pycom290g00030

Protein of unknown function (DUF2996)

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_290
N/A
Physical Location & Seq
Forward (+)
33769 .. 34862
1094 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 468 bp
ATGAGGGTAAGGCCCAAAAGGCCGAACGTCCAAAATAAGCAGCGAATTTGGAAGTCGAGATTCGTTAGAGAGCGAGATGAGGGAAAATGGAAGAGCTTCAATCTCAGCCATTCGTTAAATGATAGATGGTTTTATTTCAGTGGCTTGCTTTTGCGAATGAAGCTCCAAATTAACCACCAAGCAAGCATGGCTTCGGCTATTCTTTCTCTGGCCAAACCATCTCCTCTACAGCCAAATGGAAAACATTTTGCAGAATTCTCAGCTCTCCCGAAGCCATCAGCCAGCCTGCCTTTTGGCAGAAAGACCTCAAATGATCAAATGATGAAAAGTAAAGTGGTAGCATCTCAAAGAAATATTGCGTGCTTTGCTTTGCAAGAATCATCTACTTCCACTGCTGATGCTGCTGATACAAGTACAAAGGAGGTTAAAACAGCTCGATCAAAAAGCAGCAGCTCCAGCAAAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

156

Amino Acids

17.43

Weight (kDa)

10.91

Isoelectric Point (pI)

