Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

22225054 .. 22227427

Gene Structure 2374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCGATACTTCTCAAATTGGTCAGGAATTTGATGAGGGTTTGGCTAATTGGTTGTTATAGGAATGATGTCCTAGCTGCAAATACTGATTTTGTTACGTATGCTCAAGCTCCATCAACTCCTGGACTATTTGAAGAGCCAAACCTGTTTGCGGTTCAGGAGCCTATGGCCTGCAGTGATCACTTGGATTTTGAAGACCATAATTTATCAAATTTAGCATCCATGGGCGGCTCAGAAAATGCTGGTCGTATGTCAGGTCCGCGTTGTGGGGATGATAGTACAATGCCACAGGAGCATGAGCTGATTGAATCCATTTCTCCAGTATTAGAATGTTTAAATGGGACAGTTGGTGCATTGGATAGCCATATTTACTGGTACGGCATGTCAGCAGAACTGATTTATCTGCACACTGGAACATTTGATACAAGTACAACAAGGGTTTCCGAAAATGAGCAAAACAATGTTTCTGCGGTACCATTGAAGGATGTGGAATCCTCTCTGGAGCCAAATTTCACTAAAGAAATTGAACCCCTTCGAAGCACTGAACCTGTAATAATGAGAGATGACTCAGCAGCACAGCCTGCTGGCGTTCCTATTGAGAAGGAAAACCAGAAGGAAGAAGATCATAACCTAAGATTTCACCATACTGTTGCTCAAGAACAGGCGATCACTGACCTGGAAGAATTTAATACTTCCAAACATGAACCCTTGGGGGAGATTGCTGAAATGGAAATTGACAAAGAAAATTTTGAAGTTGATGATCTTATTGTAGAAGATATTTACAAGGTGTCAGCTGATGTTAACGTCCGGTCAAGGCTTATGGATAAAACTGATGATGAAGATGCGTTGCTACAGATGGATGCATTATGCAGGTCACCAAATAATAAGTTGGACGCCCAACCCATTGAGGTGGATGCATTGATAGTTGTTGACCGTAATGTCGAAATCAGAGCATGCCGTGCGCTGAAGATACTCGTCTTCTGGAGAACAGTGGATGGTCTTCCCGCACCAGGTATGCATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007275 GO:0008150 GO:0008152 GO:0008278 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0070601 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

342

Amino Acids

38.08

Weight (kDa)

4.44

Isoelectric Point (pI)

