Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_420

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1527607 .. 1528005

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGAGTCCACCATATTAAACACTGCTCACTGCTTTCCCTTTCCTCCTCCCTCACCGCCCTTCCTTCCTCCTCTTTGTTCGACAGCCACCAACTCTCCACTTCTTCACTCTTCAAATTTAACCTCCCGTCAAAATCCAGAACCCATAAAAGTGTGGCCATTTCTCTCCATTTTCCTTGGCGCCTCCGCCCTCACGAAAATGCTGACTTCCATCGCCGATTTCTCCACCTTCGGAGATCTAATCCCAAGGCTTATCACCCTCACCTTCTTCTTCACCCAAGGCTTCATCAAGACCGGACTCCAATTTCGAATTGCATACCAGGCTCATCACATTATCAAGACCAGACGTCATAGGCCCACAAGATCGGACTCTGACTTTGAACCCAGCGACCAAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006536 GO:0006541 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009064 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009624 GO:0009941 GO:0009987 GO:0015075 GO:0015131 GO:0015139 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015729 GO:0015740 GO:0015742 GO:0015743 GO:0015849 GO:0016020 GO:0019676 GO:0019740 GO:0019752 GO:0022857 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051181 GO:0051184 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071423 GO:0071702 GO:0071704 GO:0098656 GO:1901564 GO:1901605 GO:1902356 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_sulph_symp

Protein Analysis

133

Amino Acids

14.83

Weight (kDa)

9.23

Isoelectric Point (pI)

