pycom17g25950

Uridine 5-monophosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Reverse (-)
24281775 .. 24282212
438 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 354 bp
ATGAGCTCAGCCGGTAACTTTGCAAAGGGAGATTACACAGCTGCCGCGGTGAAGATTGCGGAGGAGCATTCTGATTTTGTGATTGGCTTCATTTCAGTTAATCCAGCATCATGGCCAGGGGCACCCGTAAATCCAACTTTCATCCAGGCAACTCCTGGAGTGCAATTAGTGACCGGCGGTGATGCTCTTGGCCAGCAATATAACACTCCAAACTCCGTCATCTATGATAGAGGTAGTGACATCATAATTGTGGGCCGTGGAATCATAAAAGCCGCAAACCCTGCTGAGGTCGCTCGTGAATATCGTCGTCAAGGCTGGGATGCATACTTGGCTAAATGCAGCAACAGTAGCTAA

Protein Analysis

118

Amino Acids

12.35

Weight (kDa)

5.67

Isoelectric Point (pI)

23.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OMPdecase PF00215 1 - 101 1.4e-21 Orotidine 5'-phosphate decarboxylase / HUMPS family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 121
AccII CGCG 1 cut(s) 47
AciI CCGC 5 cut(s) 45, 47, 59, 177, 273
AcoI YGGCCR 2 cut(s) 113, 190
AfiI CCNNNNNNNGG 1 cut(s) 286
AjnI CCWGG 3 cut(s) 115, 144, 154
AluBI AGCT 3 cut(s) 6, 41, 351
AluI AGCT 3 cut(s) 6, 41, 351
Alw21I GWGCWC 1 cut(s) 8
AoxI GGCC 3 cut(s) 113, 190, 253
ApeKI GCWGC 2 cut(s) 41, 339
AspS9I GGNCC 1 cut(s) 253
AsuHPI GGTGA 2 cut(s) 61, 191
BaeGI GKGCMC 1 cut(s) 124
BalI TGGCCA 2 cut(s) 115, 192
BanI GGYRCC 1 cut(s) 121
BanII GRGCYC 1 cut(s) 8
BauI CACGAG 1 cut(s) 294
Bbv12I GWGCWC 1 cut(s) 8
BbvCI CCTCAGC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 28
BceAI ACGGC 1 cut(s) 240
BciT130I CCWGG 3 cut(s) 117, 146, 156
BisI GCNGC 4 cut(s) 42, 45, 273, 340
BlpI GCTNAGC 1 cut(s) 7
BlsI GCNGC 4 cut(s) 43, 46, 274, 341
Bme1390I CCNGG 3 cut(s) 117, 146, 156
BmgT120I GGNCC 1 cut(s) 253
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 3 cut(s) 117, 146, 156
BmsI GCATC 3 cut(s) 116, 172, 310
BpmI CTGGAG 1 cut(s) 177
Bpu10I CCTNAGC 1 cut(s) 285
Bpu1102I GCTNAGC 1 cut(s) 7
BsaJI CCNNGG 3 cut(s) 45, 116, 256
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse118I RCCGGY 2 cut(s) 11, 173
BseBI CCWGG 3 cut(s) 117, 146, 156
BseDI CCNNGG 3 cut(s) 45, 116, 256
BseGI GGATG 2 cut(s) 141, 325
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMII CTCAG 2 cut(s) 21, 276
BseRI GAGGAG 1 cut(s) 77
BseSI GKGCMC 1 cut(s) 124
BseXI GCAGC 1 cut(s) 28
BseYI CCCAGC 1 cut(s) 315
Bsh1236I CGCG 1 cut(s) 47
BshFI GGCC 3 cut(s) 115, 192, 255
BshNI GGYRCC 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 2 cut(s) 12, 174
BslI CCNNNNNNNGG 1 cut(s) 286
BsmI GAATGC 1 cut(s) 67
BsnI GGCC 3 cut(s) 115, 192, 255
Bsp1286I GDGCHC 2 cut(s) 8, 124
Bsp1720I GCTNAGC 1 cut(s) 7
BspACI CCGC 5 cut(s) 45, 47, 59, 177, 273
BspANI GGCC 3 cut(s) 115, 192, 255
BspCNI CTCAG 2 cut(s) 20, 277
BspFNI CGCG 1 cut(s) 47
BspLI GGNNCC 1 cut(s) 123
BspT107I GGYRCC 1 cut(s) 121
BsrFI RCCGGY 2 cut(s) 11, 173
BssAI RCCGGY 2 cut(s) 11, 173
BssECI CCNNGG 3 cut(s) 45, 116, 256
BssSI CACGAG 1 cut(s) 294
Bst2BI CACGAG 1 cut(s) 294
Bst2UI CCWGG 3 cut(s) 117, 146, 156
Bst4CI ACNGT 1 cut(s) 347
BstAPI GCANNNNNTGC 1 cut(s) 281
BstC8I GCNNGC 1 cut(s) 194
BstDEI CTNAG 2 cut(s) 7, 285
BstDSI CCRYGG 2 cut(s) 45, 256
BstF5I GGATG 2 cut(s) 141, 325
BstFNI CGCG 1 cut(s) 47
BstMWI GCNNNNNNNGC 4 cut(s) 281, 290, 329, 348
BstNI CCWGG 3 cut(s) 117, 146, 156
BstSCI CCNGG 3 cut(s) 115, 144, 154
BstSLI GKGCMC 1 cut(s) 124
BstUI CGCG 1 cut(s) 47
BstV1I GCAGC 1 cut(s) 28
BstXI CCANNNNNNTGG 1 cut(s) 111
