Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_420

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1099509 .. 1100602

Gene Structure 1094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAAAGTTAAAGGAGGCAGAATGGGTGCTGTAAACGGAATGCATCCCAGTGGGAAGGTGGATGAGTCTTGCATGCAGTCACGTGAAATATGGACTGGTGTCACATATGGGGTGGCTGCTACGATGATTCTTGCTGGAAAGGAGAAAGAGGCATTCACTACTGCTGAAGGTATTTTTATTGCTGGCTGGTCTGAAGAGGGCTTTGGATACTGGTTCCAGACGCCTGAAGGATGGACGATGGATGGGCACTTCAGATCTCTAATATATATGAGGCCACTATCGATTTGGGGGATGCAATTCGCCTTGAATCTGCCCAAGGCAATTCTCGAGGCTCCTCAGATCAACATAATGGACAGAATACATTTATCGTCTGTCAGCTCACAATCCTCTCACAACGAAACAGGTGTGAGAAAGATTGCAACCAAGGAAAAATGCTTTGGGAATTCAGTTTTTAACTGTGCATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0006082 GO:0006629 GO:0007275 GO:0007399 GO:0007417 GO:0008150 GO:0008152 GO:0008202 GO:0008206 GO:0008422 GO:0009056 GO:0009987 GO:0015926 GO:0016020 GO:0016021 GO:0016137 GO:0016139 GO:0016787 GO:0016798 GO:0019752 GO:0021953 GO:0021954 GO:0022008 GO:0030154 GO:0030182 GO:0031224 GO:0032501 GO:0032502 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044425 GO:0048468 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0071704 GO:1901135 GO:1901136 GO:1901360 GO:1901575 GO:1901615 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00511 ko00600 ko01100 map00511 map00600 map01100

Pfam Domains

Protein Families

DUF608 Glyco_hydr_116N

Protein Analysis

156

Amino Acids

17.12

Weight (kDa)

7.7

Isoelectric Point (pI)

