pycom520g00270

ion channel POLLUX-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_520
N/A
Physical Location & Seq
Forward (+)
230246 .. 232849
2604 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2028 bp
ATGGTAGACTTGTGTATAAATATGCTTCTCACACATAGTTCCAAAACAATTGAGAAAACAAACATGTCCAAGTTCCCACATGAAACCAAGGGCTTTAACGTAGAGTTCCACGGGTGGTACACCATGGAACCTCATCCGCTTTGGGGGTTGGCGAGGGCAAATCCTACATCATCATTTAGCTCTGTGGACTCGAAGACGCAGCTAAAAAGTATAGATCAAGTATACGGAAGACTCGACTATGAGATGGGCGTCACCAAGTATTGGAACCACAAGCTAATGAAGGCAGAAAAGAGCTTGTGGACCTCAACGGTGAAGCCAACGAAGATCGATCTACCATGTAATCCTAAAATTTTGAATTGTTCCAGAAGCGTCGGGGCCATATTGAGTCGTATGAGCGTTCTTAGGAGGCTGACACCTTATGTACGCAACCTGCACAACTTATGCATGTCATATGCACACATTGGGAAATTTTTTAAATTATTTCCACACATTACTGTAAACCCAGTCGACATTAGCATGTTGCTCTTGGGATTCTCTTCAAGACTAAGCGCCAAAGGAGACAAGACTTACCCCATTATTTTAGGGTTTCATATCTTCGAAAATTGGATAGCAAATTTTCTCTTCCATGCTTTGTTTCTAAATGGATTGGTTGGCAAACAAGTTAGCAAATTGACAAGACAAGGAAGATGTGGTGTACATGACCCTCATGTCTTTTCCCAATGTTTAATAATAATATATTACAAAAGTAGTGGGCTTCAATTAATGTTTTGTTTGGTTTTCCTATTCCAGATTATATGTTTTCAATATTCAAGACGCAGCATGCAGTGTGCATATCATGACCATAGGAGATCATTCAATGTGCTTAGTGTGTACATAGTATGTGGATATAGTGTTCATGCATTGTGGTATTGGGTGGTTTTGTTTTTGAATTATTACGTACATAAGAAGTTAACTTTTTGTCATGGGAAGTTGCATCGTTTGAATGACCTTTTTTGTGATGGGAAGTTGCACCGAATGACCCTTATTCTCCATCTATTTAAGTTGTCTTCCTCCCAAAAAAAAAACAAAAAAAAAAAAAAAACAAAAGTTGAAAATGATGAAGAAAGGCCGCACCACCTCTTCCTCTATGCAATATGGCTTTTATGCCTTCTGTTTGTTCAACTAATTCCCATACTTGGTTATTCGTCATCAAACTCAATTCACTCTTCATCGCCTCTATCCACTTTTAATGGATCATTAAACTCTGGAAGGTCAGTGTCAACCTCTGTTAAATATATGAAATCACTTAGGGTTGTAGGATTTCGAACCCTAGATGACCTTCTCACATTTGCTACATTTGCATCCATGGAACTCATCCTCAATAACATCTTGTACAAATGCATTATTAGGCAGTTCAGTGTCATGTCCAATCTTAGGTTCATTGCATGGTTCATCAGAATCGATGGTTCCCATATTCTCAGTTGCTATAGTTATCGGTGCCATCATCTTTGTGTTACAATCAACTTCCTCAATTGTAGCTTCTTTGTCATTAGTTTCTTCTTCAAAAACAAAATCATCAACCCTTGTCTCATAATCAATACTTGCATCAGACTCCATGAAGACTACTTTTCCAGTTTCGACAATTCTAGTAGTTTGATTAGGGCAATAGAATCGAAAACCCTTCGATCTTTCAACATATACAATAAATTAACAACTGACAATCTTGAGATTGAGTCTTGTAGCCTGGATTATAGATATTTGCCTTTGCCCTACAACCCCATACATGTAGGTGGTTCAAACTCAATTTTGAAGGTACCCTATTTAATATATAATTTGCCTACTTCACCCCACAAACAACTAGGCAAGTTAGTTCTACAAATCATGCTCCTCACCATGTCCATGAGAGTTCTATTCCTCTTCTCGGCCACTCCGTTTTGCTCCAGAGTACCTGGTGTGGTATATTGGGCTACTATTCCATATTCTTGCATAAATAATGCAAAGGGTCCAGGATTTCTACGAATTTCAGTATATCTACCATATTCCAATTGA

