pycom17g25320

LisH domain and HEAT repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Reverse (-)
23445777 .. 23449993
4217 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2073 bp
ATGGAAATAGAAAGTTTAAAATCCAAAACCACAAAAGCTCATGATTTTTCAGAGACCACCAATTTTGAAAAAGAGTCTGTGCAAATGGAAGAAAAGGTCATTGTCGTCCATGAAGATAAAAGTGTAATCCCACCAGTTGATGTAGAATCGAGAGTTGTGGAAAAGGAAGAAGATCAGTCTCTGGCTGCTCAAAGTTTTCATGATAACACAGTTGAACCAAAGGAAGTTTCACATGAGGTCTCTGTCGGTGTTTTAACTGATAGTAGTACCTTGGAGAATGGTGATAGCGTCTCCAAACAAAATGATGAACCATCATTAAACAGCAGCCTACACCTAACGTCAGAGAATCTTAGTCCTGAAAATGTTTCCGAAAAAAGGGCAAGTTTCTTTTACATTTCTTTTATTGCATCAATATATATATATATATATATATATTTAATATTTGTTATGGATTCGCAGGAGCTTCTTCCCCTAATCATGTATGCGATTGAACGCCATCCAGATAGCAGCACTCGGGATTCCTTAACCCACACATTGTTTAACCTAATCAAACGCCCAGATGAGCAGCAGAGAAGAATTATAATGGATCTACATTGTTTTGGACTTGTTTCTGAATCTTTAACTGCATTTCAGGCATGTGTTAACCCTGCTAAAAACGCAGGTGAGATGAAAACAGAAACAGAATTGCTTCCCCAGTGTTGGGAACAAATAAATCATATGTACAAGGAACGCAGGCTGCTAGTTGCTCAATCATGTGGAGAGCTTGCAGAGTTTGTCTGGCCTGAGATTCGTGATTCTCTCATATTGTCCATTATTCAACAACTTATAGAAGATTCTGCAACTGTTGTCCGGGAGGCAGCTGCACATAATCTTGCATTGCCGCTTCCACTCTTCCAGACCATGGACAAATATTTCAAGGTCAGCCTCACTAATATGCTTCAGAGAATTTTGTTATTCGGTAGTGGACATGTTCAATTGCCTGCATTTGAGTGGCTACATGTGGACTGCTTTCCTGCTTTAATACAGCTCGCATGCTTGTTACCTCCAAAAGAGGACAATTTGCACAACCAAATCACCAAGGTATCTTTCTCTATCTTTGTTTCTATTGGCTGTATCAGAACTCAGCGGGATTCTTATTTAACACTCATAATGCTGCCTGTATTCTTGTTAGCTGTTGGGGAAGATATTGGCTACTATGTGTGTCCTACTCTTCTCTTGGCTGGTGTTTTGAGTGGTCCAAGTAAGCATGAACAATTGGTGGAGTATCTGAGAAAATTATTAGTTCAAGGTGTTGCAAATCAATCTACGAAGTGCAATGCTGAGATTGTTGATGCTGTTCGCTTCCTTTGGTTAGTAAACACATTTGATCACCACAGCGTGATATTTAATTTACTCTTGGAAATGGTTGTCAGCTCCAGCATAGATACGAAAATAAATGCCGCCAATCTGTTGAAAGTCATTGCTCCATATATCGATGCGAAAGTTGCATCTACACATATATTACCTGCCCTAGTTACTCTGGGCTCTGACCAAAACCTGAGAGTGAAGTATGCAAGCATAGATGCCTTTGGAGCAGTGATTGTTAATAAGATACGTGTTCAAATGGATGCTTTTCTTGAAGATGGATCTCAGGAAGCTGCCATTGCTGTGGTTCGTGCAGTGGTGGTTGCTGTACCACATACAACGGAGAGACTTAAAGATATTTCAGCAACTAGTGTTCGGGTCTTTCTTATGCCTGCGATACAGAACTTATTTAGAGACCCTGATGCGCTTGACCCTGCACACAAAGAAGCCTTTGAAATTATAATGAAGGAGAGATCTGGTGGAACTTTTGAAACTATCAGTAAGGTGATGGGGGCTGGGCTTGCATCCTTCGCGAGTAGTTTCTTTGGTGAGGGTGGTCTACTGGGAAAGAAAGAAAGTCCCGAGCCACCACCAGAGCCAGTTGAGTCCCCGAAGGCTGCACCGTCACCACCTGCAGAAGACACTAGATTAAGGCGAATCATGCGGGGAAATTTCACTGACATGCTCAGGGGCAAAGCAAAGGGACCAGAGGAAAATCAGAACCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

