pycom420g00840

Non-lysosomal glucosylceramidase that catalyzes the conversion of glucosylceramide to free glucose and ceramide

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_420
N/A
Physical Location & Seq
Forward (+)
1093236 .. 1099441
6206 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1695 bp
ATGCTCACGAACAGCATAAGTGAACCTGACCCAGAAGTGAAAATTTCATGCCGGCAAATATCACCATTCATCCCTCATAATTATCGAGAAAGCAATCTTCCTACAGCTGTTTTTGTTTACACGTTGGTGAACACTGGAAAAGAAAGAGCAAAAGTCAACCTTCTATTTACATGGGCGAATTCAATAGGAGGAATCTCACACTTGTCGGGCAATCATGTGAATGAACCATTTATTGGCAAAGATGGAGTCTCTGGTGTACTGCTGCATCACAAGACTGCAAAAGGGAACCCTCCTGTTACTTTTGCAATAGCTGCATGTGAAACTCAAAATGTAAGCGTGAGTGTGTTGCCATGTTTTGGGTCATCTGAAGGAAGTGCCACTACGGCCAAAGAAATGTGGGATAAAATGGTGCAGAATTTCAATTCTGGACCATGCATGTCTTCATCACCTGGAGAAACAATCTGTGCTGCAGTAGCAGCTTCTGCTTGGGTGGAACCTCATGGGAAGTGCACTGTTGCATTGGGCCTATCATGGTCATCTCCAAAAGTAAAATTTTTGAAGGGAAGCTCATACCATAGGAGATACACAAAATTCTATGGGACCTCTGAAAGGGCAGCTCAGGACATGGTGCATGATGCGCTGACAAATTTAATTATAAGCGATGGGAAGAAGATATTGAAAGGTGGCAAAACCCTATCCTCAGGGACGAAACATTACCAGAATGGTACAAGTTCACATTATTCAATGAGCTCTACTTTTTGGTGGCAGGTGGAACAATTTGGATCGTCTCCCTTGCCAACAACAAACATTAAAGACAATCGACACCAATTAACAAATGTTGAAAATACAGATGTTACGGTTACTGAATCTGAAGTGAAGAGCAATCACAGAGCAGTTGTTGAGCACACTGCAACTGGTTGCCAAAGGAGTGTAAAGTTGGACCCACAAAATGCCAATGAAGAGGTTGGGAGGTTCCTTTATCTGGAAGGAGTGGAATATATCATGTGGAACACATACGACGTACACTTCTATGCATCATTTGCCCTTCTTGAGCTGTTTCCCAAAATTGAACTTAATATTCAAAGGGACTTTGCAAAAGCTGTCTTATCAGAAGATGGAAGAAAAGTAAAGTTTCTGGCTGAGGGTAACTGGGGAATTCGTAAGGTTAGAGGAGCTGTCCCTCATGATCTGGGAACACACGATCCTTGGAACGAAATGAATGCATATAATATTCATGATACTAGTAAGTGGAAGGATTTGAACCCGAAGTTTGTACTTCAAGTGTATAGAGATTTTTCTGCATCGGGGGATATGTCATTTGGAGTTGATGTTTGGCCTGCTGTTCGTGCTGCAATGGAGTACATGGAACAATTCGACCGGGACAATGATGGACTCATTGAGAACGATGGTTTCCCTGATCAGACCTATGATGCTTGGACAGTTCATGGAGTAAGTGCTTATTGTGGGTGCTTGTGGCTTGCTGCACTTCAAGCTGCAGCAGCAATGGCCTTTCAACTAGGCGACAAGGCCTTTGCTGAATGGTGCAAAACCAAATTTTTAAAGGCAAAACCATCTTTTGAGGAAAAATTGTGGAACGGCTCTTATTTTAGTTACGATAGTGGGTCCAGTAGTAAAAGTAAGTCCATACAAGCAGATCAATCTCCTGGCTGGGCAGTGGTATACCGCATCCTTTAG

Protein Analysis

565

Amino Acids

62.62

Weight (kDa)

6.53