Protein Analysis

676

Amino Acids

77.98

Weight (kDa)

9.59

Isoelectric Point (pI)

43.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 707
Acc36I ACCTGC 1 cut(s) 438
Acc65I GGTACC 1 cut(s) 1792
AccB1I GGYRCC 2 cut(s) 1476, 1792
AccB7I CCANNNNNTGG 1 cut(s) 261
AccI GTMKAC 3 cut(s) 6, 222, 507
AciI CCGC 2 cut(s) 137, 1109
AclWI GGATC 1 cut(s) 1240
AcoI YGGCCR 1 cut(s) 1902
AcsI RAATTY 4 cut(s) 348, 467, 613, 1998
AcyI GRCGYC 1 cut(s) 249
AfaI GTAC 8 cut(s) 119, 423, 696, 872, 939, 1373, 1794, 1926
AfiI CCNNNNNNNGG 5 cut(s) 143, 261, 1175, 1413, 1900
AflIII ACRYGT 2 cut(s) 63, 1762
AjnI CCWGG 3 cut(s) 1722, 1927, 1984
AjuI GAANNNNNNNTTGG 2 cut(s) 1400, 1432
AloI GAACNNNNNNTCC 2 cut(s) 876, 908
AluBI AGCT 5 cut(s) 180, 202, 274, 294, 1518
AluI AGCT 5 cut(s) 180, 202, 274, 294, 1518
Alw26I GTCTC 2 cut(s) 552, 1571
AlwI GGATC 1 cut(s) 1240
AoxI GGCC 3 cut(s) 375, 1106, 1902
ApeKI GCWGC 2 cut(s) 199, 816
ApoI RAATTY 4 cut(s) 348, 467, 613, 1998
AseI ATTAAT 1 cut(s) 761
Asp718I GGTACC 1 cut(s) 1792
AspLEI GCGC 1 cut(s) 551
AspS9I GGNCC 3 cut(s) 300, 375, 1982
AsuHPI GGTGA 4 cut(s) 244, 322, 1815, 1861
AsuII TTCGAA 2 cut(s) 597, 1303
AvaII GGWCC 2 cut(s) 300, 1982
BanI GGYRCC 2 cut(s) 1476, 1792
BbsI GAAGAC 4 cut(s) 200, 235, 1038, 1605
BbvI GCAGC 2 cut(s) 211, 828
BccI CCATC 5 cut(s) 238, 992, 1038, 1436, 1488
BcgI CGANNNNNNTGC 2 cut(s) 1632, 1666
BciT130I CCWGG 3 cut(s) 1724, 1929, 1986
BcoDI GTCTC 2 cut(s) 552, 1571
BfaI CTAG 3 cut(s) 1310, 1626, 1838
BfmI CTRYAG 1 cut(s) 1465
BfoI RGCGCY 1 cut(s) 552
BfuAI ACCTGC 1 cut(s) 438
BisI GCNGC 3 cut(s) 200, 817, 1109
BlsI GCNGC 3 cut(s) 201, 818, 1110
Bme1390I CCNGG 3 cut(s) 1724, 1929, 1986
Bme18I GGWCC 2 cut(s) 300, 1982
BmgT120I GGNCC 3 cut(s) 300, 375, 1982
BmiI GGNNCC 7 cut(s) 129, 266, 376, 1447, 1478, 1794, 1983
BmrFI CCNGG 3 cut(s) 1724, 1929, 1986
BmrI ACTGGG 1 cut(s) 497
BmsI GCATC 3 cut(s) 982, 1349, 1593
