pycom5153684g00090

Blue copper protein-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012527_4311101_to_5153684
N/A
Physical Location & Seq
Forward (+)
206670 .. 210648
3979 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 261 bp
ATGGAGTTATTAATATTCCTACAGAGAAAGTCCAGCAGCAGCAGCTTGTGTTTTCTTCTTCTTCTTCTTCTTGTGTTTTCGTTTTCAGGAATATCAGTTGTTGAAGGTTACAAGAATTACACAGTGGGGGACTCTTCCGGTTGGTACGCAGCTGTTAACTATCAGAAATGGGCTGACGCCAAGACATTCAGCTTGGGAGATTTTCTAATAGAGTTTTTAATACGGACACCAACCACTCGGTTGTGCAAACATATAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

87

Amino Acids

9.75

Weight (kDa)

8.66

Isoelectric Point (pI)

35.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 1 cut(s) 146
AgsI TTSAA 1 cut(s) 104
AluBI AGCT 3 cut(s) 45, 152, 192
AluI AGCT 3 cut(s) 45, 152, 192
ApeKI GCWGC 4 cut(s) 36, 39, 42, 149
AseI ATTAAT 1 cut(s) 11
BbvI GCAGC 4 cut(s) 48, 51, 54, 161
BfmI CTRYAG 1 cut(s) 20
BisI GCNGC 4 cut(s) 37, 40, 43, 150
BlsI GCNGC 4 cut(s) 38, 41, 44, 151
BsaHI GRCGYC 1 cut(s) 177
BsaWI WCCGGW 1 cut(s) 137
BseXI GCAGC 4 cut(s) 48, 51, 54, 161
BsiSI CCGG 1 cut(s) 138
BslFI GGGAC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 143
BssNI GRCGYC 1 cut(s) 177
Bst4CI ACNGT 1 cut(s) 124
Bst6I CTCTTC 1 cut(s) 139
BstACI GRCGYC 1 cut(s) 177
BstMWI GCNNNNNNNGC 1 cut(s) 42
BstSFI CTRYAG 1 cut(s) 20
BstV1I GCAGC 4 cut(s) 48, 51, 54, 161
BtsIMutI CAGTG 1 cut(s) 129
CseI GACGC 1 cut(s) 185
Csp6I GTAC 1 cut(s) 145
CviJI RGCY 4 cut(s) 45, 152, 173, 192
CviKI_1 RGCY 4 cut(s) 45, 152, 173, 192
CviQI GTAC 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
FaiI YATR 2 cut(s) 252, 254
FaqI GGGAC 1 cut(s) 143
Fnu4HI GCNGC 4 cut(s) 37, 40, 43, 150
Fsp4HI GCNGC 4 cut(s) 37, 40, 43, 150
GluI GCNGC 4 cut(s) 37, 40, 43, 150
HapII CCGG 1 cut(s) 138
HgaI GACGC 1 cut(s) 185
Hin1I GRCGYC 1 cut(s) 177
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 1 cut(s) 131
HpaI GTTAAC 1 cut(s) 157
HpaII CCGG 1 cut(s) 138
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 1 cut(s) 87
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 98
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4V TGCA 1 cut(s) 246
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
Hsp92I GRCGYC 1 cut(s) 177
KspAI GTTAAC 1 cut(s) 157
LpnPI CCDG 3 cut(s) 46, 72, 151
Lsp1109I GCAGC 4 cut(s) 48, 51, 54, 161
MaeIII GTNAC 1 cut(s) 107
MboII GAAGA 6 cut(s) 47, 50, 53, 56, 59, 126
MluCI AATT 1 cut(s) 115
MlyI GAGTC 1 cut(s) 125
MseI TTAA 3 cut(s) 11, 156, 218
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 42
PkrI GCNGC 4 cut(s) 38, 41, 44, 151
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PshBI ATTAAT 1 cut(s) 11
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SaqAI TTAA 3 cut(s) 11, 156, 218
SatI GCNGC 4 cut(s) 37, 40, 43, 150
SchI GAGTC 1 cut(s) 125
SetI ASST 4 cut(s) 47, 109, 154, 194
SfcI CTRYAG 1 cut(s) 20
SgeI CNNG 9 cut(s) 45, 58, 83, 99, 124, 150, 193, 205, 249
Sse9I AATT 1 cut(s) 115
SspI AATATT 1 cut(s) 15
TaaI ACNGT 1 cut(s) 124
TasI AATT 1 cut(s) 115
Tru1I TTAA 3 cut(s) 11, 156, 218
Tru9I TTAA 3 cut(s) 11, 156, 218
TscAI CASTG 1 cut(s) 129
TseI GCWGC 4 cut(s) 36, 39, 42, 149
TspGWI ACGGA 1 cut(s) 238
TspRI CASTG 1 cut(s) 129
VspI ATTAAT 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.