Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00000234

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

35538 .. 37115

Gene Structure 1578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGCAGCGGTCGATCCGGATAACCCGTATGGTTTTCTCTGACCATCCCTACTCTCCCACTTCTGAAATCCATGACTCATACCTCTACCCTTCGCTCTCTTTCCATCGTCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTCAGCTCTTTGTCAGAGTCTCCATCCCCCCGAAACCCTCATTGAAGGACACACCCATACCTCTCCCCTGCGCTGTCTTCCCCTCGGCATCTCTCTCTCTCTGTCTCTCTCTCTCTCTCTCTGTTTCTTCCGCTCTCAGTGAGAGCTTCAATTCCCCGAAACCATCAGTGAAGGACAGCAAATGCAACCCTACACGGCAACCCCTTAATTCACTCAAAACCGAGAGGACAAAATTGCCCTTCCAACCTAGTCCACATATAATGGGTTTCTTCGGTCGTATGGAAGAGCAACCCGAGGGAAATCTTTCCGGTTTGCCAAAGAGAGAGGATGTTGTTGTAGTAGTTCTAGATGATCGTGAGAGTATAATACAGGCAGCCAGGGAACGATTTCTTGCTCGTAAAGTAAGAAACGAGCTTATTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

AAA_22 DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

195

Amino Acids

21.76

Weight (kDa)

9.47

Isoelectric Point (pI)