BmuI ACTGGG 1 cut(s) 497
BpiI GAAGAC 4 cut(s) 200, 235, 1038, 1605
BpmI CTGGAG 1 cut(s) 1903
Bpu14I TTCGAA 2 cut(s) 597, 1303
BpuEI CTTGAG 1 cut(s) 1724
Bsa29I ATCGAT 2 cut(s) 327, 1440
BsaAI YACGTR 1 cut(s) 937
BsaHI GRCGYC 1 cut(s) 249
BsaJI CCNNGG 4 cut(s) 87, 109, 123, 1344
Bsc4I CCNNNNNNNGG 5 cut(s) 143, 261, 1175, 1413, 1900
Bse1I ACTGG 2 cut(s) 503, 1611
Bse3DI GCAATG 1 cut(s) 1419
BseBI CCWGG 3 cut(s) 1724, 1929, 1986
BseCI ATCGAT 2 cut(s) 327, 1440
BseDI CCNNGG 4 cut(s) 87, 109, 123, 1344
BseGI GGATG 3 cut(s) 133, 1340, 1353
BseLI CCNNNNNNNGG 5 cut(s) 143, 261, 1175, 1413, 1900
BseMI GCAATG 1 cut(s) 1419
BseMII CTCAG 1 cut(s) 1471
BseNI ACTGG 2 cut(s) 503, 1611
BseRI GAGGAG 1 cut(s) 1856
BseXI GCAGC 2 cut(s) 211, 828
BsgI GTGCAG 1 cut(s) 416
BshFI GGCC 3 cut(s) 377, 1108, 1904
BshNI GGYRCC 2 cut(s) 1476, 1792
BshVI ATCGAT 2 cut(s) 327, 1440
BslI CCNNNNNNNGG 5 cut(s) 143, 261, 1175, 1413, 1900
BsmAI GTCTC 2 cut(s) 552, 1571
BsnI GGCC 3 cut(s) 377, 1108, 1904
Bsp119I TTCGAA 2 cut(s) 597, 1303
Bsp1407I TGTACA 3 cut(s) 694, 870, 1371
Bsp143I GATC 6 cut(s) 214, 324, 328, 848, 1232, 1664
Bsp19I CCATGG 2 cut(s) 123, 1344
BspACI CCGC 2 cut(s) 137, 1109
BspANI GGCC 3 cut(s) 377, 1108, 1904
BspCNI CTCAG 1 cut(s) 1470
BspDI ATCGAT 2 cut(s) 327, 1440
BspHI TCATGA 1 cut(s) 835
BspLI GGNNCC 7 cut(s) 129, 266, 376, 1447, 1478, 1794, 1983
BspMI ACCTGC 1 cut(s) 438
BspPI GGATC 1 cut(s) 1240
BspT104I TTCGAA 2 cut(s) 597, 1303
BspT107I GGYRCC 2 cut(s) 1476, 1792
BsrDI GCAATG 1 cut(s) 1419
BsrGI TGTACA 3 cut(s) 694, 870, 1371
BsrI ACTGG 2 cut(s) 503, 1611
BssECI CCNNGG 4 cut(s) 87, 109, 123, 1344
BssMI GATC 6 cut(s) 214, 324, 328, 848, 1232, 1664
BssNAI GTATAC 1 cut(s) 223
BssNI GRCGYC 1 cut(s) 249
BssT1I CCWWGG 3 cut(s) 87, 123, 1344
Bst1107I GTATAC 1 cut(s) 223
Bst2UI CCWGG 3 cut(s) 1724, 1929, 1986
Bst4CI ACNGT 2 cut(s) 310, 496
Bst6I CTCTTC 5 cut(s) 541, 626, 1124, 1210, 1901
BstACI GRCGYC 1 cut(s) 249
BstAUI TGTACA 3 cut(s) 694, 870, 1371
BstBAI YACGTR 1 cut(s) 937
BstBI TTCGAA 2 cut(s) 597, 1303
BstC8I GCNNGC 1 cut(s) 821
BstDEI CTNAG 6 cut(s) 401, 545, 863, 1286, 1412, 1457
