Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_520

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

430590 .. 431838

Gene Structure 1249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGTGCAAAGTTAGACTCACGACAAGAATGATACTTGGCAATAGCTTGGGGGGTACACATGTCCAATTCAGTGGAAGCCGATTGAACGGTAACTTTCCCCTTGTTCTTGAAGTTTGGGGCCTTAGTGGCAAGGGTTTGGCGCTTCTGGGTCAAATTTCCTCCGTTCGCATGGCCTCTGCTCTATTGACCTTGGGCCTGTGGCTGGGGCTGCCGTCCACGTCCACGGCTATGATGGGGTTTCCATCGGTTGTGGCTACTAAAATTAGTCGTATGTGGTTCAGATGGTTCTGCTTTTTAGTGAGAAGTAAATCAGAGATAAAATCTGAAAATTTGGTGAACTTTTGTGCCCTATATTGTTGTTGCAGGACAATATTGGTGGCATTGAAGTCTACAAACTTCAGACTTGCCTTCATTCACAGACTTAAAGTCTTGGAAGCGAATATGTTGTCAGTCGTGTCTTACTTCAGGCAAGTAAATGTCTTTCTGGCAATTGAAGCGATCAGCCAGAGCGAGCCAGAGGTGAGCGAGGTACTCGGTCTGCAGTGCATCATGGATATATCTTTAGATAAAGATCACAGCAATAGCATTCTGAGCTTCACTCTTTGCGGTAAGATGAAGCTTCACGTCTTGAACCCACTTCAAGTAGTTTCTTCCAAACACTTCCAAATTGGTAAAATCGAGCTTGTTCAAGTTCGACATGTCCCTAAAACAGAGAAACATTCGGGTTCTATAGACATGTATAGGTTTAATTTAAACATGAAAGCTTCGAGTTTCATGAGTGGAAACTACAGGTTCGATTTAGCTATCAACTTTCGATTCATATATAGGGTGCTTCAGAAACCCAAGGGTGAGTGCATCAGGACAACGAAAGATAGTCAATGGTTCATTGAAAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009267 GO:0009605 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0019932 GO:0019933 GO:0019935 GO:0023052 GO:0030587 GO:0031152 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0033554 GO:0035556 GO:0036211 GO:0040011 GO:0042221 GO:0042330 GO:0042493 GO:0042594 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045472 GO:0046677 GO:0048518 GO:0048519 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051409 GO:0051703 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0071704 GO:0090702 GO:0097327 GO:0098630 GO:0098743 GO:0099120 GO:0140096 GO:1901564 GO:1901654 GO:1901700 GO:1904643

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

300

Amino Acids

33.81

Weight (kDa)

9.83

Isoelectric Point (pI)

