pycom17g25440

Lipid phosphate phosphatase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Forward (+)
23514168 .. 23515033
866 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 333 bp
ATGGTAAGTAAGCTACTTGTTGAACCTTATTTGTCAATAACAATCAGGGAATCATTTTTTGCAGGCCTTACGGTTGCCACCTTTTGCTATTTGAAGTTCTTTCCACCCCCATACCATGCCCAAGGTTGGGGCCCTTATGCTTACTTCCAAGTGTTGGAGGAGTTGCGTTCAGGGGCACAAGTAACCAGCACAATAAATGGGAGCAACGCGCAGGTCACAGAGGCTCGGGTTGAGAATCAAGTAGACGAAACAAGTAACCATGGATGTATGGGGTTAACATTAGCACGTGGTTCTGGTTCAACATTGGAAGATTTAGAATCTGGGAGGAAATAG

Protein Analysis

111

Amino Acids

12.08

Weight (kDa)

5.26

Isoelectric Point (pI)

28.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 202
AccB7I CCANNNNNTGG 1 cut(s) 154
AccI GTMKAC 1 cut(s) 243
AccII CGCG 1 cut(s) 209
AcvI CACGTG 1 cut(s) 287
AfiI CCNNNNNNNGG 3 cut(s) 126, 127, 154
AgsI TTSAA 3 cut(s) 23, 94, 300
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
Ama87I CYCGRG 1 cut(s) 225
AoxI GGCC 2 cut(s) 64, 130
ApaI GGGCCC 1 cut(s) 134
AspLEI GCGC 1 cut(s) 211
AspS9I GGNCC 2 cut(s) 130, 131
AvaI CYCGRG 1 cut(s) 225
BaeGI GKGCMC 2 cut(s) 134, 178
BanII GRGCYC 1 cut(s) 134
BbrPI CACGTG 1 cut(s) 287
BfuAI ACCTGC 1 cut(s) 202
BmeT110I CYCGRG 1 cut(s) 225
BmgT120I GGNCC 2 cut(s) 130, 131
BmiI GGNNCC 2 cut(s) 131, 132
BsaAI YACGTR 1 cut(s) 287
BsaJI CCNNGG 2 cut(s) 121, 259
Bsc4I CCNNNNNNNGG 3 cut(s) 126, 127, 154
BseDI CCNNGG 2 cut(s) 121, 259
BseGI GGATG 1 cut(s) 269
BseLI CCNNNNNNNGG 3 cut(s) 126, 127, 154
BseRI GAGGAG 1 cut(s) 173
BseSI GKGCMC 2 cut(s) 134, 178
Bsh1236I CGCG 1 cut(s) 209
BshFI GGCC 2 cut(s) 66, 132
BsiHKCI CYCGRG 1 cut(s) 225
BslI CCNNNNNNNGG 3 cut(s) 126, 127, 154
BsnI GGCC 2 cut(s) 66, 132
BsoBI CYCGRG 1 cut(s) 225
Bsp120I GGGCCC 1 cut(s) 130
Bsp1286I GDGCHC 2 cut(s) 134, 178
Bsp19I CCATGG 1 cut(s) 259
BspANI GGCC 2 cut(s) 66, 132
BspFNI CGCG 1 cut(s) 209
BspLI GGNNCC 2 cut(s) 131, 132
BspMI ACCTGC 1 cut(s) 202
BssECI CCNNGG 2 cut(s) 121, 259
BssT1I CCWWGG 2 cut(s) 121, 259
Bst4CI ACNGT 1 cut(s) 73
BstBAI YACGTR 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 64
BstDSI CCRYGG 1 cut(s) 259
BstF5I GGATG 1 cut(s) 269
BstFNI CGCG 1 cut(s) 209
BstHHI GCGC 1 cut(s) 211
BstSLI GKGCMC 2 cut(s) 134, 178
BstUI CGCG 1 cut(s) 209
BsuRI GGCC 2 cut(s) 66, 132
BtgI CCRYGG 1 cut(s) 259
BtsCI GGATG 1 cut(s) 269
BveI ACCTGC 1 cut(s) 202
Cac8I GCNNGC 1 cut(s) 64