BstDSI CCRYGG 3 cut(s) 109, 123, 1344
BstF5I GGATG 3 cut(s) 133, 1340, 1353
BstH2I RGCGCY 1 cut(s) 552
BstHHI GCGC 1 cut(s) 551
BstKTI GATC 6 cut(s) 217, 327, 331, 851, 1235, 1667
BstMAI GTCTC 2 cut(s) 552, 1571
BstMBI GATC 6 cut(s) 214, 324, 328, 848, 1232, 1664
BstMWI GCNNNNNNNGC 1 cut(s) 1337
BstNI CCWGG 3 cut(s) 1724, 1929, 1986
BstNSI RCATGY 5 cut(s) 67, 448, 520, 823, 1766
BstSCI CCNGG 3 cut(s) 1722, 1927, 1984
BstSFI CTRYAG 1 cut(s) 1465
BstSNI TACGTA 1 cut(s) 937
BstV1I GCAGC 2 cut(s) 211, 828
BstV2I GAAGAC 4 cut(s) 200, 235, 1038, 1605
BstZ17I GTATAC 1 cut(s) 223
Bsu15I ATCGAT 2 cut(s) 327, 1440
BsuRI GGCC 3 cut(s) 377, 1108, 1904
BsuTUI ATCGAT 2 cut(s) 327, 1440
BtgI CCRYGG 3 cut(s) 109, 123, 1344
BtgZI GCGATG 1 cut(s) 1194
BtsCI GGATG 3 cut(s) 133, 1340, 1353
BtsI GCAGTG 1 cut(s) 830
BtsIMutI CAGTG 3 cut(s) 830, 1260, 1402
BveI ACCTGC 1 cut(s) 438
Cac8I GCNNGC 1 cut(s) 821
CciI TCATGA 1 cut(s) 835
CfoI GCGC 1 cut(s) 551
Cfr13I GGNCC 3 cut(s) 300, 375, 1982
ClaI ATCGAT 2 cut(s) 327, 1440
CseI GACGC 4 cut(s) 205, 238, 358, 822
CsiI ACCWGGT 1 cut(s) 1927
Csp6I GTAC 8 cut(s) 118, 422, 695, 871, 938, 1372, 1793, 1925
CspCI CAANNNNNGTGG 2 cut(s) 730, 765
CviQI GTAC 8 cut(s) 118, 422, 695, 871, 938, 1372, 1793, 1925
DdeI CTNAG 6 cut(s) 401, 545, 863, 1286, 1412, 1457
DpnI GATC 6 cut(s) 216, 326, 330, 850, 1234, 1666
DpnII GATC 6 cut(s) 214, 324, 328, 848, 1232, 1664
DraI TTTAAA 1 cut(s) 475
DrdI GACNNNNNNGTC 1 cut(s) 707
DseDI GACNNNNNNGTC 1 cut(s) 707
EaeI YGGCCR 1 cut(s) 1902
Eam1104I CTCTTC 5 cut(s) 541, 626, 1124, 1210, 1901
EarI CTCTTC 5 cut(s) 541, 626, 1124, 1210, 1901
Eco105I TACGTA 1 cut(s) 937
Eco130I CCWWGG 3 cut(s) 87, 123, 1344
Eco47I GGWCC 2 cut(s) 300, 1982
EcoRII CCWGG 3 cut(s) 1722, 1927, 1984
EcoT14I CCWWGG 3 cut(s) 87, 123, 1344
EcoT22I ATGCAT 3 cut(s) 446, 901, 1382
ErhI CCWWGG 3 cut(s) 87, 123, 1344
FauNDI CATATG 1 cut(s) 451
FblI GTMKAC 3 cut(s) 6, 222, 507
Fnu4HI GCNGC 3 cut(s) 200, 817, 1109
FokI GGATG 3 cut(s) 120, 1327, 1340
Fsp4HI GCNGC 3 cut(s) 200, 817, 1109
FspBI CTAG 3 cut(s) 1310, 1626, 1838