35.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	389
AciI	CCGC	1 cut(s)	606
AcsI	RAATTY	2 cut(s)	153, 328
AcuI	CTGAAG	3 cut(s)	382, 448, 818
AfaI	GTAC	2 cut(s)	55, 531
AfiI	CCNNNNNNNGG	1 cut(s)	202
AflIII	ACRYGT	3 cut(s)	58, 697, 735
AgsI	TTSAA	8 cut(s)	85, 110, 385, 494, 631, 641, 689, 890
AhdI	GACNNNNNGTC	1 cut(s)	425
AjiI	CACGTC	2 cut(s)	219, 625
AluBI	AGCT	6 cut(s)	45, 594, 619, 682, 764, 803
AluI	AGCT	6 cut(s)	45, 594, 619, 682, 764, 803
AoxI	GGCC	3 cut(s)	118, 171, 193
ApeKI	GCWGC	1 cut(s)	208
ApoI	RAATTY	2 cut(s)	153, 328
ArsI	GACNNNNNNTTYG	2 cut(s)	431, 463
AspLEI	GCGC	1 cut(s)	142
AspS9I	GGNCC	2 cut(s)	118, 193
AsuHPI	GGTGA	3 cut(s)	346, 532, 860
BaeGI	GKGCMC	1 cut(s)	349
BaeI	ACNNNNGTAYC	2 cut(s)	45, 78
BbvI	GCAGC	1 cut(s)	195
BccI	CCATC	3 cut(s)	226, 250, 276
BceAI	ACGGC	2 cut(s)	196, 240
BfmI	CTRYAG	3 cut(s)	539, 729, 787
BfoI	RGCGCY	1 cut(s)	143
BglI	GCCNNNNNGGC	1 cut(s)	126
BisI	GCNGC	1 cut(s)	209
BlsI	GCNGC	1 cut(s)	210
BmeRI	GACNNNNNGTC	1 cut(s)	425
BmgBI	CACGTC	2 cut(s)	219, 625
BmgT120I	GGNCC	2 cut(s)	118, 193
BmiI	GGNNCC	1 cut(s)	119
BmsI	GCATC	2 cut(s)	555, 864
BplI	GAGNNNNNCTC	2 cut(s)	583, 615
BsaBI	GATNNNNATC	1 cut(s)	570
BsaJI	CCNNGG	3 cut(s)	189, 222, 843
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse8I	GATNNNNATC	1 cut(s)	570
BseDI	CCNNGG	3 cut(s)	189, 222, 843
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseMII	CTCAG	1 cut(s)	581
BseSI	GKGCMC	1 cut(s)	349
BseXI	GCAGC	1 cut(s)	195
BseYI	CCCAGC	1 cut(s)	202
BshFI	GGCC	3 cut(s)	120, 173, 195
BslFI	GGGAC	1 cut(s)	686
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	686
BsmI	GAATGC	1 cut(s)	585
BsnI	GGCC	3 cut(s)	120, 173, 195
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp143I	GATC	2 cut(s)	498, 571
BspACI	CCGC	1 cut(s)	606
BspANI	GGCC	3 cut(s)	120, 173, 195
BspCNI	CTCAG	1 cut(s)	582
BspHI	TCATGA	1 cut(s)	774
BspLI	GGNNCC	1 cut(s)	119
BspMAI	CTGCAG	1 cut(s)	543
BssECI	CCNNGG	3 cut(s)	189, 222, 843
BssMI	GATC	2 cut(s)	498, 571
BssT1I	CCWWGG	2 cut(s)	189, 843
Bst4CI	ACNGT	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	512
BstDEI	CTNAG	2 cut(s)	122, 590
BstDSI	CCRYGG	1 cut(s)	222
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	2 cut(s)	501, 574
BstMBI	GATC	2 cut(s)	498, 571
BstMWI	GCNNNNNNNGC	4 cut(s)	126, 208, 494, 591
BstNSI	RCATGY	3 cut(s)	62, 701, 739
BstSFI	CTRYAG	3 cut(s)	539, 729, 787
BstSLI	GKGCMC	1 cut(s)	349
BstV1I	GCAGC	1 cut(s)	195
BstXI	CCANNNNNNTGG	1 cut(s)	71
BsuRI	GGCC	3 cut(s)	120, 173, 195
BtgI	CCRYGG	1 cut(s)	222
BtrI	CACGTC	2 cut(s)	219, 625
BtsI	GCAGTG	1 cut(s)	548
BtsIMutI	CAGTG	2 cut(s)	76, 548
Cac8I	GCNNGC	1 cut(s)	512
CciI	TCATGA	1 cut(s)	774
CfoI	GCGC	1 cut(s)	142
Cfr13I	GGNCC	2 cut(s)	118, 193
Csp6I	GTAC	2 cut(s)	54, 530
CspCI	CAANNNNNGTGG	2 cut(s)	357, 392
CviAII	CATG	7 cut(s)	59, 169, 550, 698, 736, 757, 775
CviQI	GTAC	2 cut(s)	54, 530
DdeI	CTNAG	2 cut(s)	122, 590
DpnI	GATC	2 cut(s)	500, 573
DpnII	GATC	2 cut(s)	498, 571
DraI	TTTAAA	1 cut(s)	753
DriI	GACNNNNNGTC	1 cut(s)	425
Eam1105I	GACNNNNNGTC	1 cut(s)	425
Eco130I	CCWWGG	2 cut(s)	189, 843
Eco57I	CTGAAG	3 cut(s)	382, 448, 818
EcoO109I	RGGNCCY	1 cut(s)	118
EcoT14I	CCWWGG	2 cut(s)	189, 843
ErhI	CCWWGG	2 cut(s)	189, 843
FaeI	CATG	7 cut(s)	62, 172, 553, 701, 739, 760, 778