691

Amino Acids

76.93

Weight (kDa)

5.2

Isoelectric Point (pI)

49.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 581, 1805
AarI CACCTGC 2 cut(s) 650, 1984
Acc36I ACCTGC 3 cut(s) 650, 1513, 1984
AccB7I CCANNNNNTGG 1 cut(s) 901
AccI GTMKAC 1 cut(s) 1903
AccII CGCG 1 cut(s) 1877
AciI CCGC 4 cut(s) 881, 1126, 1440, 2008
AclWI GGATC 2 cut(s) 594, 1633
AcsI RAATTY 2 cut(s) 945, 2014
AcuI CTGAAG 1 cut(s) 923
AdeI CACNNNGTG 1 cut(s) 1378
AfaI GTAC 3 cut(s) 268, 722, 1674
AfiI CCNNNNNNNGG 4 cut(s) 375, 699, 700, 901
AflIII ACRYGT 3 cut(s) 967, 997, 1594
AhlI ACTAGT 1 cut(s) 1712
AjuI GAANNNNNNNTTGG 4 cut(s) 211, 243, 1070, 1102
AluBI AGCT 8 cut(s) 38, 463, 763, 860, 1027, 1172, 1413, 1637
AluI AGCT 8 cut(s) 38, 463, 763, 860, 1027, 1172, 1413, 1637
Alw26I GTCTC 6 cut(s) 47, 183, 244, 295, 1684, 1752
AlwI GGATC 2 cut(s) 594, 1633
AlwNI CAGNNNCTG 1 cut(s) 181
Ama87I CYCGRG 2 cut(s) 513, 1925
AoxI GGCC 1 cut(s) 779
ApoI RAATTY 2 cut(s) 945, 2014
Asp700I GAANNNNTTC 1 cut(s) 687
AspLEI GCGC 1 cut(s) 1771
AspS9I GGNCC 2 cut(s) 1235, 2048
AsuC2I CCSGG 1 cut(s) 851
AsuHPI GGTGA 7 cut(s) 293, 674, 1066, 1361, 1861, 1904, 1962
AvaI CYCGRG 2 cut(s) 513, 1925
AvaII GGWCC 2 cut(s) 1235, 2048
BaeI ACNNNNGTAYC 2 cut(s) 1065, 1098
BanII GRGCYC 1 cut(s) 1526
BbsI GAAGAC 1 cut(s) 1989
BccI CCATC 4 cut(s) 319, 504, 1616, 1846
BclI TGATCA 1 cut(s) 1366
BcnI CCSGG 1 cut(s) 851
BcoDI GTCTC 6 cut(s) 47, 183, 244, 295, 1684, 1752
BcuI ACTAGT 1 cut(s) 1712
BfaI CTAG 4 cut(s) 740, 1511, 1713, 1989
BfmI CTRYAG 1 cut(s) 1977
BfuAI ACCTGC 3 cut(s) 650, 1513, 1984
BglII AGATCT 1 cut(s) 1817
Bme1390I CCNGG 1 cut(s) 851
Bme18I GGWCC 2 cut(s) 1235, 2048
BmeT110I CYCGRG 2 cut(s) 513, 1925
BmgT120I GGNCC 2 cut(s) 1235, 2048
BmiI GGNNCC 1 cut(s) 2049
BmrFI CCNGG 1 cut(s) 851
BmrI ACTGGG 2 cut(s) 688, 1916