GlaI GCGC 1 cut(s) 550
GluI GCNGC 3 cut(s) 200, 817, 1109
GsuI CTGGAG 1 cut(s) 1903
HaeII RGCGCY 1 cut(s) 552
HaeIII GGCC 3 cut(s) 377, 1108, 1904
HgaI GACGC 4 cut(s) 205, 238, 358, 822
HhaI GCGC 1 cut(s) 551
Hin1I GRCGYC 1 cut(s) 249
Hin6I GCGC 1 cut(s) 549
HinP1I GCGC 1 cut(s) 549
HincII GTYRAC 3 cut(s) 508, 951, 1260
HindII GTYRAC 3 cut(s) 508, 951, 1260
HinfI GANTC 8 cut(s) 188, 231, 385, 531, 1437, 1590, 1649, 1712
HpaI GTTAAC 1 cut(s) 951
HphI GGTGA 4 cut(s) 244, 322, 1815, 1861
Hpy188I TCNGA 2 cut(s) 1436, 1589
Hpy188III TCNNGA 8 cut(s) 363, 540, 787, 810, 836, 1245, 1703, 1920
Hpy99I CGWCG 1 cut(s) 374
HpyAV CCTTC 6 cut(s) 274, 1157, 1242, 1328, 1670, 1783
HpyCH4III ACNGT 2 cut(s) 310, 496
HpyCH4IV ACGT 2 cut(s) 99, 936
HpyF10VI GCNNNNNNNGC 1 cut(s) 1337
HpyF3I CTNAG 6 cut(s) 401, 545, 863, 1286, 1412, 1457
HpySE526I ACGT 2 cut(s) 99, 936
Hsp92I GRCGYC 1 cut(s) 249
HspAI GCGC 1 cut(s) 549
KpnI GGTACC 1 cut(s) 1796
KspAI GTTAAC 1 cut(s) 951
Kzo9I GATC 6 cut(s) 214, 324, 328, 848, 1232, 1664
LmnI GCTCC 2 cut(s) 1869, 1922
Lsp1109I GCAGC 2 cut(s) 211, 828
LweI GCATC 3 cut(s) 982, 1349, 1593
MabI ACCWGGT 1 cut(s) 1927
MaeI CTAG 3 cut(s) 1310, 1626, 1838
MaeII ACGT 2 cut(s) 99, 936
MaeIII GTNAC 2 cut(s) 250, 1492
MalI GATC 6 cut(s) 216, 326, 330, 850, 1234, 1666
MboI GATC 6 cut(s) 214, 324, 328, 848, 1232, 1664
MfeI CAATTG 3 cut(s) 48, 1510, 2023
MlyI GAGTC 5 cut(s) 182, 225, 394, 1584, 1721
Mph1103I ATGCAT 3 cut(s) 446, 901, 1382
MslI CAYNNNNRTG 4 cut(s) 515, 1488, 1767, 1877
MspR9I CCNGG 3 cut(s) 1724, 1929, 1986
MunI CAATTG 3 cut(s) 48, 1510, 2023
MvaI CCWGG 3 cut(s) 1724, 1929, 1986
MwoI GCNNNNNNNGC 1 cut(s) 1337
NcoI CCATGG 2 cut(s) 123, 1344
NdeI CATATG 1 cut(s) 451
NdeII GATC 6 cut(s) 214, 324, 328, 848, 1232, 1664
NlaIV GGNNCC 7 cut(s) 129, 266, 376, 1447, 1478, 1794, 1983
NmeAIII GCCGAG 1 cut(s) 1880
NmuCI GTSAC 1 cut(s) 250
NsiI ATGCAT 3 cut(s) 446, 901, 1382
NspI RCATGY 5 cut(s) 67, 448, 520, 823, 1766
NspV TTCGAA 2 cut(s) 597, 1303
PaeI GCATGC 1 cut(s) 823
PagI TCATGA 1 cut(s) 835
PciI ACATGT 2 cut(s) 63, 1762
