Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

24958701 .. 24960720

Gene Structure 2020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCTGACCGATTTAAACCAAAACTCATTATTGCCGGGGCTAGTGCTTATCCTCGAGATTTTGACTATCCTCGCATGAGGAAGATTGCGGATTCAGTTGGTGCTTTTCTTATGATGGATATGGCTCACATAAGTGGGCTTGTTGCTGCTTCTGTGCTTGCAAGTCCCTTTGACTACTGCGACATTGTGACAACAACAACACACAAGTCTTTAAGAGGTCCAAGAGGTGGGATGATCGTCTTCAAGAAAGATACAGTTCTCGGGGTTGATTTAGAAACTGCCATCAACAATGCTGTTTTCCCAGGTTTACAGGGTGGTCCTCATAACCACACTATTGGGGGCCTTGCAGTTTGCTTGAAGTATGCACAGTCCCCAGAGTTTAAGGCTTACCAGAACCAGGTGGTGTCTAATTGCAGGGCTCTTGCTAGCCGATTAACTGAACTTGGATACAAACTAGTTTCTGGTGGAAGTGATAACCATCTGGTTCTTGTGGATCTCCGGCCTTTAGGTATCGATGGAGCTCGAGTGGAGAAAATTCTTGACATGGCTTCTATCACCCTTAACAAGAACTCAGTACCTGGTGATAAAAGTGCTGTAGTGCCCGGTGGCATTCGCATTGGATCACCTGCCATGACGACAAGAGGATTCACCAAGAAAGAATTTGTAGCTGTTGCAGACTACATTCATGAGGGCGTGCAGATAACAATTGATGCTAAACGCGCGGCCTCAGGATCAAAGCTCCAAGATTTTATGAAGTTTGTAGCTTCCCCTGAGTTCTCCCTAAAGGACCGAGTGTCAGATCTGCAGAGAAGAGTTGAGGCCCTTACCACCCAGTTCCCATTGCCTGGAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016740 GO:0016741 GO:0016742 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00260 ko00460 ko00630 ko00670 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko01523 map00260 map00460 map00630 map00670 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map01523

Pfam Domains

Protein Families

SHMT

Protein Analysis

285

Amino Acids

30.6

Weight (kDa)

9.28

Isoelectric Point (pI)

