pycom17g23450

modification-dependent protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Reverse (-)
21824710 .. 21824961
252 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 252 bp
ATGTCATCGTCGTCAAAGAAGATCACCCTCAAGAGCTCGGACGGTGAGTCGTTCGAGGTTGAGGAGGTGATGGTGCTGGAGTCGCATACCATCAAGCACATGATTGAGGACGATTGCACTAACAACGGCATGTCGACGCCACGAAGCCCGACGAGAAGATCTCCGAGGACGATCTCAAGGCCTGGGATTAGAATTTGGTTTGATTCTAGGGTTTCAAAATTTGGGGATTCAGTTGGTTTAAGGTTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

84

Amino Acids

9.41

Weight (kDa)

9.03

Isoelectric Point (pI)

80.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 6 - 43 4.7e-14 Skp1 family, tetramerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 134
AcsI RAATTY 2 cut(s) 192, 218
AcyI GRCGYC 1 cut(s) 137
AgsI TTSAA 1 cut(s) 216
AhdI GACNNNNNGTC 1 cut(s) 46
AjnI CCWGG 1 cut(s) 181
AluBI AGCT 1 cut(s) 36
AluI AGCT 1 cut(s) 36
Alw21I GWGCWC 1 cut(s) 38
AoxI GGCC 1 cut(s) 179
ApoI RAATTY 2 cut(s) 192, 218
AsuHPI GGTGA 3 cut(s) 16, 56, 79
BanII GRGCYC 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 38
BccI CCATC 2 cut(s) 64, 98
BceAI ACGGC 1 cut(s) 142
BciT130I CCWGG 1 cut(s) 183
BfaI CTAG 1 cut(s) 207
BglII AGATCT 1 cut(s) 158
Bme1390I CCNGG 1 cut(s) 183
BmeRI GACNNNNNGTC 1 cut(s) 46
BmrFI CCNGG 1 cut(s) 183
BplI GAGNNNNNCTC 2 cut(s) 145, 177
BpmI CTGGAG 1 cut(s) 98
BpuEI CTTGAG 2 cut(s) 14, 160
BsaHI GRCGYC 1 cut(s) 137
BsaJI CCNNGG 2 cut(s) 164, 182
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 2 cut(s) 164, 182
BseRI GAGGAG 1 cut(s) 77
BshFI GGCC 1 cut(s) 181
BsiHKAI GWGCWC 1 cut(s) 38
BsnI GGCC 1 cut(s) 181
Bsp1286I GDGCHC 1 cut(s) 38
Bsp143I GATC 3 cut(s) 21, 158, 171
BspANI GGCC 1 cut(s) 181
BssECI CCNNGG 2 cut(s) 164, 182
BssMI GATC 3 cut(s) 21, 158, 171
BssNI GRCGYC 1 cut(s) 137
Bst2UI CCWGG 1 cut(s) 183
Bst4CI ACNGT 1 cut(s) 44
BstACI GRCGYC 1 cut(s) 137
BstKTI GATC 3 cut(s) 24, 161, 174
BstMBI GATC 3 cut(s) 21, 158, 171
BstMWI GCNNNNNNNGC 1 cut(s) 82
BstNI CCWGG 1 cut(s) 183
BstNSI RCATGY 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 181
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
BsuRI GGCC 1 cut(s) 181
CseI GACGC 1 cut(s) 145
CviAII CATG 2 cut(s) 100, 130
CviJI RGCY 3 cut(s) 36, 147, 181
CviKI_1 RGCY 3 cut(s) 36, 147, 181
DpnI GATC 3 cut(s) 23, 160, 173
DpnII GATC 3 cut(s) 21, 158, 171
DriI GACNNNNNGTC 1 cut(s) 46
Eam1105I GACNNNNNGTC 1 cut(s) 46
Ecl136II GAGCTC 1 cut(s) 36
