Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00000461

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

101784 .. 102632

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGTCGATACTACGAATAGCCTCTCTCTTCAGTTCCAGCTCGAGCTCCTCCCTCTTATCCTCAAAAAAGGACTGGATTGCATCCGTGGGCCTGATGCCGATGCAATGGGGGTTCCGGGAGAGCTCATATTCCATAATACGCGCACATTCGTGCTTGAGTTCCCGGATAAAAATATCCCGGGATTCCGCTTCGAGCAAGCAATTATATTCCGGTAATTTCTCCGACATTATTTTCTATCGCCACATCAAGGTGACAGGATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACACCTCGCGTCTCACCCCCCCCCGGAGCATATAGACCCACCCGATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000313 GO:0000314 GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0031974 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048027 GO:0065003 GO:0070013 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0098798 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_A_bac Ribosomal_S11

Protein Analysis

121

Amino Acids

13.38

Weight (kDa)

9.22

Isoelectric Point (pI)

57.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	141, 320
AciI	CCGC	1 cut(s)	186
AcuI	CTGAAG	1 cut(s)	13
AfaI	GTAC	1 cut(s)	280
AfiI	CCNNNNNNNGG	2 cut(s)	247, 334
AleI	CACNNNNGTG	1 cut(s)	148
AluBI	AGCT	3 cut(s)	39, 45, 123
AluI	AGCT	3 cut(s)	39, 45, 123
Alw21I	GWGCWC	2 cut(s)	47, 125
Alw26I	GTCTC	1 cut(s)	327
Ama87I	CYCGRG	2 cut(s)	40, 177
AoxI	GGCC	2 cut(s)	88, 270
AspLEI	GCGC	3 cut(s)	143, 296, 310
AspS9I	GGNCC	2 cut(s)	88, 271
AsuC2I	CCSGG	5 cut(s)	116, 163, 178, 179, 335
AsuHPI	GGTGA	2 cut(s)	262, 317
AsuII	TTCGAA	1 cut(s)	261
AvaI	CYCGRG	2 cut(s)	40, 177
BanII	GRGCYC	2 cut(s)	47, 125
Bbv12I	GWGCWC	2 cut(s)	47, 125
BcnI	CCSGG	5 cut(s)	116, 163, 178, 179, 335
BcoDI	GTCTC	1 cut(s)	327
Bme1390I	CCNGG	5 cut(s)	116, 163, 178, 179, 335
BmeT110I	CYCGRG	2 cut(s)	40, 177
BmgT120I	GGNCC	2 cut(s)	88, 271
BmiI	GGNNCC	1 cut(s)	113
BmrFI	CCNGG	5 cut(s)	116, 163, 178, 179, 335
BmsI	GCATC	4 cut(s)	84, 89, 90, 281
Bpu14I	TTCGAA	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	175
BpuMI	CCSGG	5 cut(s)	116, 163, 178, 179, 335
Bsa29I	ATCGAT	1 cut(s)	358
BsaJI	CCNNGG	3 cut(s)	84, 177, 333
BsaWI	WCCGGW	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 334
Bse1I	ACTGG	1 cut(s)	77
Bse3DI	GCAATG	1 cut(s)	110
BseCI	ATCGAT	1 cut(s)	358
BseDI	CCNNGG	3 cut(s)	84, 177, 333
BseGI	GGATG	1 cut(s)	80
BseLI	CCNNNNNNNGG	2 cut(s)	247, 334
BseMI	GCAATG	1 cut(s)	110
BseNI	ACTGG	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	37
Bsh1236I	CGCG	2 cut(s)	141, 320
Bsh1285I	CGRYCG	1 cut(s)	358
BshFI	GGCC	2 cut(s)	90, 272
BshVI	ATCGAT	1 cut(s)	358
BsiEI	CGRYCG	1 cut(s)	358
BsiHKAI	GWGCWC	2 cut(s)	47, 125
BsiHKCI	CYCGRG	2 cut(s)	40, 177
BsiSI	CCGG	5 cut(s)	115, 163, 178, 210, 335
BslI	CCNNNNNNNGG	2 cut(s)	247, 334
BsmAI	GTCTC	1 cut(s)	327
BsmBI	CGTCTC	1 cut(s)	327
BsnI	GGCC	2 cut(s)	90, 272
BsoBI	CYCGRG	2 cut(s)	40, 177
Bsp119I	TTCGAA	1 cut(s)	261
Bsp1286I	GDGCHC	2 cut(s)	47, 125
Bsp143I	GATC	1 cut(s)	355
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	2 cut(s)	90, 272
BspDI	ATCGAT	1 cut(s)	358
BspFNI	CGCG	2 cut(s)	141, 320
BspLI	GGNNCC	1 cut(s)	113
BspT104I	TTCGAA	1 cut(s)	261
BsrDI	GCAATG	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	3 cut(s)	84, 177, 333
BssMI	GATC	1 cut(s)	355
Bst6I	CTCTTC	1 cut(s)	32
BstBI	TTCGAA	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	197
BstDSI	CCRYGG	1 cut(s)	84
BstF5I	GGATG	1 cut(s)	80
BstFNI	CGCG	2 cut(s)	141, 320
