Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_420

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

930259 .. 933711

Gene Structure 3453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTACCAGTTTGAATCATACCAGCTGTCAAAATCAAAACCAACTTACTATCATGCTCAATCAAAGAAGTATTGCCCCTGGGCACTTCGAAGGCAATACTTTGATATAGTATCTGCATTTCAGTGTTATGGAGAATATGTAAGTGGATCCATAAGCGATGAGCAGCGAAAGAATGTTGTCCTTAACTCTTGTCCTAGGGCTGGGGCTTGTGGTGGGATGTATACTGCTAATACGATGGCTTCTGTCATTGAAGCTATGGGAATGTCTATTCCTTACAGCTCTTCTACGCCTGCTGAAGATCCATTGAAATTGGATGAGTTATTACTCCAAAGTCACTACATAATGCTATGGTTACTGTCATGGCACTGGGGGGGGGTCAACCAATGCTGTTCTGCACTTGATTGCTATTGCGAGATCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004160 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009507 GO:0009532 GO:0009536 GO:0009553 GO:0009555 GO:0009570 GO:0009628 GO:0009651 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019752 GO:0022622 GO:0032501 GO:0032502 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0071704 GO:0099402 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

ILVD_EDD

Protein Analysis

141

Amino Acids

15.92

Weight (kDa)

5.85

Isoelectric Point (pI)

