Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

21297371 .. 21297739

Gene Structure 369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCAGACAACTTCTTTGACCTGGGTTTGCTCAAGAAAGCACTCGGGAAGACCCTCGTGCCCTGCTACCTATTGGCAGGCCGCTTCAAGCTCAACAGCGAGAATGGTCGGATGGAGGTTGGTTGCAACGCGAAGGGAGTGCTCTTTGTTGTGGCAGAGAGCAGGCTTCAAGCTCAATGGCGAGAATGGTCGTATCGAGGTTGATTGCAACGCGGAGGGAATGCTCTTTCTTGTGGCAGAGAGCAGCTCCGTCCTGGATGATTTTGGCGATTTTACGCCCACTCCTGACTTCCTAAAGCTCATTCGTACCGATCGATTACTCTGCTGGGATATCCTCATATTCTATTTTGGTATTACAGGTATATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

123

Amino Acids

13.82

Weight (kDa)

7.62

Isoelectric Point (pI)

32.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	61 - 105	1.6e-06	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	130, 212
AciI	CCGC	2 cut(s)	81, 212
AfaI	GTAC	1 cut(s)	307
AgsI	TTSAA	2 cut(s)	87, 169
AjnI	CCWGG	2 cut(s)	20, 252
AluBI	AGCT	4 cut(s)	90, 172, 246, 298
AluI	AGCT	4 cut(s)	90, 172, 246, 298
Alw21I	GWGCWC	1 cut(s)	143
Ama87I	CYCGRG	1 cut(s)	43
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	1 cut(s)	243
ArsI	GACNNNNNNTTYG	1 cut(s)	30
AvaI	CYCGRG	1 cut(s)	43
BaeGI	GKGCMC	1 cut(s)	62
BauI	CACGAG	1 cut(s)	55
BbsI	GAAGAC	1 cut(s)	55
Bbv12I	GWGCWC	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	255
BccI	CCATC	1 cut(s)	105
BcgI	CGANNNNNNTGC	4 cut(s)	120, 154, 303, 337
BciT130I	CCWGG	2 cut(s)	22, 254
BisI	GCNGC	2 cut(s)	81, 244
BlsI	GCNGC	2 cut(s)	82, 245
Bme1390I	CCNGG	2 cut(s)	22, 254
BmeT110I	CYCGRG	1 cut(s)	43
BmrFI	CCNGG	2 cut(s)	22, 254
BpiI	GAAGAC	1 cut(s)	55
BplI	GAGNNNNNCTC	2 cut(s)	230, 262
BpuEI	CTTGAG	1 cut(s)	16
Bsa29I	ATCGAT	1 cut(s)	313
BsaJI	CCNNGG	1 cut(s)	21
BsaXI	ACNNNNNCTCC	2 cut(s)	265, 295
BseBI	CCWGG	2 cut(s)	22, 254
BseCI	ATCGAT	1 cut(s)	313
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	2 cut(s)	116, 262
BseSI	GKGCMC	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	255
BseYI	CCCAGC	1 cut(s)	324
Bsh1236I	CGCG	2 cut(s)	130, 212
Bsh1285I	CGRYCG	1 cut(s)	313
BshFI	GGCC	1 cut(s)	80
BshVI	ATCGAT	1 cut(s)	313
BsiEI	CGRYCG	1 cut(s)	313
BsiHKAI	GWGCWC	1 cut(s)	143
BsiHKCI	CYCGRG	1 cut(s)	43
BsmI	GAATGC	1 cut(s)	225
BsnI	GGCC	1 cut(s)	80
BsoBI	CYCGRG	1 cut(s)	43
Bsp1286I	GDGCHC	2 cut(s)	62, 143
Bsp143I	GATC	1 cut(s)	310
BspACI	CCGC	2 cut(s)	81, 212
BspANI	GGCC	1 cut(s)	80
BspDI	ATCGAT	1 cut(s)	313
BspFNI	CGCG	2 cut(s)	130, 212
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	1 cut(s)	310
BssSI	CACGAG	1 cut(s)	55
