Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_420

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

934153 .. 935366

Gene Structure 1214 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGCAGAAAGTTTCCTTCCTTTGTCTAAAGGACAGTTTCGTACTTTTTCCTTTCATTCATTCAGGATATACAAGGCCCTTGGAAAACCCTATCAAGAAAACCAGCCATCTGCAAATATTATACGGAAATCTTGCACCAGAGGGTTCTGTAGCAAAAATTACAGGAAAAGAGGGGCTACATTTCTCTGGTCCTGCACTTGTCTTTGAAGGAGAGGAGTCCATGATTGCAGCTATCTCAGAGGATCCTATGAGTTTTAAGGGGAAAGTAGTTGTTATTAGAGGAGAGGGGCCAAAGGGAGGACCAGGCATGCCCGAATTGTTAACACCAACCAGTGCAATAATGGGTGCAGGACTAGGAAAGGAGGTTGCTTTATTGACGGATGGTAGGTTTTCAGGTGGTTCGCATGGATTTGTTGTTGGCCACATATGTCCTGAAGCACGGGTGTTTTTAACTTATCATTCATTTTTCCGCGAGCTTCATGTCATGTTACTGGATTTACATAAAAACTTTGGCGCCTTGATCGCTACTGAAAATTTAGTTGTGTTCCACAAAGAGAATGAAAAACTAATGTGTTGCAACTTGAAAGCGATAAGAAAGACGAAAAAAGAGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004160 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009507 GO:0009532 GO:0009536 GO:0009553 GO:0009555 GO:0009570 GO:0009628 GO:0009651 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019752 GO:0022622 GO:0032501 GO:0032502 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0071704 GO:0099402 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

ILVD_EDD

Protein Analysis

205

Amino Acids

22.27

Weight (kDa)

8.56

Isoelectric Point (pI)