56.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	938
Acc36I	ACCTGC	1 cut(s)	861
Acc65I	GGTACC	1 cut(s)	472
AccB1I	GGYRCC	1 cut(s)	472
AccII	CGCG	1 cut(s)	262
AciI	CCGC	5 cut(s)	152, 228, 260, 470, 1005
AcsI	RAATTY	5 cut(s)	28, 211, 508, 683, 745
AcuI	CTGAAG	1 cut(s)	986
AcyI	GRCGYC	1 cut(s)	894
AfaI	GTAC	4 cut(s)	280, 377, 430, 474
AfiI	CCNNNNNNNGG	3 cut(s)	151, 266, 1010
AgsI	TTSAA	6 cut(s)	134, 194, 308, 481, 527, 752
AjnI	CCWGG	3 cut(s)	121, 675, 1009
AluBI	AGCT	4 cut(s)	77, 110, 301, 794
AluI	AGCT	4 cut(s)	77, 110, 301, 794
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	2 cut(s)	77, 572
ApoI	RAATTY	5 cut(s)	28, 211, 508, 683, 745
Asp700I	GAANNNNTTC	1 cut(s)	531
Asp718I	GGTACC	1 cut(s)	472
AspLEI	GCGC	1 cut(s)	964
AspS9I	GGNCC	1 cut(s)	257
AsuHPI	GGTGA	2 cut(s)	632, 867
AsuII	TTCGAA	1 cut(s)	535
AvaII	GGWCC	1 cut(s)	257
BanI	GGYRCC	1 cut(s)	472
BbsI	GAAGAC	3 cut(s)	201, 970, 992
BbvI	GCAGC	2 cut(s)	64, 584
BccI	CCATC	3 cut(s)	121, 850, 989
BceAI	ACGGC	2 cut(s)	394, 942
BciT130I	CCWGG	3 cut(s)	123, 677, 1011
BclI	TGATCA	1 cut(s)	178
BfaI	CTAG	1 cut(s)	74
BfmI	CTRYAG	2 cut(s)	172, 851
BfuAI	ACCTGC	1 cut(s)	861
BisI	GCNGC	3 cut(s)	78, 229, 573
BlsI	GCNGC	3 cut(s)	79, 230, 574
Bme1390I	CCNGG	3 cut(s)	123, 677, 1011
Bme18I	GGWCC	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	3 cut(s)	162, 474, 504
BmrFI	CCNGG	3 cut(s)	123, 677, 1011
BmsI	GCATC	4 cut(s)	227, 832, 850, 904
BpiI	GAAGAC	3 cut(s)	201, 970, 992
BpmI	CTGGAG	3 cut(s)	303, 521, 1003
Bpu14I	TTCGAA	1 cut(s)	535
BpuEI	CTTGAG	2 cut(s)	90, 639
BsaAI	YACGTR	1 cut(s)	99
BsaHI	GRCGYC	1 cut(s)	894
BsaJI	CCNNGG	2 cut(s)	222, 708
BsaWI	WCCGGW	1 cut(s)	807
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 266, 1010
Bse1I	ACTGG	3 cut(s)	320, 377, 415
BseBI	CCWGG	3 cut(s)	123, 677, 1011
BseDI	CCNNGG	2 cut(s)	222, 708
BseGI	GGATG	6 cut(s)	218, 277, 490, 865, 919, 1000
BseLI	CCNNNNNNNGG	3 cut(s)	151, 266, 1010
BseMII	CTCAG	2 cut(s)	246, 582
BseNI	ACTGG	3 cut(s)	320, 377, 415
BseXI	GCAGC	2 cut(s)	64, 584
BsgI	GTGCAG	1 cut(s)	389
Bsh1236I	CGCG	1 cut(s)	262
BshFI	GGCC	1 cut(s)	170
BshNI	GGYRCC	1 cut(s)	472
BsiSI	CCGG	1 cut(s)	808
BslFI	GGGAC	1 cut(s)	355
BslI	CCNNNNNNNGG	3 cut(s)	151, 266, 1010
BsmFI	GGGAC	1 cut(s)	355
BsnI	GGCC	1 cut(s)	170
Bsp119I	TTCGAA	1 cut(s)	535
Bsp143I	GATC	4 cut(s)	178, 622, 666, 760
Bsp19I	CCATGG	1 cut(s)	222