32.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SHMT	PF00464	2 - 228	1.8e-106	Serine hydroxymethyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	634
Acc36I	ACCTGC	1 cut(s)	634
AccB7I	CCANNNNNTGG	2 cut(s)	227, 845
AccII	CGCG	2 cut(s)	720, 722
AciI	CCGC	2 cut(s)	89, 722
AclWI	GGATC	3 cut(s)	501, 628, 739
AcsI	RAATTY	2 cut(s)	534, 659
AfaI	GTAC	1 cut(s)	576
AfiI	CCNNNNNNNGG	3 cut(s)	227, 397, 845
AgsI	TTSAA	2 cut(s)	244, 358
AhdI	GACNNNNNGTC	1 cut(s)	793
AhlI	ACTAGT	1 cut(s)	454
AjnI	CCWGG	4 cut(s)	301, 396, 577, 844
AleI	CACNNNNGTG	1 cut(s)	132
AluBI	AGCT	4 cut(s)	521, 668, 739, 764
AluI	AGCT	4 cut(s)	521, 668, 739, 764
Alw21I	GWGCWC	1 cut(s)	523
AlwI	GGATC	3 cut(s)	501, 628, 739
AlwNI	CAGNNNCTG	1 cut(s)	578
Ama87I	CYCGRG	3 cut(s)	54, 260, 522
AoxI	GGCC	4 cut(s)	340, 500, 723, 819
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	2 cut(s)	534, 659
AspLEI	GCGC	1 cut(s)	722
AspS9I	GGNCC	5 cut(s)	218, 317, 340, 787, 820
AsuC2I	CCSGG	2 cut(s)	37, 603
AsuHPI	GGTGA	4 cut(s)	547, 593, 615, 640
AsuNHI	GCTAGC	1 cut(s)	425
AvaI	CYCGRG	3 cut(s)	54, 260, 522
AvaII	GGWCC	3 cut(s)	218, 317, 787
AxyI	CCTNAGG	1 cut(s)	727
BaeGI	GKGCMC	1 cut(s)	603
BanII	GRGCYC	2 cut(s)	421, 523
BbsI	GAAGAC	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	523
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	4 cut(s)	109, 290, 486, 509
BciT130I	CCWGG	4 cut(s)	303, 398, 579, 846
BciVI	GTATCC	1 cut(s)	440
BcnI	CCSGG	2 cut(s)	37, 603
BcuI	ACTAGT	1 cut(s)	454
BfaI	CTAG	3 cut(s)	42, 426, 455
BfmI	CTRYAG	2 cut(s)	594, 803
BfuAI	ACCTGC	1 cut(s)	634
BfuI	GTATCC	1 cut(s)	440
BglII	AGATCT	1 cut(s)	799
BisI	GCNGC	2 cut(s)	147, 723
BlsI	GCNGC	2 cut(s)	148, 724
Bme1390I	CCNGG	6 cut(s)	37, 303, 398, 579, 603, 846
Bme18I	GGWCC	3 cut(s)	218, 317, 787
BmeRI	GACNNNNNGTC	1 cut(s)	793
BmeT110I	CYCGRG	3 cut(s)	54, 260, 522
BmgT120I	GGNCC	5 cut(s)	218, 317, 340, 787, 820
BmiI	GGNNCC	1 cut(s)	341
BmrFI	CCNGG	6 cut(s)	37, 303, 398, 579, 603, 846
BmrI	ACTGGG	1 cut(s)	826
BmsI	GCATC	1 cut(s)	700
BmtI	GCTAGC	1 cut(s)	429
BmuI	ACTGGG	1 cut(s)	826
BpiI	GAAGAC	1 cut(s)	232
BpuMI	CCSGG	2 cut(s)	37, 603
Bsa29I	ATCGAT	1 cut(s)	513
BsaBI	GATNNNNATC	1 cut(s)	477
BsaJI	CCNNGG	2 cut(s)	36, 301
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bsc4I	CCNNNNNNNGG	3 cut(s)	227, 397, 845
Bse1I	ACTGG	1 cut(s)	832
Bse21I	CCTNAGG	1 cut(s)	727