28.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ILV_EDD_C	PF24877	25 - 147	7.5e-49	Dihydroxy-acid/6-phosphogluconate dehydratase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	512
AccII	CGCG	1 cut(s)	471
AciI	CCGC	1 cut(s)	469
AclWI	GGATC	2 cut(s)	236, 249
AcoI	YGGCCR	1 cut(s)	418
AcsI	RAATTY	1 cut(s)	532
AcuI	CTGAAG	1 cut(s)	453
AcyI	GRCGYC	1 cut(s)	513
AfaI	GTAC	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	296
AgsI	TTSAA	2 cut(s)	206, 583
AjnI	CCWGG	1 cut(s)	301
AluBI	AGCT	2 cut(s)	230, 475
AluI	AGCT	2 cut(s)	230, 475
AlwI	GGATC	2 cut(s)	236, 249
AoxI	GGCC	3 cut(s)	74, 287, 418
ApeKI	GCWGC	1 cut(s)	227
ApoI	RAATTY	1 cut(s)	532
AspLEI	GCGC	1 cut(s)	515
AspS9I	GGNCC	4 cut(s)	75, 188, 287, 299
AvaII	GGWCC	2 cut(s)	188, 299
BalI	TGGCCA	1 cut(s)	420
BamHI	GGATCC	1 cut(s)	241
BanI	GGYRCC	1 cut(s)	512
BbvI	GCAGC	1 cut(s)	239
BccI	CCATC	2 cut(s)	114, 374
BciT130I	CCWGG	1 cut(s)	303
BfaI	CTAG	1 cut(s)	353
BfmI	CTRYAG	1 cut(s)	147
BfoI	RGCGCY	1 cut(s)	516
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bme1390I	CCNGG	1 cut(s)	303
Bme18I	GGWCC	2 cut(s)	188, 299
BmgT120I	GGNCC	4 cut(s)	75, 188, 287, 299
BmiI	GGNNCC	3 cut(s)	243, 288, 514
BmrFI	CCNGG	1 cut(s)	303
BsaHI	GRCGYC	1 cut(s)	513
BsaJI	CCNNGG	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse1I	ACTGG	2 cut(s)	330, 495
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	2 cut(s)	330, 495
BseRI	GAGGAG	2 cut(s)	227, 294
BseXI	GCAGC	1 cut(s)	239
BsgI	GTGCAG	2 cut(s)	177, 366
Bsh1236I	CGCG	1 cut(s)	471
BshFI	GGCC	3 cut(s)	76, 289, 420
BshNI	GGYRCC	1 cut(s)	512
BslI	CCNNNNNNNGG	1 cut(s)	296
BsnI	GGCC	3 cut(s)	76, 289, 420
Bsp143I	GATC	2 cut(s)	241, 519
BspACI	CCGC	1 cut(s)	469
BspANI	GGCC	3 cut(s)	76, 289, 420
BspCNI	CTCAG	1 cut(s)	248
BspFNI	CGCG	1 cut(s)	471
BspLI	GGNNCC	3 cut(s)	243, 288, 514
BspPI	GGATC	2 cut(s)	236, 249
BspT107I	GGYRCC	1 cut(s)	512
BsrI	ACTGG	2 cut(s)	330, 495
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	2 cut(s)	241, 519
BssNI	GRCGYC	1 cut(s)	513
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	35
BstACI	GRCGYC	1 cut(s)	513
BstC8I	GCNNGC	2 cut(s)	308, 473
BstDEI	CTNAG	1 cut(s)	235
BstF5I	GGATG	1 cut(s)	385
BstFNI	CGCG	1 cut(s)	471
BstH2I	RGCGCY	1 cut(s)	516
BstHHI	GCGC	1 cut(s)	515
BstKTI	GATC	2 cut(s)	244, 522
BstMBI	GATC	2 cut(s)	241, 519
BstMWI	GCNNNNNNNGC	1 cut(s)	521
BstNI	CCWGG	1 cut(s)	303
BstNSI	RCATGY	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	301
BstSFI	CTRYAG	1 cut(s)	147
BstUI	CGCG	1 cut(s)	471
BstV1I	GCAGC	1 cut(s)	239
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BsuRI	GGCC	3 cut(s)	76, 289, 420
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	1 cut(s)	337
Cac8I	GCNNGC	2 cut(s)	308, 473
CfoI	GCGC	1 cut(s)	515
Cfr13I	GGNCC	4 cut(s)	75, 188, 287, 299
Csp6I	GTAC	1 cut(s)	41
CviAII	CATG	5 cut(s)	220, 307, 404, 479, 484
CviJI	RGCY	7 cut(s)	76, 105, 175, 230, 289, 420, 475
CviKI_1	RGCY	7 cut(s)	76, 105, 175, 230, 289, 420, 475
CviQI	GTAC	1 cut(s)	41
DdeI	CTNAG	1 cut(s)	235
DinI	GGCGCC	1 cut(s)	514
DpnI	GATC	2 cut(s)	243, 521
DpnII	GATC	2 cut(s)	241, 519
EaeI	YGGCCR	1 cut(s)	418
Eco130I	CCWWGG	1 cut(s)	78
Eco47I	GGWCC	2 cut(s)	188, 299
Eco57I	CTGAAG	1 cut(s)	453
EcoO109I	RGGNCCY	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	78
EgeI	GGCGCC	1 cut(s)	514
