTCTCTCAATTTGCTACAAACCCTGAGAAATTGTTTGTTGAATTTAAGAATGCTGGAGTTCTGATCGATCATCAGAAGATTTCAAGGATGTTTAAAGTAGTGGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0005937 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006544 GO:0006563 GO:0006725 GO:0006730 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009059 GO:0009069 GO:0009070 GO:0009328 GO:0009987 GO:0010467 GO:0016020 GO:0016053 GO:0016070 GO:0016740 GO:0016741 GO:0016742 GO:0017144 GO:0019538 GO:0019752 GO:0030427 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042133 GO:0042995 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043332 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0046394 GO:0046483 GO:0051286 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0090304 GO:0120025 GO:0120038 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00260 ko00460 ko00630 ko00670 ko00680 ko00970 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko01523 ko03010 map00260 map00460 map00630 map00670 map00680 map00970 map01100 map01110 map01120 map01130 map01200 map01230 map01523 map03010

Pfam Domains

Protein Families

B3_4 B5 SHMT tRNA-synt_2d

Protein Analysis

255

Amino Acids

28.53

Weight (kDa)

8.88

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SHMT	PF00464	61 - 126	6.1e-20	Serine hydroxymethyltransferase
SHMT	PF00464	128 - 193	9.7e-18	Serine hydroxymethyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	105
AciI	CCGC	1 cut(s)	247
AcsI	RAATTY	2 cut(s)	469, 695
AfiI	CCNNNNNNNGG	1 cut(s)	250
AflIII	ACRYGT	1 cut(s)	131
AgsI	TTSAA	4 cut(s)	15, 634, 695, 738
AjnI	CCWGG	1 cut(s)	108
AleI	CACNNNNGTG	1 cut(s)	300
AluBI	AGCT	2 cut(s)	408, 503
AluI	AGCT	2 cut(s)	408, 503
Alw26I	GTCTC	2 cut(s)	471, 611
ApeKI	GCWGC	2 cut(s)	46, 533
ApoI	RAATTY	2 cut(s)	469, 695
AspA2I	CCTAGG	1 cut(s)	554
AspS9I	GGNCC	1 cut(s)	574
AsuHPI	GGTGA	5 cut(s)	176, 296, 369, 478, 594
AvaII	GGWCC	1 cut(s)	574
AvrII	CCTAGG	1 cut(s)	554
BbvI	GCAGC	2 cut(s)	58, 545
BccI	CCATC	2 cut(s)	485, 602
BceAI	ACGGC	1 cut(s)	554
BciT130I	CCWGG	1 cut(s)	110
BciVI	GTATCC	1 cut(s)	190
BcoDI	GTCTC	2 cut(s)	471, 611
BfaI	CTAG	5 cut(s)	210, 318, 381, 438, 555
BfuI	GTATCC	1 cut(s)	190
BisI	GCNGC	2 cut(s)	47, 534
BlnI	CCTAGG	1 cut(s)	554
BlsI	GCNGC	2 cut(s)	48, 535
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	1 cut(s)	574
BmgT120I	GGNCC	1 cut(s)	574
BmiI	GGNNCC	1 cut(s)	576
BmrFI	CCNGG	1 cut(s)	110
BoxI	GACNNNNGTC	1 cut(s)	623
BpmI	CTGGAG	2 cut(s)	131, 729
BpuEI	CTTGAG	1 cut(s)	481
Bsa29I	ATCGAT	1 cut(s)	720
BsaJI	CCNNGG	2 cut(s)	554, 570
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