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydr_116N PF12215 7 - 216 9.4e-61 beta-glucosidase 2, glycosyl-hydrolase family 116 N-term
DUF608 PF04685 323 - 556 4.3e-102 Glycosyl-hydrolase family 116, catalytic region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 656
AarI CACCTGC 1 cut(s) 757
Acc36I ACCTGC 1 cut(s) 757
AccB7I CCANNNNNTGG 2 cut(s) 233, 356
AccI GTMKAC 1 cut(s) 1680
AciI CCGC 1 cut(s) 1684
AclWI GGATC 2 cut(s) 790, 1196
AcoI YGGCCR 1 cut(s) 384
AcsI RAATTY 8 cut(s) 42, 178, 415, 551, 590, 646, 1155, 1553
AcuI CTGAAG 2 cut(s) 387, 891
AfaI GTAC 5 cut(s) 258, 727, 1023, 1275, 1361
AfiI CCNNNNNNNGG 4 cut(s) 233, 356, 609, 982
AflIII ACRYGT 1 cut(s) 120
AhlI ACTAGT 1 cut(s) 1241
AjnI CCWGG 2 cut(s) 448, 1663
AjuI GAANNNNNNNTTGG 2 cut(s) 216, 248
AleI CACNNNNGTG 1 cut(s) 125
AloI GAACNNNNNNTCC 2 cut(s) 1186, 1218
Alw21I GWGCWC 3 cut(s) 512, 752, 906
Alw26I GTCTC 2 cut(s) 253, 792
Alw44I GTGCAC 1 cut(s) 508
AlwI GGATC 2 cut(s) 790, 1196
AlwNI CAGNNNCTG 1 cut(s) 482
AoxI GGCC 5 cut(s) 384, 523, 1334, 1506, 1527
ApaLI GTGCAC 1 cut(s) 508
ApoI RAATTY 8 cut(s) 42, 178, 415, 551, 590, 646, 1155, 1553
ArsI GACNNNNNNTTYG 4 cut(s) 231, 263, 1514, 1546
AspLEI GCGC 1 cut(s) 640
AspS9I GGNCC 5 cut(s) 428, 523, 600, 940, 1623
AsuC2I CCSGG 1 cut(s) 1379
AsuHPI GGTGA 3 cut(s) 54, 139, 438
AvaII GGWCC 4 cut(s) 428, 600, 940, 1623
AxyI CCTNAGG 1 cut(s) 700
BaeGI GKGCMC 1 cut(s) 512
BanII GRGCYC 1 cut(s) 752
BarI GAAGNNNNNNTAC 2 cut(s) 364, 396
BbsI GAAGAC 1 cut(s) 432
Bbv12I GWGCWC 3 cut(s) 512, 752, 906
BbvCI CCTCAGC 1 cut(s) 1140
BccI CCATC 6 cut(s) 236, 656, 1109, 1382, 1400, 1579
BceAI ACGGC 2 cut(s) 399, 1612
BcgI CGANNNNNNTGC 2 cut(s) 1202, 1236
BciT130I CCWGG 2 cut(s) 450, 1665
BclI TGATCA 1 cut(s) 1417
BcnI CCSGG 1 cut(s) 1379
BcoDI GTCTC 2 cut(s) 253, 792
BcuI ACTAGT 1 cut(s) 1241
BfaI CTAG 2 cut(s) 1242, 1517
BfmI CTRYAG 3 cut(s) 102, 468, 1494
BfuAI ACCTGC 1 cut(s) 757
BglI GCCNNNNNGGC 1 cut(s) 383
Bme1390I CCNGG 3 cut(s) 450, 1379, 1665
Bme18I GGWCC 4 cut(s) 428, 600, 940, 1623
BmgT120I GGNCC 5 cut(s) 428, 523, 600, 940, 1623
BmiI GGNNCC 6 cut(s) 287, 495, 601, 942, 974, 1624
BmrFI CCNGG 3 cut(s) 450, 1379, 1665
BmrI ACTGGG 1 cut(s) 1159