EheI	GGCGCC	1 cut(s)	514
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	5 cut(s)	223, 310, 407, 482, 487
FatI	CATG	5 cut(s)	219, 306, 403, 478, 483
FauNDI	CATATG	1 cut(s)	425
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	1 cut(s)	392
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	1 cut(s)	353
GlaI	GCGC	1 cut(s)	514
GluI	GCNGC	1 cut(s)	228
HaeII	RGCGCY	1 cut(s)	516
HaeIII	GGCC	3 cut(s)	76, 289, 420
HhaI	GCGC	1 cut(s)	515
Hin1I	GRCGYC	1 cut(s)	513
Hin1II	CATG	5 cut(s)	223, 310, 407, 482, 487
Hin6I	GCGC	1 cut(s)	513
HinP1I	GCGC	1 cut(s)	513
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HinfI	GANTC	1 cut(s)	215
HpaI	GTTAAC	1 cut(s)	321
Hpy166II	GTNNAC	1 cut(s)	321
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	3 cut(s)	63, 94, 431
Hpy8I	GTNNAC	1 cut(s)	321
HpyAV	CCTTC	2 cut(s)	25, 200
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4V	TGCA	8 cut(s)	4, 112, 134, 194, 227, 335, 347, 576
HpyF10VI	GCNNNNNNNGC	1 cut(s)	521
HpyF3I	CTNAG	1 cut(s)	235
Hsp92I	GRCGYC	1 cut(s)	513
Hsp92II	CATG	5 cut(s)	223, 310, 407, 482, 487
HspAI	GCGC	1 cut(s)	513
KasI	GGCGCC	1 cut(s)	512
KspAI	GTTAAC	1 cut(s)	321
Kzo9I	GATC	2 cut(s)	241, 519
Lsp1109I	GCAGC	1 cut(s)	239
MaeI	CTAG	1 cut(s)	353
MaeIII	GTNAC	1 cut(s)	486
MalI	GATC	2 cut(s)	243, 521
MboI	GATC	2 cut(s)	241, 519
MflI	RGATCY	1 cut(s)	241
MlsI	TGGCCA	1 cut(s)	420
MluCI	AATT	3 cut(s)	156, 314, 532
MluNI	TGGCCA	1 cut(s)	420
Mly113I	GGCGCC	1 cut(s)	513
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	8 cut(s)	133, 163, 205, 232, 272, 277, 290, 355
Mox20I	TGGCCA	1 cut(s)	420
MscI	TGGCCA	1 cut(s)	420
MseI	TTAA	3 cut(s)	255, 320, 449
Msp20I	TGGCCA	1 cut(s)	420
MspR9I	CCNGG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	303
MvnI	CGCG	1 cut(s)	471
MwoI	GCNNNNNNNGC	1 cut(s)	521
NarI	GGCGCC	1 cut(s)	513
NdeI	CATATG	1 cut(s)	425
NdeII	GATC	2 cut(s)	241, 519
NlaIII	CATG	5 cut(s)	223, 310, 407, 482, 487
NlaIV	GGNNCC	3 cut(s)	243, 288, 514
NspI	RCATGY	1 cut(s)	310
PaeI	GCATGC	1 cut(s)	310
PkrI	GCNGC	1 cut(s)	229
PleI	GAGTC	1 cut(s)	223
PluTI	GGCGCC	1 cut(s)	516
PpsI	GAGTC	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	3 cut(s)	243, 288, 514
PspPI	GGNCC	4 cut(s)	75, 188, 287, 299
PsuI	RGATCY	1 cut(s)	241
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
SaqAI	TTAA	3 cut(s)	255, 320, 449
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	2 cut(s)	241, 519
Sau96I	GGNCC	4 cut(s)	75, 188, 287, 299
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	303
SetI	ASST	5 cut(s)	232, 366, 389, 397, 477
SfcI	CTRYAG	1 cut(s)	147
SfoI	GGCGCC	1 cut(s)	514
SinI	GGWCC	2 cut(s)	188, 299
SphI	GCATGC	1 cut(s)	310
Sse9I	AATT	3 cut(s)	156, 314, 532
SsiI	CCGC	1 cut(s)	469
SspDI	GGCGCC	1 cut(s)	512
SspI	AATATT	1 cut(s)	117
SspMI	CTAG	1 cut(s)	353
StyD4I	CCNGG	1 cut(s)	301
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	35
TasI	AATT	3 cut(s)	156, 314, 532
Tru1I	TTAA	3 cut(s)	255, 320, 449
Tru9I	TTAA	3 cut(s)	255, 320, 449
TscAI	CASTG	1 cut(s)	337
TseI	GCWGC	1 cut(s)	227
TspDTI	ATGAA	5 cut(s)	43, 47, 450, 467, 573
TspGWI	ACGGA	2 cut(s)	138, 392
TspRI	CASTG	1 cut(s)	337
VpaK11BI	GGWCC	2 cut(s)	188, 299
XapI	RAATTY	1 cut(s)	532
XceI	RCATGY	1 cut(s)	310
XcmI	CCANNNNNNNNNTGG	1 cut(s)	337
XspI	CTAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.