54.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ILVD_EDD_N	PF00920	34 - 114	8e-22	Dihydroxy-acid/6-phosphogluconate dehydratase N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	221
AclWI	GGATC	3 cut(s)	141, 154, 293
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	200
AgsI	TTSAA	3 cut(s)	14, 251, 307
AjnI	CCWGG	1 cut(s)	77
AluBI	AGCT	3 cut(s)	25, 254, 279
AluI	AGCT	3 cut(s)	25, 254, 279
AlwI	GGATC	3 cut(s)	141, 154, 293
ApeKI	GCWGC	1 cut(s)	163
AspA2I	CCTAGG	1 cut(s)	194
AsuII	TTCGAA	1 cut(s)	88
AvrII	CCTAGG	1 cut(s)	194
BaeGI	GKGCMC	1 cut(s)	85
BamHI	GGATCC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	175
BccI	CCATC	1 cut(s)	229
BciT130I	CCWGG	1 cut(s)	79
BfaI	CTAG	1 cut(s)	195
BisI	GCNGC	1 cut(s)	164
BlnI	CCTAGG	1 cut(s)	194
BlsI	GCNGC	1 cut(s)	165
Bme1390I	CCNGG	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	148
BmrFI	CCNGG	1 cut(s)	79
BmrI	ACTGGG	1 cut(s)	376
BmuI	ACTGGG	1 cut(s)	376
Bpu14I	TTCGAA	1 cut(s)	88
BsaJI	CCNNGG	3 cut(s)	77, 78, 194
BsaXI	ACNNNNNCTCC	2 cut(s)	123, 153
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse1I	ACTGG	2 cut(s)	7, 371
BseBI	CCWGG	1 cut(s)	79
BseDI	CCNNGG	3 cut(s)	77, 78, 194
BseGI	GGATG	2 cut(s)	222, 319
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseNI	ACTGG	2 cut(s)	7, 371
BseSI	GKGCMC	1 cut(s)	85
BseXI	GCAGC	1 cut(s)	175
BseYI	CCCAGC	1 cut(s)	200
BsgI	GTGCAG	1 cut(s)	378
BslI	CCNNNNNNNGG	1 cut(s)	200
Bsp119I	TTCGAA	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp143I	GATC	3 cut(s)	146, 298, 414
BspLI	GGNNCC	1 cut(s)	148
BspPI	GGATC	3 cut(s)	141, 154, 293
BspQI	GCTCTTC	1 cut(s)	286
BspT104I	TTCGAA	1 cut(s)	88
BsrI	ACTGG	2 cut(s)	7, 371
BssECI	CCNNGG	3 cut(s)	77, 78, 194
BssMI	GATC	3 cut(s)	146, 298, 414
BssNAI	GTATAC	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	194
Bst1107I	GTATAC	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	79
Bst4CI	ACNGT	1 cut(s)	357
Bst6I	CTCTTC	1 cut(s)	286
BstBI	TTCGAA	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	291
BstF5I	GGATG	2 cut(s)	222, 319
BstKTI	GATC	3 cut(s)	149, 301, 417
BstMBI	GATC	3 cut(s)	146, 298, 414
BstNI	CCWGG	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	77
BstSLI	GKGCMC	1 cut(s)	85
BstV1I	GCAGC	1 cut(s)	175
BstX2I	RGATCY	2 cut(s)	146, 298
BstYI	RGATCY	2 cut(s)	146, 298
BstZ17I	GTATAC	1 cut(s)	222
BtgZI	GCGATG	1 cut(s)	171
BtsCI	GGATG	2 cut(s)	222, 319
BtsIMutI	CAGTG	2 cut(s)	128, 364
Cac8I	GCNNGC	1 cut(s)	291
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	2 cut(s)	53, 360
CviJI	RGCY	6 cut(s)	25, 200, 206, 239, 254, 279
CviKI_1	RGCY	6 cut(s)	25, 200, 206, 239, 254, 279
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	3 cut(s)	148, 300, 416
DpnII	GATC	3 cut(s)	146, 298, 414
Eam1104I	CTCTTC	1 cut(s)	286
EarI	CTCTTC	1 cut(s)	286
Eco130I	CCWWGG	1 cut(s)	194
Eco57I	CTGAAG	1 cut(s)	315
EcoRII	CCWGG	1 cut(s)	77
EcoT14I	CCWWGG	1 cut(s)	194
ErhI	CCWWGG	1 cut(s)	194
FaeI	CATG	2 cut(s)	56, 363
FatI	CATG	2 cut(s)	52, 359
FblI	GTMKAC	1 cut(s)	221
Fnu4HI	GCNGC	1 cut(s)	164
FokI	GGATG	2 cut(s)	229, 326
Fsp4HI	GCNGC	1 cut(s)	164
FspBI	CTAG	1 cut(s)	195
GluI	GCNGC	1 cut(s)	164
GsaI	CCCAGC	1 cut(s)	204
Hin1II	CATG	2 cut(s)	56, 363
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HinfI	GANTC	1 cut(s)	14
Hpy166II	GTNNAC	2 cut(s)	222, 379
Hpy8I	GTNNAC	2 cut(s)	222, 379
HpyAV	CCTTC	1 cut(s)	84
HpyCH4III	ACNGT	1 cut(s)	357
HpyCH4V	TGCA	2 cut(s)	116, 395
Hsp92II	CATG	2 cut(s)	56, 363
Kzo9I	GATC	3 cut(s)	146, 298, 414
LguI	GCTCTTC	1 cut(s)	286
LpnPI	CCDG	7 cut(s)	20, 35, 64, 91, 186, 303, 352
Lsp1109I	GCAGC	1 cut(s)	175
MaeI	CTAG	1 cut(s)	195
MaeIII	GTNAC	2 cut(s)	332, 351
MalI	GATC	3 cut(s)	148, 300, 416
MboI	GATC	3 cut(s)	146, 298, 414
MboII	GAAGA	2 cut(s)	273, 308
MflI	RGATCY	2 cut(s)	146, 298
MhlI	GDGCHC	1 cut(s)	85
MluCI	AATT	1 cut(s)	308
MseI	TTAA	1 cut(s)	183
MslI	CAYNNNNRTG	1 cut(s)	121
MspA1I	CMGCKG	1 cut(s)	25
MspR9I	CCNGG	1 cut(s)	79
MvaI	CCWGG	1 cut(s)	79
NdeII	GATC	3 cut(s)	146, 298, 414
NlaIII	CATG	2 cut(s)	56, 363
NlaIV	GGNNCC	1 cut(s)	148
NmuCI	GTSAC	1 cut(s)	332
NspV	TTCGAA	1 cut(s)	88
PasI	CCCWGGG	1 cut(s)	78
PciSI	GCTCTTC	1 cut(s)	286
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	77
PspFI	CCCAGC	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	148
PsuI	RGATCY	2 cut(s)	146, 298
PvuII	CAGCTG	1 cut(s)	25
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	121
SapI	GCTCTTC	1 cut(s)	286
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	1 cut(s)	164
Sau3AI	GATC	3 cut(s)	146, 298, 414
ScrFI	CCNGG	1 cut(s)	79
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	3 cut(s)	27, 256, 281
SfuI	TTCGAA	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	121
Sse9I	AATT	1 cut(s)	308
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	77
StyI	CCWWGG	1 cut(s)	194
TaaI	ACNGT	1 cut(s)	357
TaqI	TCGA	1 cut(s)	88
TasI	AATT	1 cut(s)	308
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	2 cut(s)	128, 371
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	1 cut(s)	163
Tsp45I	GTSAC	1 cut(s)	332
TspRI	CASTG	2 cut(s)	128, 371
XmaJI	CCTAGG	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	221
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.