pycom420g00280

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_420
N/A
Physical Location & Seq
Reverse (-)
328562 .. 328933
372 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 372 bp
ATGTTGGAGGGCGGTGCCAAATTCACTGGAATTGTTGGTCTAAATAACCATGATATTAACTATGACAATTTGTCGCAAGGCTTCTACCTCAAACTCCATGAGGGTGAAGGTACCAACATGTCCATCGACAGTATGCAAACGAGCAACGATGGAGGCTCTGTAGCCATGTCTATAGACAACAGCAGTGTTGGTTCAAATACTAATGATTCACACACTCGCATCTTGAACCACCAAGGGCTGCGGCGACGTGCAAATGACAACTACTCTGTGCAACATAGTGTTAACCACCGAGGAAGAGTCACACATGCTCTGAGTAATGATCGAGCTTGCCCAAGCTCTACTGGACAGCCATTCCTTGACGGAGGGGCTTGA

Protein Analysis

124

Amino Acids

13.22

Weight (kDa)

6.11

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 110
AccB1I GGYRCC 2 cut(s) 14, 110
AciI CCGC 2 cut(s) 12, 241
AcsI RAATTY 1 cut(s) 20
AfaI GTAC 1 cut(s) 112
AflIII ACRYGT 1 cut(s) 117
AgsI TTSAA 2 cut(s) 195, 226
AhdI GACNNNNNGTC 1 cut(s) 70
AjiI CACGTC 1 cut(s) 248
AluBI AGCT 2 cut(s) 326, 336
AluI AGCT 2 cut(s) 326, 336
ApeKI GCWGC 1 cut(s) 238
ApoI RAATTY 1 cut(s) 20
Asp718I GGTACC 1 cut(s) 110
AsuHPI GGTGA 1 cut(s) 116
BanI GGYRCC 2 cut(s) 14, 110
BbvI GCAGC 1 cut(s) 225
BccI CCATC 2 cut(s) 131, 143
BfmI CTRYAG 2 cut(s) 159, 171
BisI GCNGC 2 cut(s) 239, 242
BlsI GCNGC 2 cut(s) 240, 243
BmeRI GACNNNNNGTC 1 cut(s) 70
BmgBI CACGTC 1 cut(s) 248
BmiI GGNNCC 2 cut(s) 16, 112
BmsI GCATC 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 232, 289
BsaXI ACNNNNNCTCC 2 cut(s) 144, 174
Bse1I ACTGG 2 cut(s) 31, 346
BseDI CCNNGG 2 cut(s) 232, 289
BseMII CTCAG 1 cut(s) 302
BseNI ACTGG 2 cut(s) 31, 346
BseXI GCAGC 1 cut(s) 225
BshNI GGYRCC 2 cut(s) 14, 110
Bsp143I GATC 1 cut(s) 319
BspACI CCGC 2 cut(s) 12, 241
BspCNI CTCAG 1 cut(s) 303
BspLI GGNNCC 2 cut(s) 16, 112
BspT107I GGYRCC 2 cut(s) 14, 110
BsrI ACTGG 2 cut(s) 31, 346
BssECI CCNNGG 2 cut(s) 232, 289
BssMI GATC 1 cut(s) 319
BssT1I CCWWGG 1 cut(s) 232
Bst4CI ACNGT 1 cut(s) 131
Bst6I CTCTTC 1 cut(s) 289
BstC8I GCNNGC 1 cut(s) 328
BstDEI CTNAG 1 cut(s) 311
BstKTI GATC 1 cut(s) 322
BstMBI GATC 1 cut(s) 319
BstNSI RCATGY 2 cut(s) 121, 308
BstSFI CTRYAG 2 cut(s) 159, 171
BstV1I GCAGC 1 cut(s) 225
BtrI CACGTC 1 cut(s) 248
BtsI GCAGTG 1 cut(s) 190
BtsIMutI CAGTG 2 cut(s) 24, 190
Cac8I GCNNGC 1 cut(s) 328
Csp6I GTAC 1 cut(s) 111
CviAII CATG 5 cut(s) 50, 98, 118, 166, 305
CviJI RGCY 8 cut(s) 81, 156, 164, 238, 326, 336, 349, 368
CviKI_1 RGCY 8 cut(s) 81, 156, 164, 238, 326, 336, 349, 368
CviQI GTAC 1 cut(s) 111
DdeI CTNAG 1 cut(s) 311
DpnI GATC 1 cut(s) 321
DpnII GATC 1 cut(s) 319
DriI GACNNNNNGTC 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 289