BmsI GCATC 5 cut(s) 274, 625, 1043, 1310, 1420
BmuI ACTGGG 1 cut(s) 1159
BpiI GAAGAC 1 cut(s) 432
BpmI CTGGAG 1 cut(s) 471
Bpu10I CCTNAGC 2 cut(s) 618, 1140
BpuEI CTTGAG 1 cut(s) 1070
BpuMI CCSGG 1 cut(s) 1379
BsaJI CCNNGG 1 cut(s) 1205
BsaXI ACNNNNNCTCC 2 cut(s) 1314, 1344
Bsc4I CCNNNNNNNGG 4 cut(s) 233, 356, 609, 982
Bse118I RCCGGY 1 cut(s) 51
Bse1I ACTGG 4 cut(s) 139, 919, 1154, 1626
Bse21I CCTNAGG 1 cut(s) 700
Bse3DI GCAATG 2 cut(s) 1359, 1509
BseBI CCWGG 2 cut(s) 450, 1665
BseDI CCNNGG 1 cut(s) 1205
BseGI GGATG 2 cut(s) 69, 1686
BseLI CCNNNNNNNGG 4 cut(s) 233, 356, 609, 982
BseMI GCAATG 2 cut(s) 1359, 1509
BseMII CTCAG 3 cut(s) 632, 714, 1131
BseNI ACTGG 4 cut(s) 139, 919, 1154, 1626
BseRI GAGGAG 1 cut(s) 1185
BseSI GKGCMC 1 cut(s) 512
BseYI CCCAGC 1 cut(s) 1668
BsgI GTGCAG 2 cut(s) 431, 1467
Bsh1285I CGRYCG 1 cut(s) 1378
BshFI GGCC 5 cut(s) 386, 525, 1336, 1508, 1529
BsiEI CGRYCG 1 cut(s) 1378
BsiHKAI GWGCWC 3 cut(s) 512, 752, 906
BsiSI CCGG 2 cut(s) 52, 1378
BslFI GGGAC 5 cut(s) 613, 718, 1100, 1163, 1394
BslI CCNNNNNNNGG 4 cut(s) 233, 356, 609, 982
BsmAI GTCTC 2 cut(s) 253, 792
BsmBI CGTCTC 1 cut(s) 792
BsmFI GGGAC 5 cut(s) 613, 718, 1100, 1163, 1394
BsmI GAATGC 1 cut(s) 1225
BsnI GGCC 5 cut(s) 386, 525, 1336, 1508, 1529
Bsp1286I GDGCHC 3 cut(s) 512, 752, 906
Bsp143I GATC 5 cut(s) 782, 1186, 1201, 1417, 1654
BspACI CCGC 1 cut(s) 1684
BspANI GGCC 5 cut(s) 386, 525, 1336, 1508, 1529
BspCNI CTCAG 3 cut(s) 631, 713, 1132
BspHI TCATGA 2 cut(s) 1183, 1234
BspLI GGNNCC 6 cut(s) 287, 495, 601, 942, 974, 1624
BspMAI CTGCAG 2 cut(s) 472, 1498
BspMI ACCTGC 1 cut(s) 757
BspPI GGATC 2 cut(s) 790, 1196
BspQI GCTCTTC 1 cut(s) 872
BsrDI GCAATG 2 cut(s) 1359, 1509
BsrFI RCCGGY 1 cut(s) 51
BsrI ACTGG 4 cut(s) 139, 919, 1154, 1626
BssAI RCCGGY 1 cut(s) 51
BssECI CCNNGG 1 cut(s) 1205
BssMI GATC 5 cut(s) 782, 1186, 1201, 1417, 1654
BssNAI GTATAC 1 cut(s) 1681
BssT1I CCWWGG 1 cut(s) 1205
Bst1107I GTATAC 1 cut(s) 1681
Bst2UI CCWGG 2 cut(s) 450, 1665
Bst4CI ACNGT 3 cut(s) 514, 859, 1441
Bst6I CTCTTC 2 cut(s) 872, 954
BstAPI GCANNNNNTGC 3 cut(s) 311, 482, 1040
BstC8I GCNNGC 3 cut(s) 53, 1338, 1479
BstDEI CTNAG 3 cut(s) 618, 700, 1140