44.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF608	PF04685	1 - 98	5e-37	Glycosyl-hydrolase family 116, catalytic region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	442
AcuI	CTGAAG	4 cut(s)	186, 213, 235, 246
AcvI	CACGTG	1 cut(s)	83
AcyI	GRCGYC	1 cut(s)	221
AgsI	TTSAA	1 cut(s)	307
AjuI	GAANNNNNNNTTGG	4 cut(s)	186, 218, 420, 452
AluBI	AGCT	1 cut(s)	378
AluI	AGCT	1 cut(s)	378
Ama87I	CYCGRG	1 cut(s)	326
AoxI	GGCC	1 cut(s)	272
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	1 cut(s)	442
AvaI	CYCGRG	1 cut(s)	326
BaeGI	GKGCMC	1 cut(s)	249
BbrPI	CACGTG	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	3 cut(s)	225, 232, 236
BciVI	GTATCC	1 cut(s)	200
BfuI	GTATCC	1 cut(s)	200
BglII	AGATCT	1 cut(s)	254
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
BmeT110I	CYCGRG	1 cut(s)	326
BmiI	GGNNCC	2 cut(s)	215, 333
BmrI	ACTGGG	1 cut(s)	42
BmsI	GCATC	2 cut(s)	52, 282
BmuI	ACTGGG	1 cut(s)	42
BoxI	GACNNNNGTC	1 cut(s)	98
Bsa29I	ATCGAT	1 cut(s)	281
BsaAI	YACGTR	1 cut(s)	83
BsaHI	GRCGYC	1 cut(s)	221
BsaJI	CCNNGG	2 cut(s)	315, 423
Bse1I	ACTGG	3 cut(s)	48, 100, 215
BseCI	ATCGAT	1 cut(s)	281
BseDI	CCNNGG	2 cut(s)	315, 423
BseGI	GGATG	5 cut(s)	43, 67, 236, 247, 297
BseMII	CTCAG	1 cut(s)	350
BseNI	ACTGG	3 cut(s)	48, 100, 215
BseRI	GAGGAG	1 cut(s)	324
BseSI	GKGCMC	1 cut(s)	249
BseXI	GCAGC	1 cut(s)	103
BshFI	GGCC	1 cut(s)	274
BshVI	ATCGAT	1 cut(s)	281
BsiHKCI	CYCGRG	1 cut(s)	326
BsmI	GAATGC	2 cut(s)	45, 152
BsnI	GGCC	1 cut(s)	274
BsoBI	CYCGRG	1 cut(s)	326
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	2 cut(s)	254, 339
BspANI	GGCC	1 cut(s)	274
BspCNI	CTCAG	1 cut(s)	349
BspDI	ATCGAT	1 cut(s)	281
BspLI	GGNNCC	2 cut(s)	215, 333
BsrI	ACTGG	3 cut(s)	48, 100, 215
BssECI	CCNNGG	2 cut(s)	315, 423
BssMI	GATC	2 cut(s)	254, 339
BssNI	GRCGYC	1 cut(s)	221
BssT1I	CCWWGG	2 cut(s)	315, 423
Bst4CI	ACNGT	1 cut(s)	458
Bst6I	CTCTTC	1 cut(s)	189
BstACI	GRCGYC	1 cut(s)	221
BstBAI	YACGTR	1 cut(s)	83
BstC8I	GCNNGC	3 cut(s)	74, 184, 463
BstDEI	CTNAG	1 cut(s)	336
BstF5I	GGATG	5 cut(s)	43, 67, 236, 247, 297
BstKTI	GATC	2 cut(s)	257, 342
BstMBI	GATC	2 cut(s)	254, 339
BstNSI	RCATGY	2 cut(s)	76, 465
BstPAI	GACNNNNGTC	1 cut(s)	98
BstSLI	GKGCMC	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	254
BstYI	RGATCY	1 cut(s)	254
Bsu15I	ATCGAT	1 cut(s)	281
BsuI	GTATCC	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	274
BsuTUI	ATCGAT	1 cut(s)	281
BtsCI	GGATG	5 cut(s)	43, 67, 236, 247, 297
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	3 cut(s)	74, 184, 463
ClaI	ATCGAT	1 cut(s)	281
CseI	GACGC	1 cut(s)	229
CviAII	CATG	2 cut(s)	73, 462
CviJI	RGCY	6 cut(s)	116, 186, 201, 274, 332, 378
CviKI_1	RGCY	6 cut(s)	116, 186, 201, 274, 332, 378
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	2 cut(s)	256, 341
DpnII	GATC	2 cut(s)	254, 339
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Eco130I	CCWWGG	2 cut(s)	315, 423
Eco57I	CTGAAG	4 cut(s)	186, 213, 235, 246
Eco72I	CACGTG	1 cut(s)	83
Eco88I	CYCGRG	1 cut(s)	326
EcoRI	GAATTC	1 cut(s)	442
EcoT14I	CCWWGG	2 cut(s)	315, 423
EcoT22I	ATGCAT	1 cut(s)	45
ErhI	CCWWGG	2 cut(s)	315, 423
FaeI	CATG	2 cut(s)	76, 465