PcsI WCGNNNNNNNCGW 2 cut(s) 231, 1907
PfeI GAWTC 3 cut(s) 531, 1437, 1649
PflMI CCANNNNNTGG 1 cut(s) 261
PfoI TCCNGGA 1 cut(s) 1984
PkrI GCNGC 3 cut(s) 201, 818, 1110
PleI GAGTC 5 cut(s) 182, 225, 393, 1584, 1720
PpsI GAGTC 5 cut(s) 182, 225, 393, 1584, 1720
Ppu21I YACGTR 1 cut(s) 937
PscI ACATGT 2 cut(s) 63, 1762
PshBI ATTAAT 1 cut(s) 761
Psp6I CCWGG 3 cut(s) 1722, 1927, 1984
PspGI CCWGG 3 cut(s) 1722, 1927, 1984
PspN4I GGNNCC 7 cut(s) 129, 266, 376, 1447, 1478, 1794, 1983
PspPI GGNCC 3 cut(s) 300, 375, 1982
RsaI GTAC 8 cut(s) 119, 423, 696, 872, 939, 1373, 1794, 1926
RsaNI GTAC 8 cut(s) 118, 422, 695, 871, 938, 1372, 1793, 1925
RseI CAYNNNNRTG 4 cut(s) 515, 1488, 1767, 1877
SalI GTCGAC 1 cut(s) 506
SatI GCNGC 3 cut(s) 200, 817, 1109
Sau3AI GATC 6 cut(s) 214, 324, 328, 848, 1232, 1664
Sau96I GGNCC 3 cut(s) 300, 375, 1982
SchI GAGTC 5 cut(s) 182, 225, 394, 1584, 1721
ScrFI CCNGG 3 cut(s) 1724, 1929, 1986
SexAI ACCWGGT 1 cut(s) 1927
SfaNI GCATC 3 cut(s) 982, 1349, 1593
SfcI CTRYAG 1 cut(s) 1465
SfuI TTCGAA 2 cut(s) 597, 1303
SinI GGWCC 2 cut(s) 300, 1982
SmiMI CAYNNNNRTG 4 cut(s) 515, 1488, 1767, 1877
SmlI CTYRAG 1 cut(s) 1703
SmoI CTYRAG 1 cut(s) 1703
SnaBI TACGTA 1 cut(s) 937
SphI GCATGC 1 cut(s) 823
SsiI CCGC 2 cut(s) 137, 1109
SspI AATATT 1 cut(s) 806
SspMI CTAG 3 cut(s) 1310, 1626, 1838
StyD4I CCNGG 3 cut(s) 1722, 1927, 1984
StyI CCWWGG 3 cut(s) 87, 123, 1344
TaaI ACNGT 2 cut(s) 310, 496
TaiI ACGT 2 cut(s) 102, 939
TatI WGTACW 3 cut(s) 694, 870, 1371
TauI GCSGC 1 cut(s) 1111
TfiI GAWTC 3 cut(s) 531, 1437, 1649
TscAI CASTG 3 cut(s) 830, 1260, 1402
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 2 cut(s) 199, 816
Tsp45I GTSAC 1 cut(s) 250
TspGWI ACGGA 2 cut(s) 240, 1899
TspRI CASTG 3 cut(s) 830, 1260, 1402
Van91I CCANNNNNTGG 1 cut(s) 261
VpaK11BI GGWCC 2 cut(s) 300, 1982
VspI ATTAAT 1 cut(s) 761
XapI RAATTY 4 cut(s) 348, 467, 613, 1998
XceI RCATGY 5 cut(s) 67, 448, 520, 823, 1766
XmiI GTMKAC 3 cut(s) 6, 222, 507
XspI CTAG 3 cut(s) 1310, 1626, 1838
Zsp2I ATGCAT 3 cut(s) 446, 901, 1382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.