Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_420

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

866563 .. 874471

Gene Structure 7909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGTGACCGTCGAGGAAGTTCGCAAGGCTCAACGGGCTGAGGGTCCGGCCACGGTATTCGCCATTGGGACAGCAACTCCTCCCAATTGTGTGGACCAAGCTACATACCCCGACTATTACTTTCGTATCACCAACAGTGAGCACAAGGCTGAGCTCAAAGAAAAATTCCAGCGCATGTTTGGGCCTGGCCTCACGGTGGAGACCGTCGTGCTTCACAGCGTGGCTGCTTTTATGCGGAAGAGAATTCTAACGTGGAAAACCTTACTGAAAACATCATCAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0016210 GO:0016740 GO:0016746 GO:0016747 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 ko04712 map00941 map01100 map01110 map04712

Pfam Domains

Protein Families

Chal_sti_synt_C Chal_sti_synt_N

Protein Analysis

95

Amino Acids

10.61

Weight (kDa)

9.46

Isoelectric Point (pI)

20.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chal_sti_synt_N	PF00195	5 - 60	6.1e-21	Chalcone and stilbene synthases, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	235
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	2 cut(s)	164, 243
AdeI	CACNNNGTG	1 cut(s)	220
AfiI	CCNNNNNNNGG	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	2 cut(s)	101, 154
AluI	AGCT	2 cut(s)	101, 154
Alw21I	GWGCWC	2 cut(s)	144, 156
Alw26I	GTCTC	1 cut(s)	194
AoxI	GGCC	3 cut(s)	48, 182, 187
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	2 cut(s)	164, 243
AspLEI	GCGC	1 cut(s)	174
AspS9I	GGNCC	3 cut(s)	44, 94, 182
AsuHPI	GGTGA	2 cut(s)	16, 121
AvaII	GGWCC	2 cut(s)	44, 94
BaeI	ACNNNNGTAYC	2 cut(s)	109, 142
BanII	GRGCYC	1 cut(s)	156
Bbv12I	GWGCWC	2 cut(s)	144, 156
BbvCI	CCTCAGC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	211
BciT130I	CCWGG	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	194
BisI	GCNGC	1 cut(s)	225
BlpI	GCTNAGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	226
Bme1390I	CCNGG	1 cut(s)	186
Bme18I	GGWCC	2 cut(s)	44, 94
BmgT120I	GGNCC	3 cut(s)	44, 94, 182
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	1 cut(s)	186
Bpu10I	CCTNAGC	1 cut(s)	39
Bpu1102I	GCTNAGC	1 cut(s)	150
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	51
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMII	CTCAG	2 cut(s)	30, 141
BseRI	GAGGAG	1 cut(s)	69
BseXI	GCAGC	1 cut(s)	211
BshFI	GGCC	3 cut(s)	50, 184, 189
BsiHKAI	GWGCWC	2 cut(s)	144, 156
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	82
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	82
BsnI	GGCC	3 cut(s)	50, 184, 189
Bso31I	GGTCTC	1 cut(s)	194
Bsp1286I	GDGCHC	2 cut(s)	144, 156
Bsp1720I	GCTNAGC	1 cut(s)	150
BspACI	CCGC	1 cut(s)	235
BspANI	GGCC	3 cut(s)	50, 184, 189
BspCNI	CTCAG	2 cut(s)	31, 142
BspLI	GGNNCC	1 cut(s)	45
BspTNI	GGTCTC	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	5 cut(s)	10, 55, 137, 196, 205
Bst6I	CTCTTC	1 cut(s)	233
BstDEI	CTNAG	2 cut(s)	39, 150
BstDSI	CCRYGG	1 cut(s)	51
BstEII	GGTNACC	1 cut(s)	4
BstHHI	GCGC	1 cut(s)	174
BstMAI	GTCTC	1 cut(s)	194
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNI	CCWGG	1 cut(s)	186
BstNSI	RCATGY	1 cut(s)	178