Bse3DI	GCAATG	1 cut(s)	839
Bse8I	GATNNNNATC	1 cut(s)	477
BseBI	CCWGG	4 cut(s)	303, 398, 579, 846
BseCI	ATCGAT	1 cut(s)	513
BseDI	CCNNGG	2 cut(s)	36, 301
BseGI	GGATG	1 cut(s)	237
BseJI	GATNNNNATC	1 cut(s)	477
BseLI	CCNNNNNNNGG	3 cut(s)	227, 397, 845
BseMI	GCAATG	1 cut(s)	839
BseMII	CTCAG	3 cut(s)	585, 741, 762
BseNI	ACTGG	1 cut(s)	832
BseSI	GKGCMC	1 cut(s)	603
BseXI	GCAGC	1 cut(s)	133
BsgI	GTGCAG	1 cut(s)	716
Bsh1236I	CGCG	2 cut(s)	720, 722
BshFI	GGCC	4 cut(s)	342, 502, 725, 821
BshVI	ATCGAT	1 cut(s)	513
BsiHKAI	GWGCWC	1 cut(s)	523
BsiHKCI	CYCGRG	3 cut(s)	54, 260, 522
BsiSI	CCGG	3 cut(s)	36, 499, 603
BslFI	GGGAC	2 cut(s)	150, 355
BslI	CCNNNNNNNGG	3 cut(s)	227, 397, 845
BsmFI	GGGAC	2 cut(s)	150, 355
BsmI	GAATGC	1 cut(s)	609
BsnI	GGCC	4 cut(s)	342, 502, 725, 821
BsoBI	CYCGRG	3 cut(s)	54, 260, 522
Bsp1286I	GDGCHC	3 cut(s)	421, 523, 603
Bsp143I	GATC	5 cut(s)	234, 493, 620, 731, 799
BspACI	CCGC	2 cut(s)	89, 722
BspANI	GGCC	4 cut(s)	342, 502, 725, 821
BspCNI	CTCAG	3 cut(s)	584, 740, 763
BspDI	ATCGAT	1 cut(s)	513
BspFNI	CGCG	2 cut(s)	720, 722
BspHI	TCATGA	1 cut(s)	685
BspLI	GGNNCC	1 cut(s)	341
BspMAI	CTGCAG	1 cut(s)	807
BspMI	ACCTGC	1 cut(s)	634
BspOI	GCTAGC	1 cut(s)	429
BspPI	GGATC	3 cut(s)	501, 628, 739
BsrDI	GCAATG	1 cut(s)	839
BsrI	ACTGG	1 cut(s)	832
BssECI	CCNNGG	2 cut(s)	36, 301
BssMI	GATC	5 cut(s)	234, 493, 620, 731, 799
Bst2UI	CCWGG	4 cut(s)	303, 398, 579, 846
Bst4CI	ACNGT	2 cut(s)	256, 369
Bst6I	CTCTTC	1 cut(s)	805
BstC8I	GCNNGC	3 cut(s)	159, 427, 695
BstDEI	CTNAG	3 cut(s)	571, 727, 771
BstF5I	GGATG	1 cut(s)	237
BstFNI	CGCG	2 cut(s)	720, 722
BstHHI	GCGC	1 cut(s)	722
BstKTI	GATC	5 cut(s)	237, 496, 623, 734, 802
BstMBI	GATC	5 cut(s)	234, 493, 620, 731, 799
BstMWI	GCNNNNNNNGC	1 cut(s)	719
BstNI	CCWGG	4 cut(s)	303, 398, 579, 846
BstSCI	CCNGG	6 cut(s)	35, 301, 396, 577, 601, 844
BstSFI	CTRYAG	2 cut(s)	594, 803
BstSLI	GKGCMC	1 cut(s)	603
BstUI	CGCG	2 cut(s)	720, 722
BstV1I	GCAGC	1 cut(s)	133
BstV2I	GAAGAC	1 cut(s)	232
BstX2I	RGATCY	2 cut(s)	493, 799
BstXI	CCANNNNNNTGG	1 cut(s)	335
BstYI	RGATCY	2 cut(s)	493, 799
Bsu15I	ATCGAT	1 cut(s)	513
Bsu36I	CCTNAGG	1 cut(s)	727
BsuI	GTATCC	1 cut(s)	440
BsuRI	GGCC	4 cut(s)	342, 502, 725, 821
BsuTUI	ATCGAT	1 cut(s)	513
BtsCI	GGATG	1 cut(s)	237
BveI	ACCTGC	1 cut(s)	634
Cac8I	GCNNGC	3 cut(s)	159, 427, 695
CaiI	CAGNNNCTG	1 cut(s)	578