BstHHI	GCGC	3 cut(s)	143, 296, 310
BstKTI	GATC	1 cut(s)	358
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	1 cut(s)	355
BstMCI	CGRYCG	1 cut(s)	358
BstSCI	CCNGG	5 cut(s)	114, 161, 176, 177, 333
BstUI	CGCG	2 cut(s)	141, 320
Bsu15I	ATCGAT	1 cut(s)	358
BsuRI	GGCC	2 cut(s)	90, 272
BsuTUI	ATCGAT	1 cut(s)	358
BtgI	CCRYGG	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	80
Cac8I	GCNNGC	1 cut(s)	197
CfoI	GCGC	3 cut(s)	143, 296, 310
Cfr13I	GGNCC	2 cut(s)	88, 271
Cfr9I	CCCGGG	1 cut(s)	177
ClaI	ATCGAT	1 cut(s)	358
CseI	GACGC	1 cut(s)	309
Csp6I	GTAC	1 cut(s)	279
CviJI	RGCY	6 cut(s)	20, 39, 45, 90, 123, 272
CviKI_1	RGCY	6 cut(s)	20, 39, 45, 90, 123, 272
CviQI	GTAC	1 cut(s)	279
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Ecl136II	GAGCTC	2 cut(s)	45, 123
Eco24I	GRGCYC	2 cut(s)	47, 125
Eco53kI	GAGCTC	2 cut(s)	45, 123
Eco57I	CTGAAG	1 cut(s)	13
Eco88I	CYCGRG	2 cut(s)	40, 177
EcoICRI	GAGCTC	2 cut(s)	45, 123
EcoT38I	GRGCYC	2 cut(s)	47, 125
Esp3I	CGTCTC	1 cut(s)	327
FaiI	YATR	6 cut(s)	127, 134, 205, 269, 342, 344
FokI	GGATG	1 cut(s)	67
FriOI	GRGCYC	2 cut(s)	47, 125
GlaI	GCGC	3 cut(s)	142, 295, 309
HaeIII	GGCC	2 cut(s)	90, 272
HapII	CCGG	5 cut(s)	115, 163, 178, 210, 335
HgaI	GACGC	1 cut(s)	309
HhaI	GCGC	3 cut(s)	143, 296, 310
Hin6I	GCGC	3 cut(s)	141, 294, 308
HinP1I	GCGC	3 cut(s)	141, 294, 308
HinfI	GANTC	2 cut(s)	182, 258
HpaII	CCGG	5 cut(s)	115, 163, 178, 210, 335
HphI	GGTGA	2 cut(s)	262, 317
Hpy188I	TCNGA	1 cut(s)	223
HpyCH4V	TGCA	2 cut(s)	80, 103
HspAI	GCGC	3 cut(s)	141, 294, 308
Kzo9I	GATC	1 cut(s)	355
LmnI	GCTCC	2 cut(s)	50, 337
LweI	GCATC	4 cut(s)	84, 89, 90, 281
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	1 cut(s)	357
MboI	GATC	1 cut(s)	355
MboII	GAAGA	1 cut(s)	19
MhlI	GDGCHC	2 cut(s)	47, 125
MluCI	AATT	2 cut(s)	200, 214
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	6 cut(s)	31, 58, 62, 70, 284, 326
MslI	CAYNNNNRTG	2 cut(s)	148, 248
MspI	CCGG	5 cut(s)	115, 163, 178, 210, 335
MspR9I	CCNGG	5 cut(s)	116, 163, 178, 179, 335
MvnI	CGCG	2 cut(s)	141, 320
NciI	CCSGG	5 cut(s)	116, 163, 178, 179, 335
NdeII	GATC	1 cut(s)	355
NlaIV	GGNNCC	1 cut(s)	113
NmuCI	GTSAC	1 cut(s)	250
NspV	TTCGAA	1 cut(s)	261
OliI	CACNNNNGTG	1 cut(s)	148
PaeR7I	CTCGAG	1 cut(s)	40
PfeI	GAWTC	2 cut(s)	182, 258
PfoI	TCCNGGA	2 cut(s)	114, 161
Ple19I	CGATCG	1 cut(s)	358
Psp124BI	GAGCTC	2 cut(s)	47, 125
PspN4I	GGNNCC	1 cut(s)	113
PspPI	GGNCC	2 cut(s)	88, 271
PspXI	VCTCGAGB	1 cut(s)	40
PvuI	CGATCG	1 cut(s)	358
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
RseI	CAYNNNNRTG	2 cut(s)	148, 248
SacI	GAGCTC	2 cut(s)	47, 125
Sau3AI	GATC	1 cut(s)	355
Sau96I	GGNCC	2 cut(s)	88, 271
ScrFI	CCNGG	5 cut(s)	116, 163, 178, 179, 335
SduI	GDGCHC	2 cut(s)	47, 125
SetI	ASST	6 cut(s)	41, 47, 125, 252, 268, 318
SfaNI	GCATC	4 cut(s)	84, 89, 90, 281
Sfr274I	CTCGAG	1 cut(s)	40
SfuI	TTCGAA	1 cut(s)	261
SlaI	CTCGAG	1 cut(s)	40
SmaI	CCCGGG	1 cut(s)	179
SmiMI	CAYNNNNRTG	2 cut(s)	148, 248
SmlI	CTYRAG	2 cut(s)	40, 154
SmoI	CTYRAG	2 cut(s)	40, 154
Sse9I	AATT	2 cut(s)	200, 214
SsiI	CCGC	1 cut(s)	186
SstI	GAGCTC	2 cut(s)	47, 125
StyD4I	CCNGG	5 cut(s)	114, 161, 176, 177, 333
TaqI	TCGA	5 cut(s)	5, 41, 191, 261, 358
TasI	AATT	2 cut(s)	200, 214
TfiI	GAWTC	2 cut(s)	182, 258
TseFI	GTSAC	1 cut(s)	250
Tsp45I	GTSAC	1 cut(s)	250
TspGWI	ACGGA	1 cut(s)	73
TspMI	CCCGGG	1 cut(s)	177
XhoI	CTCGAG	1 cut(s)	40
XmaI	CCCGGG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.