pycom2874g00030

snRNP Sm proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00002874
N/A
Physical Location & Seq
Forward (+)
22222 .. 22946
725 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 393 bp
ATGTCTCCTGGCTCCAACTTTAAAAATTTCTTGGTGTTTTTTATGGATTTTGTTTCCTTTAGATGGGTGTTACTGATTCTGAAATCTCTCTCTCTTGCAGTTAAACTTGTTCATTACAAGTCTTGCACAGAAAACTCAGAAATATGTCGAGTGGCCCTGGTCTTGAGTCACTTGTTGATCGGAGTCTTGAAAGGCTTTGACCAGTCTACTAATATCATTCTCGATGAATCTCATGAACGTGTTTTCTCTACAAAGGTTTGCATCTTCACTGTTACGAGCTTCCCCTTTCTAGCGTCATCTTTGTTTACTCTTTTTTGTAATTGGACAGAAGGAAAGGGATGTGGAATCTACTTTCTGGCAGGCGGAAGTATTTCTGATTTTTCCCAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 ko03040 map03018 map03040
Pfam Domains
Protein Families
LSM

Protein Analysis

131

Amino Acids

14.6

Weight (kDa)

7.65

Isoelectric Point (pI)

39.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 51 - 85 4.5e-06 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 206
AciI CCGC 1 cut(s) 363
AcsI RAATTY 1 cut(s) 25
AfiI CCNNNNNNNGG 1 cut(s) 63
AflIII ACRYGT 1 cut(s) 238
AgsI TTSAA 1 cut(s) 190
AjnI CCWGG 2 cut(s) 7, 156
AluBI AGCT 1 cut(s) 279
AluI AGCT 1 cut(s) 279
Alw26I GTCTC 1 cut(s) 9
AoxI GGCC 1 cut(s) 153
ApoI RAATTY 1 cut(s) 25
Asp700I GAANNNNTTC 1 cut(s) 370
AspS9I GGNCC 1 cut(s) 154
BccI CCATC 1 cut(s) 57
BciT130I CCWGG 2 cut(s) 9, 158
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 290
Bme1390I CCNGG 2 cut(s) 9, 158
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 13
BmrFI CCNGG 2 cut(s) 9, 158
BmsI GCATC 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 184
BsaJI CCNNGG 1 cut(s) 156
Bsc4I CCNNNNNNNGG 1 cut(s) 63
Bse1I ACTGG 1 cut(s) 202
BseBI CCWGG 2 cut(s) 9, 158
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 1 cut(s) 344
BseLI CCNNNNNNNGG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 202
BshFI GGCC 1 cut(s) 155
BslI CCNNNNNNNGG 1 cut(s) 63
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 1 cut(s) 155
Bsp143I GATC 1 cut(s) 177
BspACI CCGC 1 cut(s) 363
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 1 cut(s) 149
BspHI TCATGA 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 13
BsrI ACTGG 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 1 cut(s) 177
Bst2UI CCWGG 2 cut(s) 9, 158
Bst4CI ACNGT 1 cut(s) 271
BstC8I GCNNGC 1 cut(s) 361
BstDEI CTNAG 1 cut(s) 136
BstF5I GGATG 1 cut(s) 344
BstKTI GATC 1 cut(s) 180
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 177
BstNI CCWGG 2 cut(s) 9, 158
BstSCI CCNGG 2 cut(s) 7, 156
BsuRI GGCC 1 cut(s) 155
BtsCI GGATG 1 cut(s) 344
BtsIMutI CAGTG 1 cut(s) 267
Cac8I GCNNGC 1 cut(s) 361
CciI TCATGA 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 154
CseI GACGC 1 cut(s) 282
CviAII CATG 1 cut(s) 233