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	1 cut(s)	184
BstV1I	GCAGC	1 cut(s)	211
BstXI	CCANNNNNNTGG	1 cut(s)	91
BsuRI	GGCC	3 cut(s)	50, 184, 189
BtgI	CCRYGG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	142
CfoI	GCGC	1 cut(s)	174
Cfr13I	GGNCC	3 cut(s)	44, 94, 182
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	9 cut(s)	29, 38, 50, 101, 149, 154, 184, 189, 224
CviKI_1	RGCY	9 cut(s)	29, 38, 50, 101, 149, 154, 184, 189, 224
DdeI	CTNAG	2 cut(s)	39, 150
DraIII	CACNNNGTG	1 cut(s)	220
EaeI	YGGCCR	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
Ecl136II	GAGCTC	1 cut(s)	154
Eco24I	GRGCYC	1 cut(s)	156
Eco31I	GGTCTC	1 cut(s)	194
Eco47I	GGWCC	2 cut(s)	44, 94
Eco53kI	GAGCTC	1 cut(s)	154
Eco91I	GGTNACC	1 cut(s)	4
EcoICRI	GAGCTC	1 cut(s)	154
EcoO65I	GGTNACC	1 cut(s)	4
EcoRI	GAATTC	1 cut(s)	243
EcoRII	CCWGG	1 cut(s)	184
EcoT38I	GRGCYC	1 cut(s)	156
FaeI	CATG	1 cut(s)	178
FaiI	YATR	4 cut(s)	106, 176, 233, 283
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	1 cut(s)	174
Fnu4HI	GCNGC	1 cut(s)	225
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	1 cut(s)	225
GlaI	GCGC	1 cut(s)	173
GluI	GCNGC	1 cut(s)	225
HaeIII	GGCC	3 cut(s)	50, 184, 189
HapII	CCGG	1 cut(s)	47
HhaI	GCGC	1 cut(s)	174
Hin1II	CATG	1 cut(s)	178
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	2 cut(s)	16, 121
Hpy166II	GTNNAC	1 cut(s)	94
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	2 cut(s)	14, 209
HpyCH4III	ACNGT	5 cut(s)	10, 55, 137, 196, 205
HpyCH4IV	ACGT	1 cut(s)	251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	2 cut(s)	39, 150
HpySE526I	ACGT	1 cut(s)	251
Hsp92II	CATG	1 cut(s)	178
HspAI	GCGC	1 cut(s)	172
LpnPI	CCDG	4 cut(s)	60, 171, 182, 198
Lsp1109I	GCAGC	1 cut(s)	211
MaeII	ACGT	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	4
MboII	GAAGA	1 cut(s)	250
MfeI	CAATTG	1 cut(s)	85
MhlI	GDGCHC	2 cut(s)	144, 156
MluCI	AATT	3 cut(s)	85, 164, 243
MnlI	CCTC	4 cut(s)	7, 34, 90, 200
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	186
MunI	CAATTG	1 cut(s)	85
MvaI	CCWGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	35
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	4
NspI	RCATGY	1 cut(s)	178
PkrI	GCNGC	1 cut(s)	226
Psp124BI	GAGCTC	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	184
PspEI	GGTNACC	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	3 cut(s)	44, 94, 182
SacI	GAGCTC	1 cut(s)	156
SatI	GCNGC	1 cut(s)	225
Sau96I	GGNCC	3 cut(s)	44, 94, 182
ScrFI	CCNGG	1 cut(s)	186
SduI	GDGCHC	2 cut(s)	144, 156
SetI	ASST	4 cut(s)	103, 156, 254, 263
SinI	GGWCC	2 cut(s)	44, 94
Sse9I	AATT	3 cut(s)	85, 164, 243
SsiI	CCGC	1 cut(s)	235
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	184
TaaI	ACNGT	5 cut(s)	10, 55, 137, 196, 205
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	1 cut(s)	12
TasI	AATT	3 cut(s)	85, 164, 243
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	4
TspRI	CASTG	1 cut(s)	142
VpaK11BI	GGWCC	2 cut(s)	44, 94
XapI	RAATTY	2 cut(s)	164, 243
XceI	RCATGY	1 cut(s)	178
XcmI	CCANNNNNNNNNTGG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.