55.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 210
AcsI RAATTY 2 cut(s) 45, 254
AfaI GTAC 1 cut(s) 415
AgsI TTSAA 1 cut(s) 100
AluBI AGCT 5 cut(s) 96, 163, 263, 434, 453
AluI AGCT 5 cut(s) 96, 163, 263, 434, 453
AoxI GGCC 3 cut(s) 11, 20, 210
ApeKI GCWGC 4 cut(s) 40, 401, 447, 450
ApoI RAATTY 2 cut(s) 45, 254
Asp700I GAANNNNTTC 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 12
BalI TGGCCA 1 cut(s) 212
BbvI GCAGC 4 cut(s) 52, 388, 459, 462
BccI CCATC 3 cut(s) 120, 226, 283
BclI TGATCA 1 cut(s) 313
BfmI CTRYAG 1 cut(s) 227
BglI GCCNNNNNGGC 1 cut(s) 19
BisI GCNGC 4 cut(s) 41, 402, 448, 451
BlsI GCNGC 4 cut(s) 42, 403, 449, 452
BmgT120I GGNCC 1 cut(s) 12
BmsI GCATC 2 cut(s) 350, 388
BpmI CTGGAG 1 cut(s) 439
BseMII CTCAG 2 cut(s) 118, 273
BseRI GAGGAG 1 cut(s) 213
BseXI GCAGC 4 cut(s) 52, 388, 459, 462
BshFI GGCC 3 cut(s) 13, 22, 212
BsnI GGCC 3 cut(s) 13, 22, 212
Bsp143I GATC 2 cut(s) 313, 437
BspANI GGCC 3 cut(s) 13, 22, 212
BspCNI CTCAG 2 cut(s) 117, 272
BspQI GCTCTTC 1 cut(s) 86
BssMI GATC 2 cut(s) 313, 437
Bst6I CTCTTC 1 cut(s) 86
BstC8I GCNNGC 5 cut(s) 146, 184, 283, 287, 361
BstDEI CTNAG 2 cut(s) 104, 259
BstKTI GATC 2 cut(s) 316, 440
BstMBI GATC 2 cut(s) 313, 437
BstMWI GCNNNNNNNGC 6 cut(s) 19, 160, 188, 365, 401, 456
BstSFI CTRYAG 1 cut(s) 227
BstV1I GCAGC 4 cut(s) 52, 388, 459, 462
BsuRI GGCC 3 cut(s) 13, 22, 212
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 2 cut(s) 145, 390
Cac8I GCNNGC 5 cut(s) 146, 184, 283, 287, 361
Cfr13I GGNCC 1 cut(s) 12
Csp6I GTAC 1 cut(s) 414
CviAII CATG 1 cut(s) 187
CviQI GTAC 1 cut(s) 414
DdeI CTNAG 2 cut(s) 104, 259
DpnI GATC 2 cut(s) 315, 439
DpnII GATC 2 cut(s) 313, 437
EaeI YGGCCR 1 cut(s) 210
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
EcoRI GAATTC 1 cut(s) 254
FaeI CATG 1 cut(s) 190
FaiI YATR 1 cut(s) 188
FalI AAGNNNNNCTT 2 cut(s) 175, 207
FatI CATG 1 cut(s) 186
FbaI TGATCA 1 cut(s) 313
Fnu4HI GCNGC 4 cut(s) 41, 402, 448, 451
Fsp4HI GCNGC 4 cut(s) 41, 402, 448, 451
GluI GCNGC 4 cut(s) 41, 402, 448, 451
GsuI CTGGAG 1 cut(s) 439
HaeIII GGCC 3 cut(s) 13, 22, 212
Hin1II CATG 1 cut(s) 190
HinfI GANTC 2 cut(s) 60, 377
Hpy188III TCNNGA 2 cut(s) 57, 268
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 2 cut(s) 251, 373
HpyF10VI GCNNNNNNNGC 6 cut(s) 19, 160, 188, 365, 401, 456
HpyF3I CTNAG 2 cut(s) 104, 259
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 1 cut(s) 190
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 2 cut(s) 313, 437
LguI GCTCTTC 1 cut(s) 86
LmnI GCTCC 2 cut(s) 168, 458
LpnPI CCDG 3 cut(s) 194, 295, 299
Lsp1109I GCAGC 4 cut(s) 52, 388, 459, 462
LweI GCATC 2 cut(s) 350, 388
MaeII ACGT 1 cut(s) 27
MalI GATC 2 cut(s) 315, 439
MboI GATC 2 cut(s) 313, 437
MboII GAAGA 1 cut(s) 103
MlsI TGGCCA 1 cut(s) 212
MluCI AATT 3 cut(s) 45, 168, 254
MluNI TGGCCA 1 cut(s) 212
MnlI CCTC 4 cut(s) 73, 234, 316, 415
Mox20I TGGCCA 1 cut(s) 212
MroXI GAANNNNTTC 1 cut(s) 95
MscI TGGCCA 1 cut(s) 212
MseI TTAA 3 cut(s) 116, 171, 426
Msp20I TGGCCA 1 cut(s) 212
MwoI GCNNNNNNNGC 6 cut(s) 19, 160, 188, 365, 401, 456
NdeII GATC 2 cut(s) 313, 437
NlaIII CATG 1 cut(s) 190
PciSI GCTCTTC 1 cut(s) 86
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 2 cut(s) 60, 377
PkrI GCNGC 4 cut(s) 42, 403, 449, 452
PspPI GGNCC 1 cut(s) 12
RsaI GTAC 1 cut(s) 415
RsaNI GTAC 1 cut(s) 414
SapI GCTCTTC 1 cut(s) 86
SaqAI TTAA 3 cut(s) 116, 171, 426
SatI GCNGC 4 cut(s) 41, 402, 448, 451
Sau3AI GATC 2 cut(s) 313, 437
Sau96I GGNCC 1 cut(s) 12
SetI ASST 8 cut(s) 30, 98, 165, 265, 308, 426, 436, 455
SfaNI GCATC 2 cut(s) 350, 388
SfcI CTRYAG 1 cut(s) 227
SfiI GGCCNNNNNGGCC 1 cut(s) 19
Sse9I AATT 3 cut(s) 45, 168, 254
SspI AATATT 1 cut(s) 355
TaiI ACGT 1 cut(s) 30
TaqI TCGA 2 cut(s) 56, 436
TasI AATT 3 cut(s) 45, 168, 254
TatI WGTACW 1 cut(s) 413
TfiI GAWTC 2 cut(s) 60, 377
Tru1I TTAA 3 cut(s) 116, 171, 426
Tru9I TTAA 3 cut(s) 116, 171, 426
TscAI CASTG 2 cut(s) 145, 397
TseI GCWGC 4 cut(s) 40, 401, 447, 450
TspDTI ATGAA 2 cut(s) 173, 338
TspRI CASTG 2 cut(s) 145, 397
XapI RAATTY 2 cut(s) 45, 254
XmnI GAANNNNTTC 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.