BspACI	CCGC	5 cut(s)	152, 228, 260, 470, 1005
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	2 cut(s)	245, 581
BspFNI	CGCG	1 cut(s)	262
BspLI	GGNNCC	3 cut(s)	162, 474, 504
BspMAI	CTGCAG	1 cut(s)	176
BspMI	ACCTGC	1 cut(s)	861
BspQI	GCTCTTC	1 cut(s)	129
BspT104I	TTCGAA	1 cut(s)	535
BspT107I	GGYRCC	1 cut(s)	472
BsrI	ACTGG	3 cut(s)	320, 377, 415
BssECI	CCNNGG	2 cut(s)	222, 708
BssMI	GATC	4 cut(s)	178, 622, 666, 760
BssNI	GRCGYC	1 cut(s)	894
BssT1I	CCWWGG	2 cut(s)	222, 708
Bst2UI	CCWGG	3 cut(s)	123, 677, 1011
Bst4CI	ACNGT	4 cut(s)	346, 649, 935, 991
Bst6I	CTCTTC	1 cut(s)	129
BstACI	GRCGYC	1 cut(s)	894
BstAPI	GCANNNNNTGC	2 cut(s)	581, 959
BstBAI	YACGTR	1 cut(s)	99
BstBI	TTCGAA	1 cut(s)	535
BstC8I	GCNNGC	5 cut(s)	172, 582, 586, 955, 1020
BstDEI	CTNAG	3 cut(s)	232, 568, 632
BstDSI	CCRYGG	1 cut(s)	222
BstEII	GGTNACC	1 cut(s)	873
BstF5I	GGATG	6 cut(s)	218, 277, 490, 865, 919, 1000
BstFNI	CGCG	1 cut(s)	262
BstHHI	GCGC	1 cut(s)	964
BstKTI	GATC	4 cut(s)	181, 625, 669, 763
BstMBI	GATC	4 cut(s)	178, 622, 666, 760
BstMWI	GCNNNNNNNGC	3 cut(s)	292, 581, 959
BstNI	CCWGG	3 cut(s)	123, 677, 1011
BstNSI	RCATGY	3 cut(s)	385, 957, 1022
BstPI	GGTNACC	1 cut(s)	873
BstSCI	CCNGG	3 cut(s)	121, 675, 1009
BstSFI	CTRYAG	2 cut(s)	172, 851
BstSNI	TACGTA	1 cut(s)	99
BstUI	CGCG	1 cut(s)	262
BstV1I	GCAGC	2 cut(s)	64, 584
BstV2I	GAAGAC	3 cut(s)	201, 970, 992
BstXI	CCANNNNNNTGG	1 cut(s)	910
BsuRI	GGCC	1 cut(s)	170
BtgI	CCRYGG	1 cut(s)	222
BtsCI	GGATG	6 cut(s)	218, 277, 490, 865, 919, 1000
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	5 cut(s)	181, 408, 540, 669, 996
BveI	ACCTGC	1 cut(s)	861
Cac8I	GCNNGC	5 cut(s)	172, 582, 586, 955, 1020
CfoI	GCGC	1 cut(s)	964
Cfr13I	GGNCC	1 cut(s)	257
CseI	GACGC	1 cut(s)	902
CsiI	ACCWGGT	1 cut(s)	1009
Csp6I	GTAC	4 cut(s)	279, 376, 429, 473
CviAII	CATG	6 cut(s)	223, 296, 382, 701, 954, 1019
CviQI	GTAC	4 cut(s)	279, 376, 429, 473
DdeI	CTNAG	3 cut(s)	232, 568, 632
DpnI	GATC	4 cut(s)	180, 624, 668, 762
DpnII	GATC	4 cut(s)	178, 622, 666, 760
DraI	TTTAAA	1 cut(s)	336
DrdI	GACNNNNNNGTC	1 cut(s)	938
DseDI	GACNNNNNNGTC	1 cut(s)	938
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Eco105I	TACGTA	1 cut(s)	99
Eco130I	CCWWGG	2 cut(s)	222, 708
Eco47I	GGWCC	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	986
Eco91I	GGTNACC	1 cut(s)	873
EcoO65I	GGTNACC	1 cut(s)	873