Eam1105I GACNNNNNGTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 232
FaeI CATG 5 cut(s) 53, 101, 121, 169, 308
FaiI YATR 9 cut(s) 51, 63, 99, 119, 134, 167, 173, 276, 306
FatI CATG 5 cut(s) 49, 97, 117, 165, 304
Fnu4HI GCNGC 2 cut(s) 239, 242
Fsp4HI GCNGC 2 cut(s) 239, 242
GluI GCNGC 2 cut(s) 239, 242
Hin1II CATG 5 cut(s) 53, 101, 121, 169, 308
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 2 cut(s) 206, 297
HpaI GTTAAC 1 cut(s) 283
HphI GGTGA 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 1 cut(s) 312
Hpy188III TCNNGA 1 cut(s) 223
Hpy8I GTNNAC 1 cut(s) 283
Hpy99I CGWCG 1 cut(s) 249
HpyAV CCTTC 1 cut(s) 101
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4IV ACGT 1 cut(s) 247
HpyCH4V TGCA 3 cut(s) 136, 251, 271
HpyF3I CTNAG 1 cut(s) 311
HpySE526I ACGT 1 cut(s) 247
Hsp92II CATG 5 cut(s) 53, 101, 121, 169, 308
KpnI GGTACC 1 cut(s) 114
KspAI GTTAAC 1 cut(s) 283
Kzo9I GATC 1 cut(s) 319
LpnPI CCDG 2 cut(s) 12, 327
Lsp1109I GCAGC 1 cut(s) 225
LweI GCATC 1 cut(s) 228
MaeII ACGT 1 cut(s) 247
MaeIII GTNAC 1 cut(s) 298
MalI GATC 1 cut(s) 321
MboI GATC 1 cut(s) 319
MboII GAAGA 1 cut(s) 306
MluCI AATT 3 cut(s) 20, 30, 67
MlyI GAGTC 1 cut(s) 306
MnlI CCTC 5 cut(s) 94, 98, 146, 284, 356
MseI TTAA 2 cut(s) 57, 282
MslI CAYNNNNRTG 1 cut(s) 102
NdeII GATC 1 cut(s) 319
NlaIII CATG 5 cut(s) 53, 101, 121, 169, 308
NlaIV GGNNCC 2 cut(s) 16, 112
NmuCI GTSAC 1 cut(s) 298
NspI RCATGY 2 cut(s) 121, 308
PciI ACATGT 1 cut(s) 117
PfeI GAWTC 1 cut(s) 206
PkrI GCNGC 2 cut(s) 240, 243
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
PscI ACATGT 1 cut(s) 117
PspN4I GGNNCC 2 cut(s) 16, 112
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
RseI CAYNNNNRTG 1 cut(s) 102
SaqAI TTAA 2 cut(s) 57, 282
SatI GCNGC 2 cut(s) 239, 242
Sau3AI GATC 1 cut(s) 319
SchI GAGTC 1 cut(s) 306
SetI ASST 5 cut(s) 90, 112, 250, 328, 338
SfaNI GCATC 1 cut(s) 228
SfcI CTRYAG 2 cut(s) 159, 171
SmiMI CAYNNNNRTG 1 cut(s) 102
Sse9I AATT 3 cut(s) 20, 30, 67
SsiI CCGC 2 cut(s) 12, 241
StyI CCWWGG 1 cut(s) 232
TaaI ACNGT 1 cut(s) 131
TaiI ACGT 1 cut(s) 250
TaqI TCGA 2 cut(s) 126, 322
TasI AATT 3 cut(s) 20, 30, 67
TauI GCSGC 1 cut(s) 244
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 2 cut(s) 57, 282
Tru9I TTAA 2 cut(s) 57, 282
TscAI CASTG 2 cut(s) 31, 190
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 1 cut(s) 238
Tsp45I GTSAC 1 cut(s) 298
TspRI CASTG 2 cut(s) 31, 190
XapI RAATTY 1 cut(s) 20
XceI RCATGY 2 cut(s) 121, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.