51.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	293
AccIII	TCCGGA	1 cut(s)	15
AciI	CCGC	2 cut(s)	7, 291
AclWI	GGATC	1 cut(s)	7
AcuI	CTGAAG	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	205, 310
AjnI	CCWGG	1 cut(s)	536
AluBI	AGCT	3 cut(s)	166, 306, 574
AluI	AGCT	3 cut(s)	166, 306, 574
Alw26I	GTCTC	2 cut(s)	184, 269
AlwI	GGATC	1 cut(s)	7
Ama87I	CYCGRG	1 cut(s)	452
Aor13HI	TCCGGA	1 cut(s)	15
ApeKI	GCWGC	2 cut(s)	4, 533
Asp700I	GAANNNNTTC	2 cut(s)	463, 546
AspLEI	GCGC	1 cut(s)	233
AvaI	CYCGRG	1 cut(s)	452
BbsI	GAAGAC	1 cut(s)	229
BbvI	GCAGC	2 cut(s)	16, 545
BccI	CCATC	4 cut(s)	51, 111, 191, 331
BceAI	ACGGC	1 cut(s)	371
BciT130I	CCWGG	1 cut(s)	538
BcoDI	GTCTC	2 cut(s)	184, 269
BfaI	CTAG	2 cut(s)	408, 506
BisI	GCNGC	2 cut(s)	5, 534
BlsI	GCNGC	2 cut(s)	6, 535
Bme1390I	CCNGG	1 cut(s)	538
BmeT110I	CYCGRG	1 cut(s)	452
BmrFI	CCNGG	1 cut(s)	538
BmsI	GCATC	1 cut(s)	257
BpiI	GAAGAC	1 cut(s)	229
BsaJI	CCNNGG	3 cut(s)	243, 453, 537
BsaWI	WCCGGW	2 cut(s)	15, 467
BseAI	TCCGGA	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	538
BseDI	CCNNGG	3 cut(s)	243, 453, 537
BseGI	GGATG	3 cut(s)	43, 183, 493
BseMII	CTCAG	1 cut(s)	310
BseXI	GCAGC	2 cut(s)	16, 545
Bsh1285I	CGRYCG	2 cut(s)	11, 436
BsiEI	CGRYCG	2 cut(s)	11, 436
BsiHKCI	CYCGRG	1 cut(s)	452
BsiSI	CCGG	2 cut(s)	16, 468
BsmAI	GTCTC	2 cut(s)	184, 269
BsoBI	CYCGRG	1 cut(s)	452
Bsp13I	TCCGGA	1 cut(s)	15
Bsp143I	GATC	2 cut(s)	12, 511
BspACI	CCGC	2 cut(s)	7, 291
BspCNI	CTCAG	1 cut(s)	309
BspEI	TCCGGA	1 cut(s)	15
BspPI	GGATC	1 cut(s)	7
BspQI	GCTCTTC	1 cut(s)	438
BsrBI	CCGCTC	1 cut(s)	293
BssECI	CCNNGG	3 cut(s)	243, 453, 537
BssMI	GATC	2 cut(s)	12, 511
Bst2UI	CCWGG	1 cut(s)	538
Bst6I	CTCTTC	1 cut(s)	438
BstDEI	CTNAG	1 cut(s)	296
BstF5I	GGATG	3 cut(s)	43, 183, 493
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	2 cut(s)	15, 514
BstMAI	GTCTC	2 cut(s)	184, 269
BstMBI	GATC	2 cut(s)	12, 511
BstMCI	CGRYCG	2 cut(s)	11, 436
BstNI	CCWGG	1 cut(s)	538
BstSCI	CCNGG	1 cut(s)	536
BstV1I	GCAGC	2 cut(s)	16, 545
BstV2I	GAAGAC	1 cut(s)	229
BtsCI	GGATG	3 cut(s)	43, 183, 493
BtsIMutI	CAGTG	2 cut(s)	304, 333
CfoI	GCGC	1 cut(s)	233
CviAII	CATG	1 cut(s)	71
CviJI	RGCY	4 cut(s)	166, 306, 536, 574
CviKI_1	RGCY	4 cut(s)	166, 306, 536, 574
DdeI	CTNAG	1 cut(s)	296
DpnI	GATC	2 cut(s)	14, 513
DpnII	GATC	2 cut(s)	12, 511
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Eco57I	CTGAAG	1 cut(s)	146
Eco88I	CYCGRG	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	536
FaeI	CATG	1 cut(s)	74
FaiI	YATR	8 cut(s)	29, 72, 79, 218, 417, 419, 440, 524
FatI	CATG	1 cut(s)	70
Fnu4HI	GCNGC	2 cut(s)	5, 534
FokI	GGATG	3 cut(s)	30, 170, 500
Fsp4HI	GCNGC	2 cut(s)	5, 534
FspBI	CTAG	2 cut(s)	408, 506
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	2 cut(s)	5, 534
HapII	CCGG	2 cut(s)	16, 468
HhaI	GCGC	1 cut(s)	233
Hin1II	CATG	1 cut(s)	74
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HinfI	GANTC	2 cut(s)	74, 177
HpaII	CCGG	2 cut(s)	16, 468
Hpy166II	GTNNAC	1 cut(s)	413
Hpy188I	TCNGA	3 cut(s)	40, 64, 176
Hpy188III	TCNNGA	3 cut(s)	16, 506, 515
Hpy8I	GTNNAC	1 cut(s)	413
HpyAV	CCTTC	4 cut(s)	99, 199, 325, 409
HpyCH4V	TGCA	2 cut(s)	4, 345
HpyF3I	CTNAG	1 cut(s)	296
Hsp92II	CATG	1 cut(s)	74
HspAI	GCGC	1 cut(s)	231
Kpn2I	TCCGGA	1 cut(s)	15
Kzo9I	GATC	2 cut(s)	12, 511
LguI	GCTCTTC	1 cut(s)	438
LpnPI	CCDG	6 cut(s)	29, 241, 481, 515, 523, 550
Lsp1109I	GCAGC	2 cut(s)	16, 545
LweI	GCATC	1 cut(s)	257
MaeI	CTAG	2 cut(s)	408, 506
MalI	GATC	2 cut(s)	14, 513
MbiI	CCGCTC	1 cut(s)	293
MboI	GATC	2 cut(s)	12, 511
MboII	GAAGA	5 cut(s)	152, 229, 279, 421, 455
MluCI	AATT	3 cut(s)	310, 367, 392
MlyI	GAGTC	2 cut(s)	68, 186
MmeI	TCCRAC	1 cut(s)	427
MnlI	CCTC	7 cut(s)	92, 208, 231, 253, 378, 448, 478
MroI	TCCGGA	1 cut(s)	15
MroXI	GAANNNNTTC	2 cut(s)	463, 546
MseI	TTAA	1 cut(s)	366
MspA1I	CMGCKG	1 cut(s)	7
MspI	CCGG	2 cut(s)	16, 468
MspR9I	CCNGG	1 cut(s)	538
MvaI	CCWGG	1 cut(s)	538
NdeII	GATC	2 cut(s)	12, 511
NlaIII	CATG	1 cut(s)	74
NmeAIII	GCCGAG	1 cut(s)	224
PciSI	GCTCTTC	1 cut(s)	438
PdmI	GAANNNNTTC	2 cut(s)	463, 546
PkrI	GCNGC	2 cut(s)	6, 535
PleI	GAGTC	2 cut(s)	68, 185
PpsI	GAGTC	2 cut(s)	68, 185
Psp6I	CCWGG	1 cut(s)	536
PspGI	CCWGG	1 cut(s)	536
SapI	GCTCTTC	1 cut(s)	438
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	2 cut(s)	5, 534
Sau3AI	GATC	2 cut(s)	12, 511
SchI	GAGTC	2 cut(s)	68, 186
ScrFI	CCNGG	1 cut(s)	538
SetI	ASST	6 cut(s)	84, 168, 223, 308, 409, 576
SfaNI	GCATC	1 cut(s)	257
Sse9I	AATT	3 cut(s)	310, 367, 392
SsiI	CCGC	2 cut(s)	7, 291
SspMI	CTAG	2 cut(s)	408, 506
StyD4I	CCNGG	1 cut(s)	536
TaqI	TCGA	1 cut(s)	11
TaqII	GACCGA	1 cut(s)	422
TasI	AATT	3 cut(s)	310, 367, 392
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	2 cut(s)	304, 333
TseI	GCWGC	2 cut(s)	4, 533
TspRI	CASTG	2 cut(s)	304, 333
XbaI	TCTAGA	1 cut(s)	505
XmnI	GAANNNNTTC	2 cut(s)	463, 546
XspI	CTAG	2 cut(s)	408, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.