EcoRII	CCWGG	3 cut(s)	121, 675, 1009
EcoT14I	CCWWGG	2 cut(s)	222, 708
EcoT22I	ATGCAT	3 cut(s)	865, 919, 1020
ErhI	CCWWGG	2 cut(s)	222, 708
FaeI	CATG	6 cut(s)	226, 299, 385, 704, 957, 1022
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	6 cut(s)	222, 295, 381, 700, 953, 1018
FauI	CCCGC	1 cut(s)	1012
FbaI	TGATCA	1 cut(s)	178
Fnu4HI	GCNGC	3 cut(s)	78, 229, 573
FokI	GGATG	6 cut(s)	205, 284, 497, 872, 926, 1007
Fsp4HI	GCNGC	3 cut(s)	78, 229, 573
FspBI	CTAG	1 cut(s)	74
GlaI	GCGC	1 cut(s)	963
GluI	GCNGC	3 cut(s)	78, 229, 573
GsuI	CTGGAG	3 cut(s)	303, 521, 1003
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	1 cut(s)	808
HgaI	GACGC	1 cut(s)	902
HhaI	GCGC	1 cut(s)	964
Hin1I	GRCGYC	1 cut(s)	894
Hin1II	CATG	6 cut(s)	226, 299, 385, 704, 957, 1022
Hin6I	GCGC	1 cut(s)	962
HinP1I	GCGC	1 cut(s)	962
HincII	GTYRAC	2 cut(s)	802, 931
HindII	GTYRAC	2 cut(s)	802, 931
HinfI	GANTC	3 cut(s)	308, 491, 566
HpaI	GTTAAC	1 cut(s)	802
HpaII	CCGG	1 cut(s)	808
HphI	GGTGA	2 cut(s)	632, 867
Hpy166II	GTNNAC	2 cut(s)	802, 931
Hpy188I	TCNGA	3 cut(s)	235, 445, 950
Hpy188III	TCNNGA	5 cut(s)	25, 158, 500, 656, 982
Hpy8I	GTNNAC	2 cut(s)	802, 931
HpyAV	CCTTC	4 cut(s)	475, 542, 595, 607
HpyCH4III	ACNGT	4 cut(s)	346, 649, 935, 991
HpyCH4IV	ACGT	2 cut(s)	98, 804
HpyCH4V	TGCA	8 cut(s)	80, 174, 353, 406, 863, 870, 917, 1018
HpyF10VI	GCNNNNNNNGC	3 cut(s)	292, 581, 959
HpyF3I	CTNAG	3 cut(s)	232, 568, 632
HpySE526I	ACGT	2 cut(s)	98, 804
Hsp92I	GRCGYC	1 cut(s)	894
Hsp92II	CATG	6 cut(s)	226, 299, 385, 704, 957, 1022
HspAI	GCGC	1 cut(s)	962
KpnI	GGTACC	1 cut(s)	476
Ksp22I	TGATCA	1 cut(s)	178
KspAI	GTTAAC	1 cut(s)	802
Kzo9I	GATC	4 cut(s)	178, 622, 666, 760
LguI	GCTCTTC	1 cut(s)	129
LmnI	GCTCC	4 cut(s)	115, 160, 292, 502
Lsp1109I	GCAGC	2 cut(s)	64, 584
LweI	GCATC	4 cut(s)	227, 832, 850, 904
MabI	ACCWGGT	1 cut(s)	1009
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	2 cut(s)	98, 804
MaeIII	GTNAC	2 cut(s)	94, 873
MalI	GATC	4 cut(s)	180, 624, 668, 762
MboI	GATC	4 cut(s)	178, 622, 666, 760
MlyI	GAGTC	1 cut(s)	560
MmeI	TCCRAC	1 cut(s)	870
MnlI	CCTC	3 cut(s)	30, 505, 901
Mph1103I	ATGCAT	3 cut(s)	865, 919, 1020
MroXI	GAANNNNTTC	1 cut(s)	531
MseI	TTAA	3 cut(s)	335, 687, 801
MslI	CAYNNNNRTG	1 cut(s)	908
MspA1I	CMGCKG	1 cut(s)	794
MspI	CCGG	1 cut(s)	808
MspR9I	CCNGG	3 cut(s)	123, 677, 1011
MvaI	CCWGG	3 cut(s)	123, 677, 1011
MvnI	CGCG	1 cut(s)	262
