Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00002749

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

72479 .. 75882

Gene Structure 3404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCCATTGTCAAGGGGGGTCTTACAGCTACAGATGTTTTTGCTGTGGAGTGGGTTCAGACTGGCGTTATTCACTTTGGGATGACAGTCTCGTATTATGGTTTTGTGAGTGATGTGTTGGAGCTCTCTGAGAAATACCAAAAGCGCTTTGGTCCTCTTCGTTATTTTGTTGCTGGATTTCTCAAATTCTTGTGCCTACCAAAGTACAGCTATGAAGTTGAGTATCTTCCAGCATTAAAAGAGGACATAGAAGGAAAACTCTCAGAAAGGGAAGTAGTTGACATGTCAGAACTATACACAGACATTATGAGAGATCAAACACAGATGGGATTCCAAGAGCCTCTAGTTTGTCAAGTATTGACTCCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006643 GO:0006665 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0017050 GO:0030148 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046467 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAGK_cat

Protein Analysis

124

Amino Acids

14.07

Weight (kDa)

4.71

Isoelectric Point (pI)

28.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	185
AfaI	GTAC	1 cut(s)	206
AfeI	AGCGCT	1 cut(s)	146
AflIII	ACRYGT	1 cut(s)	282
AluBI	AGCT	3 cut(s)	29, 124, 210
AluI	AGCT	3 cut(s)	29, 124, 210
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	1 cut(s)	94
Aor51HI	AGCGCT	1 cut(s)	146
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	185
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	152
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	126
BccI	CCATC	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	1 cut(s)	344
BfmI	CTRYAG	1 cut(s)	30
BfoI	RGCGCY	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	67
BseGI	GGATG	1 cut(s)	87
BseMII	CTCAG	2 cut(s)	120, 276
BseNI	ACTGG	1 cut(s)	67
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	126
BsmAI	GTCTC	1 cut(s)	94
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	313
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	121, 275
BsrI	ACTGG	1 cut(s)	67
BssMI	GATC	1 cut(s)	313
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	162
BstDEI	CTNAG	2 cut(s)	129, 262
BstF5I	GGATG	1 cut(s)	87
BstH2I	RGCGCY	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	1 cut(s)	316
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	313
BstNSI	RCATGY	1 cut(s)	286
BstSFI	CTRYAG	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	87
CfoI	GCGC	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	1 cut(s)	283
CviJI	RGCY	5 cut(s)	5, 29, 124, 210, 340
CviKI_1	RGCY	5 cut(s)	5, 29, 124, 210, 340
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	2 cut(s)	129, 262
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Ecl136II	GAGCTC	1 cut(s)	124
Eco24I	GRGCYC	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	152
Eco47III	AGCGCT	1 cut(s)	146
Eco53kI	GAGCTC	1 cut(s)	124
EcoICRI	GAGCTC	1 cut(s)	124
EcoT38I	GRGCYC	1 cut(s)	126
FaeI	CATG	1 cut(s)	286
FaiI	YATR	7 cut(s)	99, 213, 248, 284, 295, 308, 370
FatI	CATG	1 cut(s)	282
FokI	GGATG	1 cut(s)	94
FriOI	GRGCYC	1 cut(s)	126
FspBI	CTAG	1 cut(s)	344
GlaI	GCGC	1 cut(s)	146
HaeII	RGCGCY	1 cut(s)	148
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	147
Hin1II	CATG	1 cut(s)	286
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	2 cut(s)	330, 361
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	4 cut(s)	60, 130, 265, 289
Hpy8I	GTNNAC	1 cut(s)	280
HpyAV	CCTTC	1 cut(s)	245
HpyCH4III	ACNGT	1 cut(s)	88
HpyF3I	CTNAG	2 cut(s)	129, 262
Hsp92II	CATG	1 cut(s)	286
HspAI	GCGC	1 cut(s)	145
Kzo9I	GATC	1 cut(s)	313
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	3 cut(s)	48, 159, 243
MaeI	CTAG	1 cut(s)	344
MalI	GATC	1 cut(s)	315
MboI	GATC	1 cut(s)	313
MboII	GAAGA	2 cut(s)	149, 218
MhlI	GDGCHC	1 cut(s)	126
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	185
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	355
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	3 cut(s)	165, 235, 351
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	236
Msp20I	TGGCCA	1 cut(s)	5
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	1 cut(s)	286
NspI	RCATGY	1 cut(s)	286
PciI	ACATGT	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	330
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
PscI	ACATGT	1 cut(s)	282
Psp124BI	GAGCTC	1 cut(s)	126
PspPI	GGNCC	1 cut(s)	152
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SacI	GAGCTC	1 cut(s)	126
SaqAI	TTAA	1 cut(s)	236
Sau3AI	GATC	1 cut(s)	313
Sau96I	GGNCC	1 cut(s)	152
SchI	GAGTC	1 cut(s)	355
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	3 cut(s)	31, 126, 212
SfcI	CTRYAG	1 cut(s)	30
SinI	GGWCC	1 cut(s)	152
Sse9I	AATT	1 cut(s)	185
SspMI	CTAG	1 cut(s)	344
SstI	GAGCTC	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	88
TasI	AATT	1 cut(s)	185
TatI	WGTACW	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	330
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TspDTI	ATGAA	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	152
XapI	RAATTY	1 cut(s)	185
XceI	RCATGY	1 cut(s)	286
XcmI	CCANNNNNNNNNTGG	1 cut(s)	146
XspI	CTAG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.