Eco147I AGGCCT 1 cut(s) 181
Eco24I GRGCYC 1 cut(s) 38
Eco53kI GAGCTC 1 cut(s) 36
EcoICRI GAGCTC 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 181
EcoT38I GRGCYC 1 cut(s) 38
FaeI CATG 2 cut(s) 103, 133
FaiI YATR 3 cut(s) 87, 101, 131
FatI CATG 2 cut(s) 99, 129
FblI GTMKAC 1 cut(s) 134
FriOI GRGCYC 1 cut(s) 38
FspBI CTAG 1 cut(s) 207
GsuI CTGGAG 1 cut(s) 98
HaeIII GGCC 1 cut(s) 181
HgaI GACGC 1 cut(s) 145
Hin1I GRCGYC 1 cut(s) 137
Hin1II CATG 2 cut(s) 103, 133
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HinfI GANTC 4 cut(s) 47, 80, 203, 227
HphI GGTGA 3 cut(s) 16, 56, 79
Hpy166II GTNNAC 1 cut(s) 135
Hpy188I TCNGA 2 cut(s) 40, 165
Hpy188III TCNNGA 1 cut(s) 31
Hpy8I GTNNAC 1 cut(s) 135
Hpy99I CGWCG 3 cut(s) 13, 139, 154
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4V TGCA 1 cut(s) 117
HpyF10VI GCNNNNNNNGC 1 cut(s) 82
Hsp92I GRCGYC 1 cut(s) 137
Hsp92II CATG 2 cut(s) 103, 133
Kzo9I GATC 3 cut(s) 21, 158, 171
LpnPI CCDG 3 cut(s) 62, 168, 195
MaeI CTAG 1 cut(s) 207
MalI GATC 3 cut(s) 23, 160, 173
MboI GATC 3 cut(s) 21, 158, 171
MboII GAAGA 2 cut(s) 31, 168
MflI RGATCY 1 cut(s) 158
MhlI GDGCHC 1 cut(s) 38
MluCI AATT 2 cut(s) 192, 218
MlyI GAGTC 2 cut(s) 56, 89
MnlI CCTC 6 cut(s) 38, 49, 55, 58, 100, 159
MseI TTAA 1 cut(s) 239
MspR9I CCNGG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 183
MwoI GCNNNNNNNGC 1 cut(s) 82
NdeII GATC 3 cut(s) 21, 158, 171
NlaIII CATG 2 cut(s) 103, 133
NspI RCATGY 1 cut(s) 133
PceI AGGCCT 1 cut(s) 181
PfeI GAWTC 2 cut(s) 203, 227
PleI GAGTC 2 cut(s) 55, 88
PpsI GAGTC 2 cut(s) 55, 88
Psp124BI GAGCTC 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 181
PsuI RGATCY 1 cut(s) 158
SacI GAGCTC 1 cut(s) 38
SalI GTCGAC 1 cut(s) 133
SaqAI TTAA 1 cut(s) 239
Sau3AI GATC 3 cut(s) 21, 158, 171
SchI GAGTC 2 cut(s) 56, 89
ScrFI CCNGG 1 cut(s) 183
SduI GDGCHC 1 cut(s) 38
SetI ASST 4 cut(s) 38, 60, 69, 245
SmlI CTYRAG 2 cut(s) 29, 175
SmoI CTYRAG 2 cut(s) 29, 175
Sse9I AATT 2 cut(s) 192, 218
SseBI AGGCCT 1 cut(s) 181
SspMI CTAG 1 cut(s) 207
SstI GAGCTC 1 cut(s) 38
StuI AGGCCT 1 cut(s) 181
StyD4I CCNGG 1 cut(s) 181
TaaI ACNGT 1 cut(s) 44
TaqI TCGA 2 cut(s) 54, 134
TasI AATT 2 cut(s) 192, 218
TfiI GAWTC 2 cut(s) 203, 227
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
XapI RAATTY 2 cut(s) 192, 218
XceI RCATGY 1 cut(s) 133
XmiI GTMKAC 1 cut(s) 134
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.