BstENI CCTNNNNNAGG 1 cut(s) 607
BstF5I GGATG 2 cut(s) 69, 1686
BstHHI GCGC 1 cut(s) 640
BstKTI GATC 5 cut(s) 785, 1189, 1204, 1420, 1657
BstMAI GTCTC 2 cut(s) 253, 792
BstMBI GATC 5 cut(s) 782, 1186, 1201, 1417, 1654
BstMCI CGRYCG 1 cut(s) 1378
BstNI CCWGG 2 cut(s) 450, 1665
BstNSI RCATGY 2 cut(s) 318, 439
BstSCI CCNGG 3 cut(s) 448, 1377, 1663
BstSFI CTRYAG 3 cut(s) 102, 468, 1494
BstSLI GKGCMC 1 cut(s) 512
BstV2I GAAGAC 1 cut(s) 432
BstZ17I GTATAC 1 cut(s) 1681
Bsu36I CCTNAGG 1 cut(s) 700
BsuRI GGCC 5 cut(s) 386, 525, 1336, 1508, 1529
BtgZI GCGATG 1 cut(s) 675
BtsCI GGATG 2 cut(s) 69, 1686
BtsI GCAGTG 2 cut(s) 906, 1680
BtsIMutI CAGTG 4 cut(s) 132, 510, 906, 1680
BveI ACCTGC 1 cut(s) 757
Cac8I GCNNGC 3 cut(s) 53, 1338, 1479
CaiI CAGNNNCTG 1 cut(s) 482
CciI TCATGA 2 cut(s) 1183, 1234
CfoI GCGC 1 cut(s) 640
Cfr10I RCCGGY 1 cut(s) 51
Cfr13I GGNCC 5 cut(s) 428, 523, 600, 940, 1623
Csp6I GTAC 5 cut(s) 257, 726, 1022, 1274, 1360
CviQI GTAC 5 cut(s) 257, 726, 1022, 1274, 1360
DdeI CTNAG 3 cut(s) 618, 700, 1140
DpnI GATC 5 cut(s) 784, 1188, 1203, 1419, 1656
DpnII GATC 5 cut(s) 782, 1186, 1201, 1417, 1654
DraI TTTAAA 1 cut(s) 1560
EaeI YGGCCR 1 cut(s) 384
Eam1104I CTCTTC 2 cut(s) 872, 954
EarI CTCTTC 2 cut(s) 872, 954
Ecl136II GAGCTC 1 cut(s) 750
Eco130I CCWWGG 1 cut(s) 1205
Eco147I AGGCCT 1 cut(s) 1529
Eco24I GRGCYC 1 cut(s) 752
Eco47I GGWCC 4 cut(s) 428, 600, 940, 1623
Eco53kI GAGCTC 1 cut(s) 750
Eco57I CTGAAG 2 cut(s) 387, 891
Eco81I CCTNAGG 1 cut(s) 700
EcoICRI GAGCTC 1 cut(s) 750
EcoNI CCTNNNNNAGG 1 cut(s) 607
EcoO109I RGGNCCY 1 cut(s) 600
EcoRI GAATTC 2 cut(s) 178, 1155
EcoRII CCWGG 2 cut(s) 448, 1663
EcoT14I CCWWGG 1 cut(s) 1205
EcoT22I ATGCAT 3 cut(s) 437, 1036, 1225
EcoT38I GRGCYC 1 cut(s) 752
ErhI CCWWGG 1 cut(s) 1205
Esp3I CGTCTC 1 cut(s) 792
FalI AAGNNNNNCTT 2 cut(s) 144, 176
FaqI GGGAC 5 cut(s) 613, 718, 1100, 1163, 1394
FbaI TGATCA 1 cut(s) 1417
FblI GTMKAC 1 cut(s) 1680
FokI GGATG 2 cut(s) 56, 1673
FriOI GRGCYC 1 cut(s) 752
FspBI CTAG 2 cut(s) 1242, 1517
GlaI GCGC 1 cut(s) 639
GsaI CCCAGC 1 cut(s) 1672
GsuI CTGGAG 1 cut(s) 471
HaeIII GGCC 5 cut(s) 386, 525, 1336, 1508, 1529