MwoI	GCNNNNNNNGC	3 cut(s)	292, 581, 959
NcoI	CCATGG	1 cut(s)	222
NdeII	GATC	4 cut(s)	178, 622, 666, 760
NlaIII	CATG	6 cut(s)	226, 299, 385, 704, 957, 1022
NlaIV	GGNNCC	3 cut(s)	162, 474, 504
NmuCI	GTSAC	1 cut(s)	873
NsiI	ATGCAT	3 cut(s)	865, 919, 1020
NspI	RCATGY	3 cut(s)	385, 957, 1022
NspV	TTCGAA	1 cut(s)	535
PaeI	GCATGC	2 cut(s)	957, 1022
PciSI	GCTCTTC	1 cut(s)	129
PdmI	GAANNNNTTC	1 cut(s)	531
PfeI	GAWTC	2 cut(s)	308, 491
PfoI	TCCNGGA	1 cut(s)	121
PkrI	GCNGC	3 cut(s)	79, 230, 574
PleI	GAGTC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	560
Ppu21I	YACGTR	1 cut(s)	99
Psp6I	CCWGG	3 cut(s)	121, 675, 1009
PspEI	GGTNACC	1 cut(s)	873
PspGI	CCWGG	3 cut(s)	121, 675, 1009
PspN4I	GGNNCC	3 cut(s)	162, 474, 504
PspPI	GGNCC	1 cut(s)	257
PsrI	GAACNNNNNNTAC	2 cut(s)	406, 438
PstI	CTGCAG	1 cut(s)	176
PvuII	CAGCTG	1 cut(s)	794
RsaI	GTAC	4 cut(s)	280, 377, 430, 474
RsaNI	GTAC	4 cut(s)	279, 376, 429, 473
RseI	CAYNNNNRTG	1 cut(s)	908
SapI	GCTCTTC	1 cut(s)	129
SaqAI	TTAA	3 cut(s)	335, 687, 801
SatI	GCNGC	3 cut(s)	78, 229, 573
Sau3AI	GATC	4 cut(s)	178, 622, 666, 760
Sau96I	GGNCC	1 cut(s)	257
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	3 cut(s)	123, 677, 1011
SexAI	ACCWGGT	1 cut(s)	1009
SfaNI	GCATC	4 cut(s)	227, 832, 850, 904
SfcI	CTRYAG	2 cut(s)	172, 851
SfuI	TTCGAA	1 cut(s)	535
SinI	GGWCC	1 cut(s)	257
SmiMI	CAYNNNNRTG	1 cut(s)	908
SmlI	CTYRAG	2 cut(s)	105, 654
SmoI	CTYRAG	2 cut(s)	105, 654
SnaBI	TACGTA	1 cut(s)	99
SphI	GCATGC	2 cut(s)	957, 1022
SsiI	CCGC	5 cut(s)	152, 228, 260, 470, 1005
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	3 cut(s)	121, 675, 1009
StyI	CCWWGG	2 cut(s)	222, 708
TaaI	ACNGT	4 cut(s)	346, 649, 935, 991
TaiI	ACGT	2 cut(s)	101, 807
TaqI	TCGA	2 cut(s)	535, 942
TatI	WGTACW	2 cut(s)	278, 428
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	2 cut(s)	308, 491
Tru1I	TTAA	3 cut(s)	335, 687, 801
Tru9I	TTAA	3 cut(s)	335, 687, 801
TscAI	CASTG	5 cut(s)	181, 415, 547, 676, 996
TseFI	GTSAC	1 cut(s)	873
TseI	GCWGC	2 cut(s)	77, 572
Tsp45I	GTSAC	1 cut(s)	873
TspDTI	ATGAA	2 cut(s)	717, 852
TspRI	CASTG	5 cut(s)	181, 415, 547, 676, 996
VpaK11BI	GGWCC	1 cut(s)	257
XapI	RAATTY	5 cut(s)	28, 211, 508, 683, 745
XceI	RCATGY	3 cut(s)	385, 957, 1022
XmnI	GAANNNNTTC	1 cut(s)	531
XspI	CTAG	1 cut(s)	74
Zsp2I	ATGCAT	3 cut(s)	865, 919, 1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.