BmsI GCATC 8 cut(s) 416, 1321, 1465, 1496, 1552, 1597, 1756, 1877
BmuI ACTGGG 2 cut(s) 688, 1916
BpiI GAAGAC 1 cut(s) 1989
BpmI CTGGAG 1 cut(s) 1399
Bpu10I CCTNAGC 1 cut(s) 2030
BpuMI CCSGG 1 cut(s) 851
Bsa29I ATCGAT 1 cut(s) 1473
BsaAI YACGTR 1 cut(s) 1595
BsaI GGTCTC 3 cut(s) 47, 244, 1752
BsaJI CCNNGG 3 cut(s) 270, 900, 1077
Bsc4I CCNNNNNNNGG 4 cut(s) 375, 699, 700, 901
Bse1I ACTGG 4 cut(s) 134, 694, 1911, 1943
Bse3DI GCAATG 4 cut(s) 875, 1321, 1458, 1641
BseCI ATCGAT 1 cut(s) 1473
BseDI CCNNGG 3 cut(s) 270, 900, 1077
BseGI GGATG 3 cut(s) 496, 1612, 1868
BseLI CCNNNNNNNGG 4 cut(s) 375, 699, 700, 901
BseMI GCAATG 4 cut(s) 875, 1321, 1458, 1641
BseMII CTCAG 7 cut(s) 774, 1136, 1259, 1311, 1529, 1643, 2044
BseNI ACTGG 4 cut(s) 134, 694, 1911, 1943
BseYI CCCAGC 1 cut(s) 1859
BsgI GTGCAG 4 cut(s) 846, 1677, 1764, 1947
Bsh1236I CGCG 1 cut(s) 1877
BshFI GGCC 1 cut(s) 781
BshVI ATCGAT 1 cut(s) 1473
BsiHKCI CYCGRG 2 cut(s) 513, 1925
BsiSI CCGG 1 cut(s) 850
BslFI GGGAC 3 cut(s) 1908, 1936, 2061
BslI CCNNNNNNNGG 4 cut(s) 375, 699, 700, 901
BsmAI GTCTC 6 cut(s) 47, 183, 244, 295, 1684, 1752
BsmBI CGTCTC 1 cut(s) 295
BsmFI GGGAC 3 cut(s) 1908, 1936, 2061
BsnI GGCC 1 cut(s) 781
Bso31I GGTCTC 3 cut(s) 47, 244, 1752
BsoBI CYCGRG 2 cut(s) 513, 1925
Bsp1286I GDGCHC 1 cut(s) 1526
Bsp1407I TGTACA 1 cut(s) 720
Bsp143I GATC 5 cut(s) 172, 586, 1366, 1625, 1817
Bsp19I CCATGG 1 cut(s) 900
Bsp68I TCGCGA 1 cut(s) 1877
BspACI CCGC 4 cut(s) 881, 1126, 1440, 2008
BspANI GGCC 1 cut(s) 781
BspCNI CTCAG 7 cut(s) 775, 1135, 1260, 1312, 1530, 1642, 2043
BspDI ATCGAT 1 cut(s) 1473
BspFNI CGCG 1 cut(s) 1877
BspHI TCATGA 2 cut(s) 40, 199
BspLI GGNNCC 1 cut(s) 2049
BspMAI CTGCAG 1 cut(s) 1981
BspMI ACCTGC 3 cut(s) 650, 1513, 1984
BspPI GGATC 2 cut(s) 594, 1633
BspTNI GGTCTC 3 cut(s) 47, 244, 1752
BsrDI GCAATG 4 cut(s) 875, 1321, 1458, 1641
BsrGI TGTACA 1 cut(s) 720
BsrI ACTGG 4 cut(s) 134, 694, 1911, 1943
BssECI CCNNGG 3 cut(s) 270, 900, 1077
BssMI GATC 5 cut(s) 172, 586, 1366, 1625, 1817
BssT1I CCWWGG 3 cut(s) 270, 900, 1077
Bst4CI ACNGT 3 cut(s) 211, 844, 1968