HapII CCGG 2 cut(s) 52, 1378
HhaI GCGC 1 cut(s) 640
Hin6I GCGC 1 cut(s) 638
HinP1I GCGC 1 cut(s) 638
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 4 cut(s) 192, 246, 866, 1392
HpaII CCGG 2 cut(s) 52, 1378
HphI GGTGA 3 cut(s) 54, 139, 438
Hpy166II GTNNAC 9 cut(s) 23, 118, 130, 157, 257, 510, 734, 1024, 1681
Hpy188I TCNGA 5 cut(s) 367, 607, 871, 1111, 1422
Hpy188III TCNNGA 8 cut(s) 7, 86, 426, 620, 983, 1049, 1184, 1235
Hpy8I GTNNAC 9 cut(s) 23, 118, 130, 157, 257, 510, 734, 1024, 1681
Hpy99I CGWCG 1 cut(s) 1022
HpyAV CCTTC 6 cut(s) 170, 362, 553, 980, 1055, 1246
HpyCH4III ACNGT 3 cut(s) 514, 859, 1441
HpyCH4IV ACGT 2 cut(s) 122, 1020
HpyF3I CTNAG 3 cut(s) 618, 700, 1140
HpySE526I ACGT 2 cut(s) 122, 1020
HspAI GCGC 1 cut(s) 638
KroI GCCGGC 1 cut(s) 51
KroNI GCCGGC 1 cut(s) 53
Ksp22I TGATCA 1 cut(s) 1417
Kzo9I GATC 5 cut(s) 782, 1186, 1201, 1417, 1654
LguI GCTCTTC 1 cut(s) 872
LmnI GCTCC 1 cut(s) 1172
LweI GCATC 5 cut(s) 274, 625, 1043, 1310, 1420
MaeI CTAG 2 cut(s) 1242, 1517
MaeII ACGT 2 cut(s) 122, 1020
MaeIII GTNAC 5 cut(s) 295, 853, 859, 1145, 1610
MalI GATC 5 cut(s) 784, 1188, 1203, 1419, 1656
MboI GATC 5 cut(s) 782, 1186, 1201, 1417, 1654
MboII GAAGA 8 cut(s) 89, 432, 679, 682, 889, 971, 1124, 1131
MhlI GDGCHC 3 cut(s) 512, 752, 906
MlyI GAGTC 2 cut(s) 255, 1386
MmeI TCCRAC 1 cut(s) 918
Mph1103I ATGCAT 3 cut(s) 437, 1036, 1225
MroNI GCCGGC 1 cut(s) 51
MseI TTAA 5 cut(s) 650, 810, 830, 1074, 1559
MslI CAYNNNNRTG 3 cut(s) 125, 219, 1029
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 2 cut(s) 52, 1378
MspR9I CCNGG 3 cut(s) 450, 1379, 1665
Mva1269I GAATGC 1 cut(s) 1225
MvaI CCWGG 2 cut(s) 450, 1665
NaeI GCCGGC 1 cut(s) 53
NciI CCSGG 1 cut(s) 1379
NdeII GATC 5 cut(s) 782, 1186, 1201, 1417, 1654
NgoMIV GCCGGC 1 cut(s) 51
NlaIV GGNNCC 6 cut(s) 287, 495, 601, 942, 974, 1624
NsiI ATGCAT 3 cut(s) 437, 1036, 1225
NspI RCATGY 2 cut(s) 318, 439
OliI CACNNNNGTG 1 cut(s) 125
PagI TCATGA 2 cut(s) 1183, 1234
PaqCI CACCTGC 1 cut(s) 757
PceI AGGCCT 1 cut(s) 1529
PciSI GCTCTTC 1 cut(s) 872
PctI GAATGC 1 cut(s) 1225
PdiI GCCGGC 1 cut(s) 53
PfeI GAWTC 2 cut(s) 192, 866
PflMI CCANNNNNTGG 2 cut(s) 233, 356