CfoI GCGC 1 cut(s) 211
Cfr13I GGNCC 2 cut(s) 130, 131
CviAII CATG 2 cut(s) 116, 260
CviJI RGCY 4 cut(s) 13, 66, 132, 224
CviKI_1 RGCY 4 cut(s) 13, 66, 132, 224
Eco130I CCWWGG 2 cut(s) 121, 259
Eco147I AGGCCT 1 cut(s) 66
Eco24I GRGCYC 1 cut(s) 134
Eco72I CACGTG 1 cut(s) 287
Eco88I CYCGRG 1 cut(s) 225
EcoO109I RGGNCCY 2 cut(s) 130, 131
EcoT14I CCWWGG 2 cut(s) 121, 259
EcoT38I GRGCYC 1 cut(s) 134
ErhI CCWWGG 2 cut(s) 121, 259
FaeI CATG 2 cut(s) 119, 263
FaiI YATR 5 cut(s) 112, 117, 138, 261, 269
FatI CATG 2 cut(s) 115, 259
FblI GTMKAC 1 cut(s) 243
FokI GGATG 1 cut(s) 276
FriOI GRGCYC 1 cut(s) 134
GlaI GCGC 1 cut(s) 210
HaeIII GGCC 2 cut(s) 66, 132
HhaI GCGC 1 cut(s) 211
Hin1II CATG 2 cut(s) 119, 263
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HincII GTYRAC 1 cut(s) 276
HindII GTYRAC 1 cut(s) 276
HinfI GANTC 3 cut(s) 50, 235, 317
HpaI GTTAAC 1 cut(s) 276
Hpy166II GTNNAC 2 cut(s) 244, 276
Hpy8I GTNNAC 2 cut(s) 244, 276
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4IV ACGT 1 cut(s) 286
HpyCH4V TGCA 1 cut(s) 62
HpySE526I ACGT 1 cut(s) 286
Hsp92II CATG 2 cut(s) 119, 263
HspAI GCGC 1 cut(s) 209
KspAI GTTAAC 1 cut(s) 276
LmnI GCTCC 1 cut(s) 201
LpnPI CCDG 7 cut(s) 31, 48, 156, 197, 199, 279, 306
MaeII ACGT 1 cut(s) 286
MaeIII GTNAC 3 cut(s) 181, 214, 254
MboII GAAGA 1 cut(s) 320
MhlI GDGCHC 2 cut(s) 134, 178
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 3 cut(s) 151, 214, 318
MseI TTAA 1 cut(s) 275
MvnI CGCG 1 cut(s) 209
NcoI CCATGG 1 cut(s) 259
NlaIII CATG 2 cut(s) 119, 263
NlaIV GGNNCC 2 cut(s) 131, 132
NmuCI GTSAC 1 cut(s) 214
PceI AGGCCT 1 cut(s) 66
PfeI GAWTC 3 cut(s) 50, 235, 317
PflMI CCANNNNNTGG 1 cut(s) 154
PmaCI CACGTG 1 cut(s) 287
PmlI CACGTG 1 cut(s) 287
Ppu21I YACGTR 1 cut(s) 287
PspCI CACGTG 1 cut(s) 287
PspN4I GGNNCC 2 cut(s) 131, 132
PspOMI GGGCCC 1 cut(s) 130
PspPI GGNCC 2 cut(s) 130, 131
SaqAI TTAA 1 cut(s) 275
Sau96I GGNCC 2 cut(s) 130, 131
SduI GDGCHC 2 cut(s) 134, 178
SetI ASST 6 cut(s) 15, 28, 83, 127, 216, 289
SseBI AGGCCT 1 cut(s) 66
StuI AGGCCT 1 cut(s) 66
StyI CCWWGG 2 cut(s) 121, 259
TaaI ACNGT 1 cut(s) 73
TaiI ACGT 1 cut(s) 289
TfiI GAWTC 3 cut(s) 50, 235, 317
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
TseFI GTSAC 1 cut(s) 214
Tsp45I GTSAC 1 cut(s) 214
Van91I CCANNNNNTGG 1 cut(s) 154
XmiI GTMKAC 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.