Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

23513037 .. 23514107

Gene Structure 1071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGCATGATTGGGTGATACTGATGCTTCTTGGGTTGATAGAGGTCATCCTTTATGTGATTCATCCATTTTATCGCTTCGTAGGAAAAGATATGATGACTGATCTGAAATATCCCTTGAAAAGTTGCACAGTACCTTTTTGGGCTGTCCCTATGTATGCAGTTGCACTGCCCATAGCAATTTTTGTTGTTGTCTATTTCCGCAGGAGAGATGTCTATGACCTTCACCATGCCATACTAGGTCTATTGTTCTCTGTTCTGATAACAGGGGTTCTTACAGATGCTATAAAAGATGCAGTTGGTCGACCCCGACCAGACTTCTTTTGGCGCTGTTTTCCAGATGGGAAGGATGTGTATGATAAATGGGGAAATGTTGTATGCCATGGTGTGAAGAGTGTTATAAAGGAGGGGCACAAGAGTTTTCCAAGTGGTCATACTTCATGGTCCTTTGCTGGTCTTGGATTTCTCTCACTGTATTTGTCAGGAAAAATACGTGATCGATCGCAAGGGCCATGCTGCAAAACTTTGCATTGTTATTCTTCCACTACTTGTTGCATCACTTGTTGGAGTTTCTCTAGTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008195 GO:0009987 GO:0016020 GO:0016021 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0031224 GO:0031226 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0044425 GO:0044459 GO:0044464 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01110 map00561 map00564 map01110

Pfam Domains

Protein Families

PAP2

Protein Analysis

194

Amino Acids

22.0

Weight (kDa)