BseBI	CCWGG	1 cut(s)	110
BseCI	ATCGAT	1 cut(s)	720
BseDI	CCNNGG	2 cut(s)	554, 570
BseGI	GGATG	1 cut(s)	747
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMII	CTCAG	3 cut(s)	33, 330, 669
BseXI	GCAGC	2 cut(s)	58, 545
BshVI	ATCGAT	1 cut(s)	720
BslFI	GGGAC	1 cut(s)	560
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmAI	GTCTC	2 cut(s)	471, 611
BsmFI	GGGAC	1 cut(s)	560
BsmI	GAATGC	2 cut(s)	11, 709
Bsp143I	GATC	2 cut(s)	717, 721
BspACI	CCGC	1 cut(s)	247
BspCNI	CTCAG	3 cut(s)	34, 331, 670
BspDI	ATCGAT	1 cut(s)	720
BspLI	GGNNCC	1 cut(s)	576
BssECI	CCNNGG	2 cut(s)	554, 570
BssMI	GATC	2 cut(s)	717, 721
BssT1I	CCWWGG	1 cut(s)	554
Bst2UI	CCWGG	1 cut(s)	110
BstAPI	GCANNNNNTGC	1 cut(s)	255
BstDEI	CTNAG	4 cut(s)	42, 194, 339, 678
BstDSI	CCRYGG	1 cut(s)	570
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstF5I	GGATG	1 cut(s)	747
BstKTI	GATC	2 cut(s)	720, 724
BstMAI	GTCTC	2 cut(s)	471, 611
BstMBI	GATC	2 cut(s)	717, 721
BstMWI	GCNNNNNNNGC	2 cut(s)	255, 492
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	135
BstPAI	GACNNNNGTC	1 cut(s)	623
BstSCI	CCNGG	1 cut(s)	108
BstV1I	GCAGC	2 cut(s)	58, 545
Bsu15I	ATCGAT	1 cut(s)	720
BsuI	GTATCC	1 cut(s)	190
BsuTUI	ATCGAT	1 cut(s)	720
BtgI	CCRYGG	1 cut(s)	570
BtsCI	GGATG	1 cut(s)	747
BtsI	GCAGTG	1 cut(s)	56
BtsIMutI	CAGTG	2 cut(s)	56, 307
Cfr13I	GGNCC	1 cut(s)	574
ClaI	ATCGAT	1 cut(s)	720
CspCI	CAANNNNNGTGG	1 cut(s)	38
CviAII	CATG	3 cut(s)	132, 222, 589
CviJI	RGCY	5 cut(s)	187, 408, 423, 495, 503
CviKI_1	RGCY	5 cut(s)	187, 408, 423, 495, 503
DdeI	CTNAG	4 cut(s)	42, 194, 339, 678
DpnI	GATC	2 cut(s)	719, 723
DpnII	GATC	2 cut(s)	717, 721
DraI	TTTAAA	1 cut(s)	748
Eco130I	CCWWGG	1 cut(s)	554
Eco47I	GGWCC	1 cut(s)	574
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	554
EcoT22I	ATGCAT	2 cut(s)	11, 223
ErhI	CCWWGG	1 cut(s)	554
FaeI	CATG	3 cut(s)	135, 225, 592
FaqI	GGGAC	1 cut(s)	560
FatI	CATG	3 cut(s)	131, 221, 588
FauNDI	CATATG	2 cut(s)	78, 147
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	2 cut(s)	47, 534
FokI	GGATG	1 cut(s)	754
Fsp4HI	GCNGC	2 cut(s)	47, 534
FspBI	CTAG	5 cut(s)	210, 318, 381, 438, 555
GluI	GCNGC	2 cut(s)	47, 534
GsuI	CTGGAG	2 cut(s)	131, 729
Hin1II	CATG	3 cut(s)	135, 225, 592
HindIII	AAGCTT	1 cut(s)	406
HinfI	GANTC	2 cut(s)	518, 599
HphI	GGTGA	5 cut(s)	176, 296, 369, 478, 594
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	5 cut(s)	33, 340, 629, 717, 729
Hpy188III	TCNNGA	2 cut(s)	415, 498
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	1 cut(s)	629
HpyAV	CCTTC	3 cut(s)	161, 412, 616
HpyCH4V	TGCA	4 cut(s)	9, 221, 347, 533