Bst2BI	CACGAG	1 cut(s)	55
Bst2UI	CCWGG	2 cut(s)	22, 254
BstC8I	GCNNGC	2 cut(s)	78, 163
BstF5I	GGATG	2 cut(s)	116, 262
BstFNI	CGCG	2 cut(s)	130, 212
BstKTI	GATC	1 cut(s)	313
BstMBI	GATC	1 cut(s)	310
BstMCI	CGRYCG	1 cut(s)	313
BstNI	CCWGG	2 cut(s)	22, 254
BstSCI	CCNGG	2 cut(s)	20, 252
BstSLI	GKGCMC	1 cut(s)	62
BstUI	CGCG	2 cut(s)	130, 212
BstV1I	GCAGC	1 cut(s)	255
BstV2I	GAAGAC	1 cut(s)	55
Bsu15I	ATCGAT	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	80
BsuTUI	ATCGAT	1 cut(s)	313
BtsCI	GGATG	2 cut(s)	116, 262
Cac8I	GCNNGC	2 cut(s)	78, 163
ClaI	ATCGAT	1 cut(s)	313
Csp6I	GTAC	1 cut(s)	306
CviJI	RGCY	6 cut(s)	80, 90, 165, 172, 246, 298
CviKI_1	RGCY	6 cut(s)	80, 90, 165, 172, 246, 298
CviQI	GTAC	1 cut(s)	306
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
Eco32I	GATATC	1 cut(s)	331
Eco88I	CYCGRG	1 cut(s)	43
EcoRII	CCWGG	2 cut(s)	20, 252
EcoRV	GATATC	1 cut(s)	331
FaiI	YATR	3 cut(s)	338, 362, 364
Fnu4HI	GCNGC	2 cut(s)	81, 244
FokI	GGATG	2 cut(s)	123, 269
Fsp4HI	GCNGC	2 cut(s)	81, 244
GluI	GCNGC	2 cut(s)	81, 244
GsaI	CCCAGC	1 cut(s)	328
HaeIII	GGCC	1 cut(s)	80
Hpy188I	TCNGA	1 cut(s)	110
Hpy188III	TCNNGA	3 cut(s)	33, 45, 284
HpyAV	CCTTC	1 cut(s)	126
HpyCH4V	TGCA	3 cut(s)	4, 125, 207
Kzo9I	GATC	1 cut(s)	310
LmnI	GCTCC	1 cut(s)	251
Lsp1109I	GCAGC	1 cut(s)	255
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	1 cut(s)	60
MhlI	GDGCHC	2 cut(s)	62, 143
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	5 cut(s)	64, 108, 190, 208, 344
MseI	TTAA	1 cut(s)	367
MspR9I	CCNGG	2 cut(s)	22, 254
Mva1269I	GAATGC	1 cut(s)	225
MvaI	CCWGG	2 cut(s)	22, 254
MvnI	CGCG	2 cut(s)	130, 212
NdeII	GATC	1 cut(s)	310
PcsI	WCGNNNNNNNCGW	1 cut(s)	310
PctI	GAATGC	1 cut(s)	225
PfoI	TCCNGGA	1 cut(s)	252
PkrI	GCNGC	2 cut(s)	82, 245
Ple19I	CGATCG	1 cut(s)	313
Psp6I	CCWGG	2 cut(s)	20, 252
PspFI	CCCAGC	1 cut(s)	324
PspGI	CCWGG	2 cut(s)	20, 252
PvuI	CGATCG	1 cut(s)	313
RsaI	GTAC	1 cut(s)	307
RsaNI	GTAC	1 cut(s)	306
SaqAI	TTAA	1 cut(s)	367
SatI	GCNGC	2 cut(s)	81, 244
Sau3AI	GATC	1 cut(s)	310
ScrFI	CCNGG	2 cut(s)	22, 254
SduI	GDGCHC	2 cut(s)	62, 143
SetI	ASST	9 cut(s)	23, 71, 92, 119, 174, 201, 248, 300, 361
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
SsiI	CCGC	2 cut(s)	81, 212
StyD4I	CCNGG	2 cut(s)	20, 252
TaqI	TCGA	2 cut(s)	195, 313
TauI	GCSGC	1 cut(s)	83
Tru1I	TTAA	1 cut(s)	367
Tru9I	TTAA	1 cut(s)	367
TseI	GCWGC	1 cut(s)	243
TspGWI	ACGGA	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.