FaqI	GGGAC	1 cut(s)	686
FatI	CATG	7 cut(s)	58, 168, 549, 697, 735, 756, 774
FblI	GTMKAC	1 cut(s)	389
Fnu4HI	GCNGC	1 cut(s)	209
Fsp4HI	GCNGC	1 cut(s)	209
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	1 cut(s)	209
GsaI	CCCAGC	1 cut(s)	206
HaeII	RGCGCY	1 cut(s)	143
HaeIII	GGCC	3 cut(s)	120, 173, 195
HhaI	GCGC	1 cut(s)	142
Hin1II	CATG	7 cut(s)	62, 172, 553, 701, 739, 760, 778
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HindIII	AAGCTT	2 cut(s)	617, 762
HinfI	GANTC	2 cut(s)	15, 816
HphI	GGTGA	3 cut(s)	346, 532, 860
Hpy166II	GTNNAC	5 cut(s)	56, 216, 222, 337, 390
Hpy188I	TCNGA	6 cut(s)	281, 313, 325, 401, 591, 837
Hpy188III	TCNNGA	5 cut(s)	19, 107, 628, 775, 859
Hpy8I	GTNNAC	5 cut(s)	56, 216, 222, 337, 390
HpyAV	CCTTC	1 cut(s)	418
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4IV	ACGT	2 cut(s)	218, 624
HpyCH4V	TGCA	5 cut(s)	6, 363, 541, 546, 855
HpyF10VI	GCNNNNNNNGC	4 cut(s)	126, 208, 494, 591
HpyF3I	CTNAG	2 cut(s)	122, 590
HpySE526I	ACGT	2 cut(s)	218, 624
Hsp92II	CATG	7 cut(s)	62, 172, 553, 701, 739, 760, 778
HspAI	GCGC	1 cut(s)	140
Kzo9I	GATC	2 cut(s)	498, 571
Lsp1109I	GCAGC	1 cut(s)	195
LweI	GCATC	2 cut(s)	555, 864
MaeII	ACGT	2 cut(s)	218, 624
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	2 cut(s)	500, 573
MboI	GATC	2 cut(s)	498, 571
MboII	GAAGA	1 cut(s)	642
MfeI	CAATTG	1 cut(s)	489
MhlI	GDGCHC	1 cut(s)	349
MluCI	AATT	7 cut(s)	65, 153, 261, 328, 489, 666, 748
MlyI	GAGTC	1 cut(s)	9
MnlI	CCTC	4 cut(s)	169, 184, 511, 520
MseI	TTAA	3 cut(s)	423, 747, 752
MslI	CAYNNNNRTG	1 cut(s)	227
MunI	CAATTG	1 cut(s)	489
Mva1269I	GAATGC	1 cut(s)	585
MwoI	GCNNNNNNNGC	4 cut(s)	126, 208, 494, 591
NdeII	GATC	2 cut(s)	498, 571
NlaIII	CATG	7 cut(s)	62, 172, 553, 701, 739, 760, 778
NlaIV	GGNNCC	1 cut(s)	119
NspI	RCATGY	3 cut(s)	62, 701, 739
PagI	TCATGA	1 cut(s)	774
PciI	ACATGT	3 cut(s)	58, 697, 735
PctI	GAATGC	1 cut(s)	585
PfeI	GAWTC	1 cut(s)	816
PkrI	GCNGC	1 cut(s)	210
PleI	GAGTC	1 cut(s)	9
PpsI	GAGTC	1 cut(s)	9
PscI	ACATGT	3 cut(s)	58, 697, 735
PspFI	CCCAGC	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	119
PspPI	GGNCC	2 cut(s)	118, 193
PstI	CTGCAG	1 cut(s)	543
RsaI	GTAC	2 cut(s)	55, 531
RsaNI	GTAC	2 cut(s)	54, 530
RseI	CAYNNNNRTG	1 cut(s)	227
SaqAI	TTAA	3 cut(s)	423, 747, 752
SatI	GCNGC	1 cut(s)	209
Sau3AI	GATC	2 cut(s)	498, 571
Sau96I	GGNCC	2 cut(s)	118, 193
SchI	GAGTC	1 cut(s)	9
SduI	GDGCHC	1 cut(s)	349
SfaNI	GCATC	2 cut(s)	555, 864
SfcI	CTRYAG	3 cut(s)	539, 729, 787
SmiMI	CAYNNNNRTG	1 cut(s)	227
Sse9I	AATT	7 cut(s)	65, 153, 261, 328, 489, 666, 748
SsiI	CCGC	1 cut(s)	606
SspI	AATATT	1 cut(s)	372
StyI	CCWWGG	2 cut(s)	189, 843
TaaI	ACNGT	1 cut(s)	89
TaiI	ACGT	2 cut(s)	221, 627
TaqI	TCGA	5 cut(s)	678, 694, 767, 795, 814
TaqII	GACCGA	1 cut(s)	524
TasI	AATT	7 cut(s)	65, 153, 261, 328, 489, 666, 748
TfiI	GAWTC	1 cut(s)	816
Tru1I	TTAA	3 cut(s)	423, 747, 752
Tru9I	TTAA	3 cut(s)	423, 747, 752
TscAI	CASTG	2 cut(s)	76, 548
TseI	GCWGC	1 cut(s)	208
TspDTI	ATGAA	6 cut(s)	400, 629, 763, 773, 808, 874
TspGWI	ACGGA	1 cut(s)	151
TspRI	CASTG	2 cut(s)	76, 548
XapI	RAATTY	2 cut(s)	153, 328
XceI	RCATGY	3 cut(s)	62, 701, 739
XcmI	CCANNNNNNNNNTGG	1 cut(s)	229
XmiI	GTMKAC	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.