Bst6I CTCTTC 2 cut(s) 896, 1215
BstAUI TGTACA 1 cut(s) 720
BstBAI YACGTR 1 cut(s) 1595
BstC8I GCNNGC 8 cut(s) 734, 765, 981, 1029, 1033, 1555, 1737, 1866
BstDEI CTNAG 8 cut(s) 350, 783, 1122, 1268, 1320, 1538, 1629, 2030
BstDSI CCRYGG 1 cut(s) 900
BstF5I GGATG 3 cut(s) 496, 1612, 1868
BstFNI CGCG 1 cut(s) 1877
BstHHI GCGC 1 cut(s) 1771
BstKTI GATC 5 cut(s) 175, 589, 1369, 1628, 1820
BstMAI GTCTC 6 cut(s) 47, 183, 244, 295, 1684, 1752
BstMBI GATC 5 cut(s) 172, 586, 1366, 1625, 1817
BstMWI GCNNNNNNNGC 8 cut(s) 632, 656, 1484, 1571, 1643, 1865, 1874, 2005
BstNSI RCATGY 5 cut(s) 639, 971, 1001, 1035, 2029
BstSCI CCNGG 1 cut(s) 849
BstSFI CTRYAG 1 cut(s) 1977
BstUI CGCG 1 cut(s) 1877
BstV2I GAAGAC 1 cut(s) 1989
BstX2I RGATCY 3 cut(s) 586, 1625, 1817
BstXI CCANNNNNNTGG 1 cut(s) 1648
BstYI RGATCY 3 cut(s) 586, 1625, 1817
Bsu15I ATCGAT 1 cut(s) 1473
BsuRI GGCC 1 cut(s) 781
BsuTUI ATCGAT 1 cut(s) 1473
BtgI CCRYGG 1 cut(s) 900
BtsCI GGATG 3 cut(s) 496, 1612, 1868
BtsI GCAGTG 2 cut(s) 1581, 1665
BtsIMutI CAGTG 4 cut(s) 701, 1581, 1665, 2019
BtuMI TCGCGA 1 cut(s) 1877
BveI ACCTGC 3 cut(s) 650, 1513, 1984
Cac8I GCNNGC 8 cut(s) 734, 765, 981, 1029, 1033, 1555, 1737, 1866
CaiI CAGNNNCTG 1 cut(s) 181
CciI TCATGA 2 cut(s) 40, 199
CfoI GCGC 1 cut(s) 1771
Cfr13I GGNCC 2 cut(s) 1235, 2048
ClaI ATCGAT 1 cut(s) 1473
CseI GACGC 1 cut(s) 277
Csp6I GTAC 3 cut(s) 267, 721, 1673
CspCI CAANNNNNGTGG 2 cut(s) 46, 81
CviQI GTAC 3 cut(s) 267, 721, 1673
DdeI CTNAG 8 cut(s) 350, 783, 1122, 1268, 1320, 1538, 1629, 2030
DpnI GATC 5 cut(s) 174, 588, 1368, 1627, 1819
DpnII GATC 5 cut(s) 172, 586, 1366, 1625, 1817
DraI TTTAAA 1 cut(s) 18
DraIII CACNNNGTG 1 cut(s) 1378
Eam1104I CTCTTC 2 cut(s) 896, 1215
EarI CTCTTC 2 cut(s) 896, 1215
Eco130I CCWWGG 3 cut(s) 270, 900, 1077
Eco24I GRGCYC 1 cut(s) 1526
Eco31I GGTCTC 3 cut(s) 47, 244, 1752
Eco47I GGWCC 2 cut(s) 1235, 2048
Eco57I CTGAAG 1 cut(s) 923
Eco88I CYCGRG 2 cut(s) 513, 1925
EcoT14I CCWWGG 3 cut(s) 270, 900, 1077
EcoT38I GRGCYC 1 cut(s) 1526
ErhI CCWWGG 3 cut(s) 270, 900, 1077
Esp3I CGTCTC 1 cut(s) 295
FaqI GGGAC 3 cut(s) 1908, 1936, 2061