CciI	TCATGA	1 cut(s)	685
CfoI	GCGC	1 cut(s)	722
Cfr13I	GGNCC	5 cut(s)	218, 317, 340, 787, 820
ClaI	ATCGAT	1 cut(s)	513
CsiI	ACCWGGT	2 cut(s)	396, 577
Csp6I	GTAC	1 cut(s)	575
CviAII	CATG	4 cut(s)	76, 544, 631, 686
CviQI	GTAC	1 cut(s)	575
DdeI	CTNAG	3 cut(s)	571, 727, 771
DpnI	GATC	5 cut(s)	236, 495, 622, 733, 801
DpnII	GATC	5 cut(s)	234, 493, 620, 731, 799
DraI	TTTAAA	1 cut(s)	16
DriI	GACNNNNNGTC	1 cut(s)	793
Eam1104I	CTCTTC	1 cut(s)	805
Eam1105I	GACNNNNNGTC	1 cut(s)	793
EarI	CTCTTC	1 cut(s)	805
Ecl136II	GAGCTC	1 cut(s)	521
Eco24I	GRGCYC	2 cut(s)	421, 523
Eco47I	GGWCC	3 cut(s)	218, 317, 787
Eco53kI	GAGCTC	1 cut(s)	521
Eco81I	CCTNAGG	1 cut(s)	727
Eco88I	CYCGRG	3 cut(s)	54, 260, 522
EcoICRI	GAGCTC	1 cut(s)	521
EcoO109I	RGGNCCY	2 cut(s)	340, 820
EcoRII	CCWGG	4 cut(s)	301, 396, 577, 844
EcoT38I	GRGCYC	2 cut(s)	421, 523
FaeI	CATG	4 cut(s)	79, 547, 634, 689
FaqI	GGGAC	2 cut(s)	150, 355
FatI	CATG	4 cut(s)	75, 543, 630, 685
Fnu4HI	GCNGC	2 cut(s)	147, 723
FokI	GGATG	1 cut(s)	244
FriOI	GRGCYC	2 cut(s)	421, 523
Fsp4HI	GCNGC	2 cut(s)	147, 723
FspBI	CTAG	3 cut(s)	42, 426, 455
GlaI	GCGC	1 cut(s)	721
GluI	GCNGC	2 cut(s)	147, 723
HaeIII	GGCC	4 cut(s)	342, 502, 725, 821
HapII	CCGG	3 cut(s)	36, 499, 603
HhaI	GCGC	1 cut(s)	722
Hin1II	CATG	4 cut(s)	79, 547, 634, 689
Hin6I	GCGC	1 cut(s)	720
HinP1I	GCGC	1 cut(s)	720
HinfI	GANTC	2 cut(s)	92, 645
HpaII	CCGG	3 cut(s)	36, 499, 603
HphI	GGTGA	4 cut(s)	547, 593, 615, 640
Hpy166II	GTNNAC	1 cut(s)	308
Hpy188I	TCNGA	1 cut(s)	799
Hpy188III	TCNNGA	5 cut(s)	56, 244, 539, 686, 729
Hpy8I	GTNNAC	1 cut(s)	308
HpyCH4III	ACNGT	2 cut(s)	256, 369
HpyCH4V	TGCA	7 cut(s)	161, 347, 365, 414, 674, 697, 805
HpyF10VI	GCNNNNNNNGC	1 cut(s)	719
HpyF3I	CTNAG	3 cut(s)	571, 727, 771
Hsp92II	CATG	4 cut(s)	79, 547, 634, 689
HspAI	GCGC	1 cut(s)	720
Kzo9I	GATC	5 cut(s)	234, 493, 620, 731, 799
LmnI	GCTCC	2 cut(s)	518, 744
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	1 cut(s)	700
MabI	ACCWGGT	2 cut(s)	396, 577
MaeI	CTAG	3 cut(s)	42, 426, 455
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	5 cut(s)	236, 495, 622, 733, 801
MboI	GATC	5 cut(s)	234, 493, 620, 731, 799
MboII	GAAGA	3 cut(s)	94, 232, 822
MfeI	CAATTG	1 cut(s)	705
MflI	RGATCY	2 cut(s)	493, 799
MhlI	GDGCHC	3 cut(s)	421, 523, 603
MluCI	AATT	4 cut(s)	409, 534, 659, 705
MseI	TTAA	5 cut(s)	15, 212, 381, 434, 561
MslI	CAYNNNNRTG	1 cut(s)	132