8.97

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP2	PF01569	78 - 188	2e-18	PAP2 superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	398
AccI	GTMKAC	1 cut(s)	301
AciI	CCGC	1 cut(s)	199
AfaI	GTAC	1 cut(s)	132
AgsI	TTSAA	1 cut(s)	118
AoxI	GGCC	1 cut(s)	506
ApeKI	GCWGC	1 cut(s)	513
AspLEI	GCGC	1 cut(s)	327
AspS9I	GGNCC	2 cut(s)	441, 506
AsuHPI	GGTGA	2 cut(s)	25, 215
AvaII	GGWCC	1 cut(s)	441
BaeGI	GKGCMC	1 cut(s)	411
BbvI	GCAGC	1 cut(s)	500
BccI	CCATC	1 cut(s)	332
BfaI	CTAG	2 cut(s)	236, 573
BfoI	RGCGCY	1 cut(s)	328
BisI	GCNGC	1 cut(s)	514
BlsI	GCNGC	1 cut(s)	515
Bme18I	GGWCC	1 cut(s)	441
BmgT120I	GGNCC	2 cut(s)	441, 506
BmsI	GCATC	4 cut(s)	12, 268, 280, 561
Bsa29I	ATCGAT	1 cut(s)	496
BsaAI	YACGTR	1 cut(s)	491
BsaJI	CCNNGG	1 cut(s)	379
BseCI	ATCGAT	1 cut(s)	496
BseDI	CCNNGG	1 cut(s)	379
BseGI	GGATG	3 cut(s)	45, 61, 352
BseSI	GKGCMC	1 cut(s)	411
BseXI	GCAGC	1 cut(s)	500
Bsh1285I	CGRYCG	1 cut(s)	500
BshFI	GGCC	1 cut(s)	508
BshVI	ATCGAT	1 cut(s)	496
BsiEI	CGRYCG	1 cut(s)	500
BslFI	GGGAC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	508
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp143I	GATC	3 cut(s)	100, 493, 497
Bsp19I	CCATGG	1 cut(s)	379
BspACI	CCGC	1 cut(s)	199
BspANI	GGCC	1 cut(s)	508
BspDI	ATCGAT	1 cut(s)	496
BssECI	CCNNGG	1 cut(s)	379
BssMI	GATC	3 cut(s)	100, 493, 497
BssT1I	CCWWGG	1 cut(s)	379
Bst4CI	ACNGT	2 cut(s)	130, 471
Bst6I	CTCTTC	1 cut(s)	383
BstBAI	YACGTR	1 cut(s)	491
BstDSI	CCRYGG	1 cut(s)	379
BstF5I	GGATG	3 cut(s)	45, 61, 352
BstH2I	RGCGCY	1 cut(s)	328
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	3 cut(s)	103, 496, 500
BstMBI	GATC	3 cut(s)	100, 493, 497
BstMCI	CGRYCG	1 cut(s)	500
BstSLI	GKGCMC	1 cut(s)	411
BstV1I	GCAGC	1 cut(s)	500
Bsu15I	ATCGAT	1 cut(s)	496
BsuRI	GGCC	1 cut(s)	508
BsuTUI	ATCGAT	1 cut(s)	496
BtgI	CCRYGG	1 cut(s)	379
BtsCI	GGATG	3 cut(s)	45, 61, 352
BtsI	GCAGTG	1 cut(s)	164
BtsIMutI	CAGTG	2 cut(s)	164, 467
CfoI	GCGC	1 cut(s)	327
Cfr13I	GGNCC	2 cut(s)	441, 506
ClaI	ATCGAT	1 cut(s)	496
Csp6I	GTAC	1 cut(s)	131
CviAII	CATG	5 cut(s)	5, 227, 380, 438, 510
CviJI	RGCY	2 cut(s)	143, 508
CviKI_1	RGCY	2 cut(s)	143, 508
CviQI	GTAC	1 cut(s)	131
DpnI	GATC	3 cut(s)	102, 495, 499
DpnII	GATC	3 cut(s)	100, 493, 497
Eam1104I	CTCTTC	1 cut(s)	383
EarI	CTCTTC	1 cut(s)	383
Eco130I	CCWWGG	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	441
EcoT14I	CCWWGG	1 cut(s)	379
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	379
FaeI	CATG	5 cut(s)	8, 230, 383, 441, 513
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	5 cut(s)	4, 226, 379, 437, 509
FblI	GTMKAC	1 cut(s)	301
Fnu4HI	GCNGC	1 cut(s)	514
FokI	GGATG	3 cut(s)	32, 48, 359
Fsp4HI	GCNGC	1 cut(s)	514
FspBI	CTAG	2 cut(s)	236, 573
GlaI	GCGC	1 cut(s)	326
GluI	GCNGC	1 cut(s)	514
HaeII	RGCGCY	1 cut(s)	328
HaeIII	GGCC	1 cut(s)	508
HhaI	GCGC	1 cut(s)	327
Hin1II	CATG	5 cut(s)	8, 230, 383, 441, 513
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HincII	GTYRAC	1 cut(s)	302
HindII	GTYRAC	1 cut(s)	302
HinfI	GANTC	1 cut(s)	58
HphI	GGTGA	2 cut(s)	25, 215
Hpy166II	GTNNAC	1 cut(s)	302
Hpy188I	TCNGA	2 cut(s)	105, 258
Hpy188III	TCNNGA	2 cut(s)	335, 480
Hpy8I	GTNNAC	1 cut(s)	302
HpyAV	CCTTC	2 cut(s)	230, 337
HpyCH4III	ACNGT	2 cut(s)	130, 471
HpyCH4IV	ACGT	1 cut(s)	490
HpyCH4V	TGCA	8 cut(s)	4, 126, 158, 164, 293, 516, 526, 552
HpySE526I	ACGT	1 cut(s)	490
Hsp92II	CATG	5 cut(s)	8, 230, 383, 441, 513
HspAI	GCGC	1 cut(s)	325
Kzo9I	GATC	3 cut(s)	100, 493, 497
LpnPI	CCDG	6 cut(s)	187, 249, 324, 348, 435, 465
Lsp1109I	GCAGC	1 cut(s)	500
LweI	GCATC	4 cut(s)	12, 268, 280, 561
MaeI	CTAG	2 cut(s)	236, 573
MaeII	ACGT	1 cut(s)	490
MalI	GATC	3 cut(s)	102, 495, 499
MboI	GATC	3 cut(s)	100, 493, 497
MboII	GAAGA	2 cut(s)	400, 528
MhlI	GDGCHC	1 cut(s)	411
MluCI	AATT	1 cut(s)	177
MmeI	TCCRAC	1 cut(s)	542
MnlI	CCTC	2 cut(s)	34, 397
Mph1103I	ATGCAT	1 cut(s)	6
NcoI	CCATGG	1 cut(s)	379
NdeII	GATC	3 cut(s)	100, 493, 497
NlaIII	CATG	5 cut(s)	8, 230, 383, 441, 513
NsiI	ATGCAT	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	515
Ple19I	CGATCG	1 cut(s)	500
Ppu21I	YACGTR	1 cut(s)	491
PsiI	TTATAA	1 cut(s)	398
PspPI	GGNCC	2 cut(s)	441, 506
PvuI	CGATCG	1 cut(s)	500
RsaI	GTAC	1 cut(s)	132
RsaNI	GTAC	1 cut(s)	131
SalI	GTCGAC	1 cut(s)	300
SatI	GCNGC	1 cut(s)	514
Sau3AI	GATC	3 cut(s)	100, 493, 497
Sau96I	GGNCC	2 cut(s)	441, 506
SduI	GDGCHC	1 cut(s)	411
SetI	ASST	5 cut(s)	45, 136, 222, 241, 493
SfaNI	GCATC	4 cut(s)	12, 268, 280, 561
SinI	GGWCC	1 cut(s)	441
Sse9I	AATT	1 cut(s)	177
SsiI	CCGC	1 cut(s)	199
SspMI	CTAG	2 cut(s)	236, 573
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	2 cut(s)	130, 471
TaiI	ACGT	1 cut(s)	493
TaqI	TCGA	2 cut(s)	301, 496
TasI	AATT	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	58
TscAI	CASTG	2 cut(s)	171, 474
TseI	GCWGC	1 cut(s)	513
TspDTI	ATGAA	2 cut(s)	50, 426
TspRI	CASTG	2 cut(s)	171, 474
VpaK11BI	GGWCC	1 cut(s)	441
XcmI	CCANNNNNNNNNTGG	1 cut(s)	318
XmiI	GTMKAC	1 cut(s)	301
XspI	CTAG	2 cut(s)	236, 573
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.