FaiI	YATR	9 cut(s)	74, 91, 106, 108, 265, 267, 269, 347, 463
FatI	CATG	2 cut(s)	72, 461
FauNDI	CATATG	1 cut(s)	106
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	5 cut(s)	30, 74, 243, 254, 304
Fsp4HI	GCNGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	274
HgaI	GACGC	1 cut(s)	229
Hin1I	GRCGYC	1 cut(s)	221
Hin1II	CATG	2 cut(s)	76, 465
HinfI	GANTC	3 cut(s)	65, 127, 307
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	3 cut(s)	193, 254, 339
Hpy188III	TCNNGA	2 cut(s)	217, 326
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	3 cut(s)	49, 161, 221
HpyCH4III	ACNGT	1 cut(s)	458
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	6 cut(s)	43, 72, 76, 295, 419, 461
HpyF3I	CTNAG	1 cut(s)	336
HpySE526I	ACGT	1 cut(s)	82
Hsp92I	GRCGYC	1 cut(s)	221
Hsp92II	CATG	2 cut(s)	76, 465
Kzo9I	GATC	2 cut(s)	254, 339
LmnI	GCTCC	1 cut(s)	337
LpnPI	CCDG	9 cut(s)	61, 81, 120, 168, 172, 196, 230, 237, 387
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	2 cut(s)	52, 282
MaeII	ACGT	1 cut(s)	82
MaeIII	GTNAC	2 cut(s)	78, 100
MalI	GATC	2 cut(s)	256, 341
MboI	GATC	2 cut(s)	254, 339
MboII	GAAGA	1 cut(s)	206
MflI	RGATCY	1 cut(s)	254
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	3 cut(s)	296, 321, 442
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	7 cut(s)	8, 142, 190, 264, 322, 345, 397
Mph1103I	ATGCAT	1 cut(s)	45
MseI	TTAA	2 cut(s)	9, 453
MslI	CAYNNNNRTG	1 cut(s)	48
Mva1269I	GAATGC	2 cut(s)	45, 152
NdeI	CATATG	1 cut(s)	106
NdeII	GATC	2 cut(s)	254, 339
NlaIII	CATG	2 cut(s)	76, 465
NlaIV	GGNNCC	2 cut(s)	215, 333
NmuCI	GTSAC	2 cut(s)	78, 100
NsiI	ATGCAT	1 cut(s)	45
NspI	RCATGY	2 cut(s)	76, 465
PaeI	GCATGC	2 cut(s)	76, 465
PaeR7I	CTCGAG	1 cut(s)	326
PctI	GAATGC	2 cut(s)	45, 152
PfeI	GAWTC	2 cut(s)	127, 307
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	1 cut(s)	73
PmaCI	CACGTG	1 cut(s)	83
PmlI	CACGTG	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	73
Ppu21I	YACGTR	1 cut(s)	83
PshAI	GACNNNNGTC	1 cut(s)	98
PspCI	CACGTG	1 cut(s)	83
PspN4I	GGNNCC	2 cut(s)	215, 333
PsuI	RGATCY	1 cut(s)	254
RseI	CAYNNNNRTG	1 cut(s)	48
SaqAI	TTAA	2 cut(s)	9, 453
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	2 cut(s)	254, 339
SchI	GAGTC	1 cut(s)	74
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	5 cut(s)	60, 85, 172, 380, 406
SfaNI	GCATC	2 cut(s)	52, 282
Sfr274I	CTCGAG	1 cut(s)	326
SlaI	CTCGAG	1 cut(s)	326
SmiMI	CAYNNNNRTG	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
SphI	GCATGC	2 cut(s)	76, 465
Sse9I	AATT	3 cut(s)	296, 321, 442
StyI	CCWWGG	2 cut(s)	315, 423
TaaI	ACNGT	1 cut(s)	458
TaiI	ACGT	1 cut(s)	85
TaqI	TCGA	2 cut(s)	281, 327
TasI	AATT	3 cut(s)	296, 321, 442
TfiI	GAWTC	2 cut(s)	127, 307
Tru1I	TTAA	2 cut(s)	9, 453
Tru9I	TTAA	2 cut(s)	9, 453
TscAI	CASTG	1 cut(s)	55
TseFI	GTSAC	2 cut(s)	78, 100
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	2 cut(s)	78, 100
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	51
TspRI	CASTG	1 cut(s)	55
XapI	RAATTY	1 cut(s)	442
XceI	RCATGY	2 cut(s)	76, 465
XcmI	CCANNNNNNNNNTGG	2 cut(s)	55, 282
XhoI	CTCGAG	1 cut(s)	326
Zsp2I	ATGCAT	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.