FauI CCCGC 2 cut(s) 1119, 2001
FauNDI CATATG 1 cut(s) 717
FbaI TGATCA 1 cut(s) 1366
FblI GTMKAC 1 cut(s) 1903
FokI GGATG 3 cut(s) 483, 1619, 1855
FriOI GRGCYC 1 cut(s) 1526
FspBI CTAG 4 cut(s) 740, 1511, 1713, 1989
GlaI GCGC 1 cut(s) 1770
GsaI CCCAGC 1 cut(s) 1863
GsuI CTGGAG 1 cut(s) 1399
HaeIII GGCC 1 cut(s) 781
HapII CCGG 1 cut(s) 850
HgaI GACGC 1 cut(s) 277
HhaI GCGC 1 cut(s) 1771
Hin6I GCGC 1 cut(s) 1769
HinP1I GCGC 1 cut(s) 1769
HincII GTYRAC 1 cut(s) 643
HindII GTYRAC 1 cut(s) 643
HpaI GTTAAC 1 cut(s) 643
HpaII CCGG 1 cut(s) 850
HphI GGTGA 7 cut(s) 293, 674, 1066, 1361, 1861, 1904, 1962
Hpy166II GTNNAC 5 cut(s) 643, 965, 1003, 1357, 1904
Hpy188I TCNGA 9 cut(s) 52, 343, 370, 613, 942, 1118, 1269, 1528, 2064
Hpy8I GTNNAC 5 cut(s) 643, 965, 1003, 1357, 1904
HpyAV CCTTC 3 cut(s) 1804, 1882, 1951
HpyCH4III ACNGT 3 cut(s) 211, 844, 1968
HpyCH4IV ACGT 2 cut(s) 338, 1594
HpyF10VI GCNNNNNNNGC 8 cut(s) 632, 656, 1484, 1571, 1643, 1865, 1874, 2005
HpyF3I CTNAG 8 cut(s) 350, 783, 1122, 1268, 1320, 1538, 1629, 2030
HpySE526I ACGT 2 cut(s) 338, 1594
HspAI GCGC 1 cut(s) 1769
Ksp22I TGATCA 1 cut(s) 1366
KspAI GTTAAC 1 cut(s) 643
Kzo9I GATC 5 cut(s) 172, 586, 1366, 1625, 1817
LmnI GCTCC 4 cut(s) 460, 1418, 1468, 1571
LweI GCATC 8 cut(s) 416, 1321, 1465, 1496, 1552, 1597, 1756, 1877
MaeI CTAG 4 cut(s) 740, 1511, 1713, 1989
MaeII ACGT 2 cut(s) 338, 1594
MaeIII GTNAC 3 cut(s) 1038, 1513, 1968
MalI GATC 5 cut(s) 174, 588, 1368, 1627, 1819
MboI GATC 5 cut(s) 172, 586, 1366, 1625, 1817
MfeI CAATTG 2 cut(s) 974, 1253
MflI RGATCY 3 cut(s) 586, 1625, 1817
MhlI GDGCHC 1 cut(s) 1526
MlyI GAGTC 2 cut(s) 83, 1958
MnlI CCTC 7 cut(s) 229, 847, 935, 1045, 1053, 1888, 2047
MroXI GAANNNNTTC 1 cut(s) 687
MslI CAYNNNNRTG 4 cut(s) 932, 988, 1646, 2024
MspA1I CMGCKG 2 cut(s) 860, 1126
MspI CCGG 1 cut(s) 850
MspR9I CCNGG 1 cut(s) 851
MunI CAATTG 2 cut(s) 974, 1253
MvnI CGCG 1 cut(s) 1877
MwoI GCNNNNNNNGC 8 cut(s) 632, 656, 1484, 1571, 1643, 1865, 1874, 2005
NciI CCSGG 1 cut(s) 851
NcoI CCATGG 1 cut(s) 900
NdeI CATATG 1 cut(s) 717
NdeII GATC 5 cut(s) 172, 586, 1366, 1625, 1817