MspI	CCGG	3 cut(s)	36, 499, 603
MspR9I	CCNGG	6 cut(s)	37, 303, 398, 579, 603, 846
MunI	CAATTG	1 cut(s)	705
Mva1269I	GAATGC	1 cut(s)	609
MvaI	CCWGG	4 cut(s)	303, 398, 579, 846
MvnI	CGCG	2 cut(s)	720, 722
MwoI	GCNNNNNNNGC	1 cut(s)	719
NciI	CCSGG	2 cut(s)	37, 603
NdeII	GATC	5 cut(s)	234, 493, 620, 731, 799
NheI	GCTAGC	1 cut(s)	425
NlaIII	CATG	4 cut(s)	79, 547, 634, 689
NlaIV	GGNNCC	1 cut(s)	341
NmuCI	GTSAC	1 cut(s)	187
OliI	CACNNNNGTG	1 cut(s)	132
PaeR7I	CTCGAG	2 cut(s)	54, 522
PagI	TCATGA	1 cut(s)	685
PaqCI	CACCTGC	1 cut(s)	634
PctI	GAATGC	1 cut(s)	609
PfeI	GAWTC	2 cut(s)	92, 645
PflMI	CCANNNNNTGG	2 cut(s)	227, 845
PkrI	GCNGC	2 cut(s)	148, 724
Psp124BI	GAGCTC	1 cut(s)	523
Psp6I	CCWGG	4 cut(s)	301, 396, 577, 844
PspGI	CCWGG	4 cut(s)	301, 396, 577, 844
PspN4I	GGNNCC	1 cut(s)	341
PspPI	GGNCC	5 cut(s)	218, 317, 340, 787, 820
PspXI	VCTCGAGB	1 cut(s)	522
PstI	CTGCAG	1 cut(s)	807
PstNI	CAGNNNCTG	1 cut(s)	578
PsuI	RGATCY	2 cut(s)	493, 799
RsaI	GTAC	1 cut(s)	576
RsaNI	GTAC	1 cut(s)	575
RseI	CAYNNNNRTG	1 cut(s)	132
SacI	GAGCTC	1 cut(s)	523
SaqAI	TTAA	5 cut(s)	15, 212, 381, 434, 561
SatI	GCNGC	2 cut(s)	147, 723
Sau3AI	GATC	5 cut(s)	234, 493, 620, 731, 799
Sau96I	GGNCC	5 cut(s)	218, 317, 340, 787, 820
ScrFI	CCNGG	6 cut(s)	37, 303, 398, 579, 603, 846
SduI	GDGCHC	3 cut(s)	421, 523, 603
SexAI	ACCWGGT	2 cut(s)	396, 577
SfaNI	GCATC	1 cut(s)	700
SfcI	CTRYAG	2 cut(s)	594, 803
Sfr274I	CTCGAG	2 cut(s)	54, 522
SinI	GGWCC	3 cut(s)	218, 317, 787
SlaI	CTCGAG	2 cut(s)	54, 522
SmiMI	CAYNNNNRTG	1 cut(s)	132
SmlI	CTYRAG	2 cut(s)	54, 522
SmoI	CTYRAG	2 cut(s)	54, 522
SpeI	ACTAGT	1 cut(s)	454
Sse9I	AATT	4 cut(s)	409, 534, 659, 705
SsiI	CCGC	2 cut(s)	89, 722
SspMI	CTAG	3 cut(s)	42, 426, 455
SstI	GAGCTC	1 cut(s)	523
StyD4I	CCNGG	6 cut(s)	35, 301, 396, 577, 601, 844
TaaI	ACNGT	2 cut(s)	256, 369
TaqI	TCGA	3 cut(s)	55, 513, 523
TaqII	GACCGA	2 cut(s)	24, 804
TasI	AATT	4 cut(s)	409, 534, 659, 705
TauI	GCSGC	1 cut(s)	725
TfiI	GAWTC	2 cut(s)	92, 645
Tru1I	TTAA	5 cut(s)	15, 212, 381, 434, 561
Tru9I	TTAA	5 cut(s)	15, 212, 381, 434, 561
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	2 cut(s)	674, 767
Van91I	CCANNNNNTGG	2 cut(s)	227, 845
VpaK11BI	GGWCC	3 cut(s)	218, 317, 787
XapI	RAATTY	2 cut(s)	534, 659
XhoI	CTCGAG	2 cut(s)	54, 522
XspI	CTAG	3 cut(s)	42, 426, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.