BsuRI GGCC 3 cut(s) 115, 192, 255
BtgI CCRYGG 2 cut(s) 45, 256
BtsCI GGATG 2 cut(s) 141, 325
Cac8I GCNNGC 1 cut(s) 194
Cfr10I RCCGGY 2 cut(s) 11, 173
Cfr13I GGNCC 1 cut(s) 253
Cfr42I CCGCGG 1 cut(s) 48
CviAII CATG 1 cut(s) 111
DdeI CTNAG 2 cut(s) 7, 285
EaeI YGGCCR 2 cut(s) 113, 190
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 3 cut(s) 115, 144, 154
EcoT22I ATGCAT 1 cut(s) 325
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 1 cut(s) 114
FaiI YATR 6 cut(s) 112, 201, 225, 245, 266, 325
FatI CATG 1 cut(s) 110
Fnu4HI GCNGC 4 cut(s) 42, 45, 273, 340
FokI GGATG 2 cut(s) 128, 332
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 4 cut(s) 42, 45, 273, 340
GluI GCNGC 4 cut(s) 42, 45, 273, 340
GsaI CCCAGC 1 cut(s) 319
GsuI CTGGAG 1 cut(s) 177
HaeIII GGCC 3 cut(s) 115, 192, 255
HapII CCGG 2 cut(s) 12, 174
Hin1II CATG 1 cut(s) 114
HinfI GANTC 1 cut(s) 261
HpaII CCGG 2 cut(s) 12, 174
HphI GGTGA 2 cut(s) 61, 191
Hpy188I TCNGA 1 cut(s) 73
Hpy188III TCNNGA 1 cut(s) 296
Hpy99I CGWCG 1 cut(s) 309
HpyCH4III ACNGT 1 cut(s) 347
HpyCH4V TGCA 4 cut(s) 23, 163, 323, 339
HpyF10VI GCNNNNNNNGC 4 cut(s) 281, 290, 329, 348
HpyF3I CTNAG 2 cut(s) 7, 285
Hsp92II CATG 1 cut(s) 114
KspI CCGCGG 1 cut(s) 48
LmnI GCTCC 1 cut(s) 64
Lsp1109I GCAGC 1 cut(s) 28
LweI GCATC 3 cut(s) 116, 172, 310
MaeIII GTNAC 3 cut(s) 14, 169, 236
MboII GAAGA 1 cut(s) 64
MhlI GDGCHC 2 cut(s) 8, 124
MlsI TGGCCA 2 cut(s) 115, 192
MluCI AATT 2 cut(s) 164, 246
MluNI TGGCCA 2 cut(s) 115, 192
MmeI TCCRAC 1 cut(s) 158
MnlI CCTC 3 cut(s) 55, 224, 280
Mox20I TGGCCA 2 cut(s) 115, 192
Mph1103I ATGCAT 1 cut(s) 325
MscI TGGCCA 2 cut(s) 115, 192
MseI TTAA 1 cut(s) 99
MslI CAYNNNNRTG 1 cut(s) 248
Msp20I TGGCCA 2 cut(s) 115, 192
MspA1I CMGCKG 2 cut(s) 41, 47
MspI CCGG 2 cut(s) 12, 174
MspR9I CCNGG 3 cut(s) 117, 146, 156
Mva1269I GAATGC 1 cut(s) 67
MvaI CCWGG 3 cut(s) 117, 146, 156
MvnI CGCG 1 cut(s) 47
MwoI GCNNNNNNNGC 4 cut(s) 281, 290, 329, 348
NlaIII CATG 1 cut(s) 114
NlaIV GGNNCC 1 cut(s) 123
NmuCI GTSAC 2 cut(s) 169, 236
NsiI ATGCAT 1 cut(s) 325
PcsI WCGNNNNNNNCGW 1 cut(s) 301
PctI GAATGC 1 cut(s) 67
PfeI GAWTC 1 cut(s) 261
PfoI TCCNGGA 1 cut(s) 154
PkrI GCNGC 4 cut(s) 43, 46, 274, 341
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 3 cut(s) 115, 144, 154
PspFI CCCAGC 1 cut(s) 315
PspGI CCWGG 3 cut(s) 115, 144, 154
PspN4I GGNNCC 1 cut(s) 123
PspPI GGNCC 1 cut(s) 253
PvuII CAGCTG 1 cut(s) 41
RseI CAYNNNNRTG 1 cut(s) 248
SacI GAGCTC 1 cut(s) 8
SacII CCGCGG 1 cut(s) 48
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 4 cut(s) 42, 45, 273, 340
Sau96I GGNCC 1 cut(s) 253
ScrFI CCNGG 3 cut(s) 117, 146, 156
SduI GDGCHC 2 cut(s) 8, 124
SetI ASST 5 cut(s) 8, 43, 235, 291, 353
SfaNI GCATC 3 cut(s) 116, 172, 310
Sfr303I CCGCGG 1 cut(s) 48
SgrBI CCGCGG 1 cut(s) 48
SmiMI CAYNNNNRTG 1 cut(s) 248
Sse9I AATT 2 cut(s) 164, 246
SsiI CCGC 5 cut(s) 45, 47, 59, 177, 273
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 3 cut(s) 115, 144, 154
TaaI ACNGT 1 cut(s) 347
TasI AATT 2 cut(s) 164, 246
TauI GCSGC 2 cut(s) 47, 275
TfiI GAWTC 1 cut(s) 261
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TseFI GTSAC 2 cut(s) 169, 236
TseI GCWGC 2 cut(s) 41, 339
Tsp45I GTSAC 2 cut(s) 169, 236
TspDTI ATGAA 2 cut(s) 79, 130
TspGWI ACGGA 1 cut(s) 205
XcmI CCANNNNNNNNNTGG 1 cut(s) 152
Zsp2I ATGCAT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.