56.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	349
AccB1I	GGYRCC	1 cut(s)	179
AciI	CCGC	2 cut(s)	56, 186
AcoI	YGGCCR	1 cut(s)	155
AcsI	RAATTY	1 cut(s)	115
AcyI	GRCGYC	2 cut(s)	180, 346
AgsI	TTSAA	2 cut(s)	114, 380
AhdI	GACNNNNNGTC	1 cut(s)	345
AjnI	CCWGG	1 cut(s)	318
AoxI	GGCC	2 cut(s)	155, 353
ApoI	RAATTY	1 cut(s)	115
ArsI	GACNNNNNNTTYG	4 cut(s)	288, 320, 359, 391
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	354
AsuHPI	GGTGA	4 cut(s)	45, 247, 253, 265
AsuII	TTCGAA	1 cut(s)	307
BalI	TGGCCA	1 cut(s)	157
BanI	GGYRCC	1 cut(s)	179
BccI	CCATC	1 cut(s)	218
BciT130I	CCWGG	1 cut(s)	320
BfaI	CTAG	1 cut(s)	397
BfoI	RGCGCY	1 cut(s)	183
BglII	AGATCT	1 cut(s)	235
Bme1390I	CCNGG	1 cut(s)	320
BmeRI	GACNNNNNGTC	1 cut(s)	345
BmgT120I	GGNCC	1 cut(s)	354
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	320
Bpu14I	TTCGAA	1 cut(s)	307
BsaHI	GRCGYC	2 cut(s)	180, 346
BsaJI	CCNNGG	3 cut(s)	175, 245, 277
BsaWI	WCCGGW	1 cut(s)	293
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
BseBI	CCWGG	1 cut(s)	320
BseDI	CCNNGG	3 cut(s)	175, 245, 277
BseRI	GAGGAG	2 cut(s)	36, 60
BseYI	CCCAGC	1 cut(s)	383
BshFI	GGCC	2 cut(s)	157, 355
BshNI	GGYRCC	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	294
BsnI	GGCC	2 cut(s)	157, 355
Bsp119I	TTCGAA	1 cut(s)	307
Bsp143I	GATC	2 cut(s)	235, 362
BspACI	CCGC	2 cut(s)	56, 186
BspANI	GGCC	2 cut(s)	157, 355
BspLI	GGNNCC	1 cut(s)	181
BspT104I	TTCGAA	1 cut(s)	307
BspT107I	GGYRCC	1 cut(s)	179
BssECI	CCNNGG	3 cut(s)	175, 245, 277
BssMI	GATC	2 cut(s)	235, 362
BssNI	GRCGYC	2 cut(s)	180, 346
BssT1I	CCWWGG	3 cut(s)	175, 245, 277
Bst2UI	CCWGG	1 cut(s)	320
Bst6I	CTCTTC	1 cut(s)	115
BstACI	GRCGYC	2 cut(s)	180, 346
BstBI	TTCGAA	1 cut(s)	307
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	2 cut(s)	238, 365
BstMBI	GATC	2 cut(s)	235, 362
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstNI	CCWGG	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	318
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BsuRI	GGCC	2 cut(s)	157, 355
BtgZI	GCGATG	1 cut(s)	196
BtsI	GCAGTG	2 cut(s)	21, 28
BtsIMutI	CAGTG	2 cut(s)	21, 28
CfoI	GCGC	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	354
CviJI	RGCY	6 cut(s)	86, 157, 250, 282, 323, 355
CviKI_1	RGCY	6 cut(s)	86, 157, 250, 282, 323, 355
DinI	GGCGCC	1 cut(s)	181
DpnI	GATC	2 cut(s)	237, 364
DpnII	GATC	2 cut(s)	235, 362
DriI	GACNNNNNGTC	1 cut(s)	345
EaeI	YGGCCR	1 cut(s)	155
Eam1104I	CTCTTC	1 cut(s)	115
Eam1105I	GACNNNNNGTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	115
EciI	GGCGGA	1 cut(s)	175
Eco130I	CCWWGG	3 cut(s)	175, 245, 277
EcoRII	CCWGG	1 cut(s)	318
EcoT14I	CCWWGG	3 cut(s)	175, 245, 277
EgeI	GGCGCC	1 cut(s)	181
EheI	GGCGCC	1 cut(s)	181
ErhI	CCWWGG	3 cut(s)	175, 245, 277
FaiI	YATR	4 cut(s)	14, 146, 316, 351
FspBI	CTAG	1 cut(s)	397
GlaI	GCGC	1 cut(s)	181
GsaI	CCCAGC	1 cut(s)	387
HaeII	RGCGCY	1 cut(s)	183
HaeIII	GGCC	2 cut(s)	157, 355
HapII	CCGG	1 cut(s)	294
HhaI	GCGC	1 cut(s)	182
Hin1I	GRCGYC	2 cut(s)	180, 346
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HinfI	GANTC	3 cut(s)	5, 297, 368
HpaII	CCGG	1 cut(s)	294
HphI	GGTGA	4 cut(s)	45, 247, 253, 265
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	3 cut(s)	233, 367, 373
Hpy188III	TCNNGA	4 cut(s)	137, 193, 289, 337
Hpy8I	GTNNAC	1 cut(s)	9
HpyAV	CCTTC	4 cut(s)	70, 74, 238, 274
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	1 cut(s)	314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpySE526I	ACGT	1 cut(s)	346
Hsp92I	GRCGYC	2 cut(s)	180, 346
HspAI	GCGC	1 cut(s)	180
KasI	GGCGCC	1 cut(s)	179
Kzo9I	GATC	2 cut(s)	235, 362
LpnPI	CCDG	5 cut(s)	150, 305, 307, 332, 355
MaeI	CTAG	1 cut(s)	397
MaeII	ACGT	1 cut(s)	346
MalI	GATC	2 cut(s)	237, 364
MboI	GATC	2 cut(s)	235, 362
MboII	GAAGA	4 cut(s)	95, 102, 259, 262
MflI	RGATCY	1 cut(s)	235
MlsI	TGGCCA	1 cut(s)	157
MluCI	AATT	3 cut(s)	115, 302, 309
MluNI	TGGCCA	1 cut(s)	157
Mly113I	GGCGCC	1 cut(s)	180
MlyI	GAGTC	3 cut(s)	14, 291, 362
MnlI	CCTC	9 cut(s)	54, 57, 61, 78, 81, 133, 193, 200, 269
Mox20I	TGGCCA	1 cut(s)	157
MscI	TGGCCA	1 cut(s)	157
MseI	TTAA	2 cut(s)	17, 119
MslI	CAYNNNNRTG	2 cut(s)	149, 197
Msp20I	TGGCCA	1 cut(s)	157
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	1 cut(s)	320
MvaI	CCWGG	1 cut(s)	320
MwoI	GCNNNNNNNGC	1 cut(s)	320
NarI	GGCGCC	1 cut(s)	180
NdeII	GATC	2 cut(s)	235, 362
NlaIV	GGNNCC	1 cut(s)	181
NspV	TTCGAA	1 cut(s)	307
PleI	GAGTC	3 cut(s)	13, 291, 362
PluTI	GGCGCC	1 cut(s)	183
PpsI	GAGTC	3 cut(s)	13, 291, 362
Psp6I	CCWGG	1 cut(s)	318
PspFI	CCCAGC	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	318
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	354
PsuI	RGATCY	1 cut(s)	235
RseI	CAYNNNNRTG	2 cut(s)	149, 197
SaqAI	TTAA	2 cut(s)	17, 119
Sau3AI	GATC	2 cut(s)	235, 362
Sau96I	GGNCC	1 cut(s)	354
SchI	GAGTC	3 cut(s)	14, 291, 362
ScrFI	CCNGG	1 cut(s)	320
SetI	ASST	5 cut(s)	125, 230, 266, 349, 398
SfoI	GGCGCC	1 cut(s)	181
SfuI	TTCGAA	1 cut(s)	307
SmiMI	CAYNNNNRTG	2 cut(s)	149, 197
Sse9I	AATT	3 cut(s)	115, 302, 309
SsiI	CCGC	2 cut(s)	56, 186
SspDI	GGCGCC	1 cut(s)	179
SspMI	CTAG	1 cut(s)	397
StyD4I	CCNGG	1 cut(s)	318
StyI	CCWWGG	3 cut(s)	175, 245, 277
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	2 cut(s)	80, 307
TasI	AATT	3 cut(s)	115, 302, 309
Tru1I	TTAA	2 cut(s)	17, 119
Tru9I	TTAA	2 cut(s)	17, 119
TscAI	CASTG	2 cut(s)	28, 35
TspDTI	ATGAA	1 cut(s)	274
TspRI	CASTG	2 cut(s)	28, 35
XapI	RAATTY	1 cut(s)	115
XspI	CTAG	1 cut(s)	397
ZraI	GACGTC	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.