HpyF10VI	GCNNNNNNNGC	2 cut(s)	255, 492
HpyF3I	CTNAG	4 cut(s)	42, 194, 339, 678
Hsp92II	CATG	3 cut(s)	135, 225, 592
Kzo9I	GATC	2 cut(s)	717, 721
LpnPI	CCDG	5 cut(s)	95, 122, 189, 690, 693
Lsp1109I	GCAGC	2 cut(s)	58, 545
MaeI	CTAG	5 cut(s)	210, 318, 381, 438, 555
MaeIII	GTNAC	4 cut(s)	114, 310, 375, 600
MalI	GATC	2 cut(s)	719, 723
MboI	GATC	2 cut(s)	717, 721
MboII	GAAGA	3 cut(s)	646, 646, 742
MluCI	AATT	7 cut(s)	273, 385, 469, 537, 662, 683, 695
MlyI	GAGTC	1 cut(s)	608
MmeI	TCCRAC	1 cut(s)	607
MnlI	CCTC	1 cut(s)	254
Mph1103I	ATGCAT	2 cut(s)	11, 223
MseI	TTAA	5 cut(s)	357, 473, 540, 699, 747
MslI	CAYNNNNRTG	2 cut(s)	136, 300
MspR9I	CCNGG	1 cut(s)	110
Mva1269I	GAATGC	2 cut(s)	11, 709
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	2 cut(s)	255, 492
NdeI	CATATG	2 cut(s)	78, 147
NdeII	GATC	2 cut(s)	717, 721
NlaIII	CATG	3 cut(s)	135, 225, 592
NlaIV	GGNNCC	1 cut(s)	576
NmuCI	GTSAC	2 cut(s)	375, 600
NsiI	ATGCAT	2 cut(s)	11, 223
NspI	RCATGY	1 cut(s)	135
OliI	CACNNNNGTG	1 cut(s)	300
PciI	ACATGT	1 cut(s)	131
PctI	GAATGC	2 cut(s)	11, 709
PfeI	GAWTC	1 cut(s)	518
PkrI	GCNGC	2 cut(s)	48, 535
PleI	GAGTC	1 cut(s)	607
PpsI	GAGTC	1 cut(s)	607
PscI	ACATGT	1 cut(s)	131
PshAI	GACNNNNGTC	1 cut(s)	623
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	576
PspPI	GGNCC	1 cut(s)	574
RseI	CAYNNNNRTG	2 cut(s)	136, 300
SaqAI	TTAA	5 cut(s)	357, 473, 540, 699, 747
SatI	GCNGC	2 cut(s)	47, 534
Sau3AI	GATC	2 cut(s)	717, 721
Sau96I	GGNCC	1 cut(s)	574
SchI	GAGTC	1 cut(s)	608
ScrFI	CCNGG	1 cut(s)	110
SetI	ASST	7 cut(s)	111, 246, 255, 382, 410, 505, 560
SinI	GGWCC	1 cut(s)	574
SmiMI	CAYNNNNRTG	2 cut(s)	136, 300
SmlI	CTYRAG	1 cut(s)	496
SmoI	CTYRAG	1 cut(s)	496
Sse9I	AATT	7 cut(s)	273, 385, 469, 537, 662, 683, 695
SsiI	CCGC	1 cut(s)	247
SspI	AATATT	1 cut(s)	430
SspMI	CTAG	5 cut(s)	210, 318, 381, 438, 555
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	1 cut(s)	554
TaqI	TCGA	3 cut(s)	414, 597, 720
TasI	AATT	7 cut(s)	273, 385, 469, 537, 662, 683, 695
TfiI	GAWTC	1 cut(s)	518
Tru1I	TTAA	5 cut(s)	357, 473, 540, 699, 747
Tru9I	TTAA	5 cut(s)	357, 473, 540, 699, 747
TscAI	CASTG	2 cut(s)	56, 307
TseFI	GTSAC	2 cut(s)	375, 600
TseI	GCWGC	2 cut(s)	46, 533
Tsp45I	GTSAC	2 cut(s)	375, 600
TspDTI	ATGAA	2 cut(s)	134, 318
TspRI	CASTG	2 cut(s)	56, 307
VpaK11BI	GGWCC	1 cut(s)	574
XagI	CCTNNNNNAGG	1 cut(s)	248
XapI	RAATTY	2 cut(s)	469, 695
XceI	RCATGY	1 cut(s)	135
XmaJI	CCTAGG	1 cut(s)	554
XmiI	GTMKAC	1 cut(s)	105
XspI	CTAG	5 cut(s)	210, 318, 381, 438, 555
Zsp2I	ATGCAT	2 cut(s)	11, 223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.