pycom520g00820
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_520
N/A
Physical Location & Seq
Reverse (-)
650839 .. 651155
317 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 207 bp
ATGGCGCTGTTTTGGGCATCGACGATCTTCTTCCTGCAAGGAAGAGATGCGGGAGACCTGTGGCGACCGAGACCAACGATTCGTGATGCTGCCCAGGAGCTCTTGGACGTCGGCTTCCCCATGTTGGAGAGGATGATCCGAGATGTTGCTGTGCCATGCACAGGAAGGGATGACGAGATGGCGCTTGCCATGCAGAGGAGAAGATGA

Protein Analysis

69

Amino Acids

7.88

Weight (kDa)

6.13

Isoelectric Point (pI)

48.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 111
AciI CCGC 1 cut(s) 50
AclWI GGATC 1 cut(s) 130
AcyI GRCGYC 1 cut(s) 108
AfiI CCNNNNNNNGG 3 cut(s) 124, 161, 195
AjnI CCWGG 1 cut(s) 93
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 2 cut(s) 48, 64
AlwI GGATC 1 cut(s) 130
ApeKI GCWGC 1 cut(s) 89
ArsI GACNNNNNNTTYG 2 cut(s) 63, 95
AspLEI GCGC 2 cut(s) 7, 184
BanII GRGCYC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 76
BccI CCATC 1 cut(s) 172
BciT130I CCWGG 1 cut(s) 95
BcoDI GTCTC 2 cut(s) 48, 64
BfoI RGCGCY 2 cut(s) 8, 185
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 95
BmrFI CCNGG 1 cut(s) 95
BmsI GCATC 3 cut(s) 26, 37, 76
BsaHI GRCGYC 1 cut(s) 108
BsaI GGTCTC 2 cut(s) 48, 64
BsaJI CCNNGG 1 cut(s) 93
Bsc4I CCNNNNNNNGG 3 cut(s) 124, 161, 195
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 2 cut(s) 138, 175
BseLI CCNNNNNNNGG 3 cut(s) 124, 161, 195
BseXI GCAGC 1 cut(s) 76
Bsh1285I CGRYCG 1 cut(s) 68
BsiEI CGRYCG 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 102
BslI CCNNNNNNNGG 3 cut(s) 124, 161, 195
BsmAI GTCTC 2 cut(s) 48, 64
Bso31I GGTCTC 2 cut(s) 48, 64
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 2 cut(s) 24, 135
BspACI CCGC 1 cut(s) 50
BspPI GGATC 1 cut(s) 130
BspTNI GGTCTC 2 cut(s) 48, 64
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 2 cut(s) 24, 135
BssNI GRCGYC 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 95
Bst6I CTCTTC 1 cut(s) 37
BstACI GRCGYC 1 cut(s) 108
BstC8I GCNNGC 1 cut(s) 186
BstF5I GGATG 2 cut(s) 138, 175
BstH2I RGCGCY 2 cut(s) 8, 185
BstHHI GCGC 2 cut(s) 7, 184
BstKTI GATC 2 cut(s) 27, 138
BstMAI GTCTC 2 cut(s) 48, 64
BstMBI GATC 2 cut(s) 24, 135
BstMCI CGRYCG 1 cut(s) 68
BstMWI GCNNNNNNNGC 1 cut(s) 190
BstNI CCWGG 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 76
BtsCI GGATG 2 cut(s) 138, 175
Cac8I GCNNGC 1 cut(s) 186
CfoI GCGC 2 cut(s) 7, 184
CviAII CATG 3 cut(s) 121, 156, 190
CviJI RGCY 2 cut(s) 100, 114
CviKI_1 RGCY 2 cut(s) 100, 114
DpnI GATC 2 cut(s) 26, 137
DpnII GATC 2 cut(s) 24, 135
Eam1104I CTCTTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 37
Ecl136II GAGCTC 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 102
Eco31I GGTCTC 2 cut(s) 48, 64
Eco53kI GAGCTC 1 cut(s) 100
EcoICRI GAGCTC 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 102
FaeI CATG 3 cut(s) 124, 159, 193
FaiI YATR 3 cut(s) 122, 157, 191
FatI CATG 3 cut(s) 120, 155, 189
FauI CCCGC 1 cut(s) 43
Fnu4HI GCNGC 1 cut(s) 90
FokI GGATG 2 cut(s) 145, 182
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 90
GlaI GCGC 2 cut(s) 6, 183
GluI GCNGC 1 cut(s) 90
HaeII RGCGCY 2 cut(s) 8, 185
HhaI GCGC 2 cut(s) 7, 184
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 3 cut(s) 124, 159, 193
Hin6I GCGC 2 cut(s) 5, 182
HinP1I GCGC 2 cut(s) 5, 182
HinfI GANTC 1 cut(s) 79
Hpy188I TCNGA 1 cut(s) 140
Hpy188III TCNNGA 1 cut(s) 83
Hpy99I CGWCG 2 cut(s) 25, 113
HpyAV CCTTC 1 cut(s) 159
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 3 cut(s) 37, 159, 193
HpyF10VI GCNNNNNNNGC 1 cut(s) 190
HpySE526I ACGT 1 cut(s) 108
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 3 cut(s) 124, 159, 193
HspAI GCGC 2 cut(s) 5, 182
Kzo9I GATC 2 cut(s) 24, 135
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 5 cut(s) 47, 71, 80, 107, 147
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 3 cut(s) 26, 37, 76
MaeII ACGT 1 cut(s) 108
MalI GATC 2 cut(s) 26, 137
MboI GATC 2 cut(s) 24, 135
MboII GAAGA 3 cut(s) 19, 22, 54
MhlI GDGCHC 1 cut(s) 102
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 2 cut(s) 123, 189
MspR9I CCNGG 1 cut(s) 95
MvaI CCWGG 1 cut(s) 95
MwoI GCNNNNNNNGC 1 cut(s) 190
NdeII GATC 2 cut(s) 24, 135
NlaIII CATG 3 cut(s) 124, 159, 193
PfeI GAWTC 1 cut(s) 79
PkrI GCNGC 1 cut(s) 91
Psp124BI GAGCTC 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 93
SacI GAGCTC 1 cut(s) 102
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 2 cut(s) 24, 135
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 1 cut(s) 102
SetI ASST 3 cut(s) 60, 102, 111
SfaNI GCATC 3 cut(s) 26, 37, 76
SsiI CCGC 1 cut(s) 50
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 93
TaiI ACGT 1 cut(s) 111
TaqI TCGA 1 cut(s) 20
TaqII GACCGA 1 cut(s) 82
TfiI GAWTC 1 cut(s) 79
TseI GCWGC 1 cut(s) 89
ZraI GACGTC 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.