PleI GAGTC 2 cut(s) 254, 1386
PpsI GAGTC 2 cut(s) 254, 1386
PpuMI RGGWCCY 1 cut(s) 600
PsiI TTATAA 1 cut(s) 656
Psp124BI GAGCTC 1 cut(s) 752
Psp5II RGGWCCY 1 cut(s) 600
Psp6I CCWGG 2 cut(s) 448, 1663
PspFI CCCAGC 1 cut(s) 1668
PspGI CCWGG 2 cut(s) 448, 1663
PspN4I GGNNCC 6 cut(s) 287, 495, 601, 942, 974, 1624
PspPI GGNCC 5 cut(s) 428, 523, 600, 940, 1623
PspPPI RGGWCCY 1 cut(s) 600
PstI CTGCAG 2 cut(s) 472, 1498
PstNI CAGNNNCTG 1 cut(s) 482
PvuII CAGCTG 1 cut(s) 107
RsaI GTAC 5 cut(s) 258, 727, 1023, 1275, 1361
RsaNI GTAC 5 cut(s) 257, 726, 1022, 1274, 1360
RseI CAYNNNNRTG 3 cut(s) 125, 219, 1029
SacI GAGCTC 1 cut(s) 752
SapI GCTCTTC 1 cut(s) 872
SaqAI TTAA 5 cut(s) 650, 810, 830, 1074, 1559
Sau3AI GATC 5 cut(s) 782, 1186, 1201, 1417, 1654
Sau96I GGNCC 5 cut(s) 428, 523, 600, 940, 1623
SchI GAGTC 2 cut(s) 255, 1386
ScrFI CCNGG 3 cut(s) 450, 1379, 1665
SduI GDGCHC 3 cut(s) 512, 752, 906
SfaNI GCATC 5 cut(s) 274, 625, 1043, 1310, 1420
SfcI CTRYAG 3 cut(s) 102, 468, 1494
SinI GGWCC 4 cut(s) 428, 600, 940, 1623
SmiMI CAYNNNNRTG 3 cut(s) 125, 219, 1029
SmlI CTYRAG 1 cut(s) 1049
SmoI CTYRAG 1 cut(s) 1049
SpeI ACTAGT 1 cut(s) 1241
SseBI AGGCCT 1 cut(s) 1529
SsiI CCGC 1 cut(s) 1684
SspI AATATT 2 cut(s) 1078, 1231
SspMI CTAG 2 cut(s) 1242, 1517
SstI GAGCTC 1 cut(s) 752
StuI AGGCCT 1 cut(s) 1529
StyD4I CCNGG 3 cut(s) 448, 1377, 1663
StyI CCWWGG 1 cut(s) 1205
TaaI ACNGT 3 cut(s) 514, 859, 1441
TaiI ACGT 2 cut(s) 125, 1023
TaqI TCGA 3 cut(s) 85, 820, 1374
TatI WGTACW 3 cut(s) 256, 1273, 1359
TfiI GAWTC 2 cut(s) 192, 866
Tru1I TTAA 5 cut(s) 650, 810, 830, 1074, 1559
Tru9I TTAA 5 cut(s) 650, 810, 830, 1074, 1559
TscAI CASTG 4 cut(s) 139, 517, 913, 1680
TspDTI ATGAA 8 cut(s) 36, 58, 237, 432, 972, 1223, 1232, 1433
TspRI CASTG 4 cut(s) 139, 517, 913, 1680
Van91I CCANNNNNTGG 2 cut(s) 233, 356
VneI GTGCAC 1 cut(s) 508
VpaK11BI GGWCC 4 cut(s) 428, 600, 940, 1623
XagI CCTNNNNNAGG 1 cut(s) 607
XapI RAATTY 8 cut(s) 42, 178, 415, 551, 590, 646, 1155, 1553
XceI RCATGY 2 cut(s) 318, 439
XmiI GTMKAC 1 cut(s) 1680
XspI CTAG 2 cut(s) 1242, 1517
Zsp2I ATGCAT 3 cut(s) 437, 1036, 1225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.