CviJI RGCY 4 cut(s) 12, 155, 195, 279
CviKI_1 RGCY 4 cut(s) 12, 155, 195, 279
DdeI CTNAG 1 cut(s) 136
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
DraI TTTAAA 1 cut(s) 22
EciI GGCGGA 1 cut(s) 378
EcoRII CCWGG 2 cut(s) 7, 156
FaeI CATG 1 cut(s) 236
FaiI YATR 3 cut(s) 44, 145, 234
FatI CATG 1 cut(s) 232
FblI GTMKAC 1 cut(s) 206
FokI GGATG 1 cut(s) 351
FspBI CTAG 1 cut(s) 290
HaeIII GGCC 1 cut(s) 155
HgaI GACGC 1 cut(s) 282
Hin1II CATG 1 cut(s) 236
HinfI GANTC 5 cut(s) 76, 166, 183, 227, 345
Hpy166II GTNNAC 2 cut(s) 207, 306
Hpy188I TCNGA 4 cut(s) 81, 139, 182, 376
Hpy188III TCNNGA 4 cut(s) 163, 187, 221, 233
Hpy8I GTNNAC 2 cut(s) 207, 306
HpyAV CCTTC 1 cut(s) 323
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4IV ACGT 1 cut(s) 238
HpyCH4V TGCA 3 cut(s) 98, 126, 261
HpyF3I CTNAG 1 cut(s) 136
HpySE526I ACGT 1 cut(s) 238
Hsp92II CATG 1 cut(s) 236
Kzo9I GATC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 17
LpnPI CCDG 6 cut(s) 21, 143, 170, 215, 341, 345
LweI GCATC 1 cut(s) 270
MaeI CTAG 1 cut(s) 290
MaeII ACGT 1 cut(s) 238
MaeIII GTNAC 3 cut(s) 69, 167, 271
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 1 cut(s) 256
MluCI AATT 3 cut(s) 25, 319, 386
MlyI GAGTC 2 cut(s) 175, 192
MmeI TCCRAC 1 cut(s) 39
MroXI GAANNNNTTC 1 cut(s) 370
MseI TTAA 2 cut(s) 21, 102
MslI CAYNNNNRTG 1 cut(s) 237
MspR9I CCNGG 2 cut(s) 9, 158
MvaI CCWGG 2 cut(s) 9, 158
NdeII GATC 1 cut(s) 177
NlaIII CATG 1 cut(s) 236
NlaIV GGNNCC 1 cut(s) 13
NmuCI GTSAC 1 cut(s) 167
PagI TCATGA 1 cut(s) 232
PdmI GAANNNNTTC 1 cut(s) 370
PfeI GAWTC 3 cut(s) 76, 227, 345
PleI GAGTC 2 cut(s) 174, 191
PpsI GAGTC 2 cut(s) 174, 191
Psp6I CCWGG 2 cut(s) 7, 156
PspGI CCWGG 2 cut(s) 7, 156
PspN4I GGNNCC 1 cut(s) 13
PspPI GGNCC 1 cut(s) 154
RseI CAYNNNNRTG 1 cut(s) 237
SaqAI TTAA 2 cut(s) 21, 102
Sau3AI GATC 1 cut(s) 177
Sau96I GGNCC 1 cut(s) 154
SchI GAGTC 2 cut(s) 175, 192
ScrFI CCNGG 2 cut(s) 9, 158
SetI ASST 3 cut(s) 241, 258, 281
SfaNI GCATC 1 cut(s) 270
SmiMI CAYNNNNRTG 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 163
SmoI CTYRAG 1 cut(s) 163
Sse9I AATT 3 cut(s) 25, 319, 386
SsiI CCGC 1 cut(s) 363
SspMI CTAG 1 cut(s) 290
StyD4I CCNGG 2 cut(s) 7, 156
TaaI ACNGT 1 cut(s) 271
TaiI ACGT 1 cut(s) 241
TaqI TCGA 2 cut(s) 148, 222
TasI AATT 3 cut(s) 25, 319, 386
TfiI GAWTC 3 cut(s) 76, 227, 345
Tru1I TTAA 2 cut(s) 21, 102
Tru9I TTAA 2 cut(s) 21, 102
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 1 cut(s) 167
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 3 cut(s) 101, 240, 249
TspRI CASTG 1 cut(s) 274
XapI RAATTY 1 cut(s) 25
XmiI GTMKAC 1 cut(s) 206
XmnI GAANNNNTTC 1 cut(s) 370
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.