NlaIV GGNNCC 1 cut(s) 2049
NmuCI GTSAC 1 cut(s) 1968
NruI TCGCGA 1 cut(s) 1877
NspI RCATGY 5 cut(s) 639, 971, 1001, 1035, 2029
PaeI GCATGC 1 cut(s) 1035
PagI TCATGA 2 cut(s) 40, 199
PaqCI CACCTGC 2 cut(s) 650, 1984
PciI ACATGT 2 cut(s) 967, 997
PdmI GAANNNNTTC 1 cut(s) 687
PflMI CCANNNNNTGG 1 cut(s) 901
PfoI TCCNGGA 1 cut(s) 849
PleI GAGTC 2 cut(s) 82, 1957
PpsI GAGTC 2 cut(s) 82, 1957
Ppu21I YACGTR 1 cut(s) 1595
PscI ACATGT 2 cut(s) 967, 997
PsiI TTATAA 2 cut(s) 581, 1805
PspFI CCCAGC 1 cut(s) 1859
PspN4I GGNNCC 1 cut(s) 2049
PspPI GGNCC 2 cut(s) 1235, 2048
PstI CTGCAG 1 cut(s) 1981
PstNI CAGNNNCTG 1 cut(s) 181
PsuI RGATCY 3 cut(s) 586, 1625, 1817
PvuII CAGCTG 1 cut(s) 860
RruI TCGCGA 1 cut(s) 1877
RsaI GTAC 3 cut(s) 268, 722, 1674
RsaNI GTAC 3 cut(s) 267, 721, 1673
RseI CAYNNNNRTG 4 cut(s) 932, 988, 1646, 2024
Sau3AI GATC 5 cut(s) 172, 586, 1366, 1625, 1817
Sau96I GGNCC 2 cut(s) 1235, 2048
SchI GAGTC 2 cut(s) 83, 1958
ScrFI CCNGG 1 cut(s) 851
SduI GDGCHC 1 cut(s) 1526
SfaNI GCATC 8 cut(s) 416, 1321, 1465, 1496, 1552, 1597, 1756, 1877
SfcI CTRYAG 1 cut(s) 1977
SinI GGWCC 2 cut(s) 1235, 2048
SmiMI CAYNNNNRTG 4 cut(s) 932, 988, 1646, 2024
SpeI ACTAGT 1 cut(s) 1712
SphI GCATGC 1 cut(s) 1035
SsiI CCGC 4 cut(s) 881, 1126, 1440, 2008
SspI AATATT 2 cut(s) 441, 911
SspMI CTAG 4 cut(s) 740, 1511, 1713, 1989
StyD4I CCNGG 1 cut(s) 849
StyI CCWWGG 3 cut(s) 270, 900, 1077
TaaI ACNGT 3 cut(s) 211, 844, 1968
TaiI ACGT 2 cut(s) 341, 1597
TaqI TCGA 2 cut(s) 149, 1473
TatI WGTACW 1 cut(s) 720
TauI GCSGC 2 cut(s) 883, 1442
TscAI CASTG 4 cut(s) 701, 1581, 1665, 2026
TseFI GTSAC 1 cut(s) 1968
Tsp45I GTSAC 1 cut(s) 1968
TspDTI ATGAA 6 cut(s) 126, 188, 321, 683, 1263, 1823
TspGWI ACGGA 1 cut(s) 1700
TspRI CASTG 4 cut(s) 701, 1581, 1665, 2026
Van91I CCANNNNNTGG 1 cut(s) 901
VpaK11BI GGWCC 2 cut(s) 1235, 2048
XapI RAATTY 2 cut(s) 945, 2014
XceI RCATGY 5 cut(s) 639, 971, 1001, 1035, 2029
XmiI GTMKAC 1 cut(s) 1903
XmnI GAANNNNTTC 1 cut(s) 687
XspI CTAG 4 cut(s) 740, 1511, 1713, 1989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.