Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_581

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

118879 .. 119667

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGATTGTCGCCGTTGGTCAGCCCTTAACTTTGTGGCGGCCCCGTGGCTGGAGAGCGGCGTCAAGGGAAAAGGATGCCGCATCTGTTTACAAAAGGAGCTGTAGCATGAGAGTTAGAGTAAGACCAGCGCGGTCACTTCTTTCAGGGGCCAGACCAGCAACACCTGCGGTGAACTTGCAGATCTATCGAGGCGGCGGTGATCGAACGGACGACCTTCCGGCGGAGGCAAGGGCCCTGGCACGTGCTGCAAATGCTTCCATTTACAGCCCCGAACTGCTTGTGGGCAAGTTGTTGCTGTCAAGGTGCAACGTCCGGGCATTGAAGAAGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0006995 GO:0006996 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009628 GO:0009639 GO:0009642 GO:0009644 GO:0009657 GO:0009658 GO:0009987 GO:0009991 GO:0010035 GO:0010114 GO:0010287 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0031279 GO:0031647 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0036211 GO:0042221 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043562 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0050821 GO:0050896 GO:0051716 GO:0051726 GO:0065007 GO:0065008 GO:0065009 GO:0071496 GO:0071704 GO:0071840 GO:0080177 GO:0080183 GO:0097472 GO:0140096 GO:1901564 GO:1901700 GO:1902171

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1

Protein Analysis

111

Amino Acids

12.03

Weight (kDa)

11.42

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	172
Acc36I	ACCTGC	1 cut(s)	172
AccBSI	CCGCTC	1 cut(s)	56
AccII	CGCG	1 cut(s)	130
AciI	CCGC	8 cut(s)	37, 56, 78, 130, 167, 192, 195, 221
AcvI	CACGTG	1 cut(s)	242
AcyI	GRCGYC	1 cut(s)	59
AfiI	CCNNNNNNNGG	2 cut(s)	48, 220
AgsI	TTSAA	1 cut(s)	322
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	2 cut(s)	99, 328
AluI	AGCT	2 cut(s)	99, 328
AoxI	GGCC	3 cut(s)	38, 147, 231
ApaI	GGGCCC	1 cut(s)	235
ApeKI	GCWGC	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	4 cut(s)	39, 147, 231, 232
AsuC2I	CCSGG	1 cut(s)	314
AsuHPI	GGTGA	2 cut(s)	181, 209
BaeGI	GKGCMC	1 cut(s)	235
BanII	GRGCYC	1 cut(s)	235
BbrPI	CACGTG	1 cut(s)	242
BbvI	GCAGC	1 cut(s)	232
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BciT130I	CCWGG	1 cut(s)	236
BcnI	CCSGG	1 cut(s)	314
BfmI	CTRYAG	2 cut(s)	100, 329
BfuAI	ACCTGC	1 cut(s)	172
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	5 cut(s)	38, 57, 78, 193, 246
BlsI	GCNGC	5 cut(s)	39, 58, 79, 194, 247
Bme1390I	CCNGG	2 cut(s)	236, 314
BmgT120I	GGNCC	4 cut(s)	39, 147, 231, 232
BmiI	GGNNCC	3 cut(s)	41, 148, 233
BmrFI	CCNGG	2 cut(s)	236, 314
BmsI	GCATC	2 cut(s)	64, 89
BpmI	CTGGAG	1 cut(s)	70
BpuMI	CCSGG	1 cut(s)	314
BsaAI	YACGTR	1 cut(s)	242
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	43, 234
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 220
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	2 cut(s)	43, 234
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	2 cut(s)	48, 220
BseSI	GKGCMC	1 cut(s)	235
BseXI	GCAGC	1 cut(s)	232
Bsh1236I	CGCG	1 cut(s)	130
BshFI	GGCC	3 cut(s)	40, 149, 233
BsiSI	CCGG	2 cut(s)	218, 313
BslI	CCNNNNNNNGG	2 cut(s)	48, 220
BsnI	GGCC	3 cut(s)	40, 149, 233
Bsp120I	GGGCCC	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp143I	GATC	2 cut(s)	180, 199
BspACI	CCGC	8 cut(s)	37, 56, 78, 130, 167, 192, 195, 221
BspANI	GGCC	3 cut(s)	40, 149, 233
BspFNI	CGCG	1 cut(s)	130
BspLI	GGNNCC	3 cut(s)	41, 148, 233
BspMI	ACCTGC	1 cut(s)	172
BsrBI	CCGCTC	1 cut(s)	56
BssECI	CCNNGG	2 cut(s)	43, 234
BssMI	GATC	2 cut(s)	180, 199
BssNI	GRCGYC	1 cut(s)	59
Bst2UI	CCWGG	1 cut(s)	236
BstACI	GRCGYC	1 cut(s)	59
BstAPI	GCANNNNNTGC	2 cut(s)	164, 245
BstBAI	YACGTR	1 cut(s)	242
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	1 cut(s)	79
BstFNI	CGCG	1 cut(s)	130
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	2 cut(s)	183, 202
BstMBI	GATC	2 cut(s)	180, 199
BstMWI	GCNNNNNNNGC	4 cut(s)	155, 164, 245, 251
BstNI	CCWGG	1 cut(s)	236
BstSCI	CCNGG	2 cut(s)	234, 312
BstSFI	CTRYAG	2 cut(s)	100, 329
BstSLI	GKGCMC	1 cut(s)	235
BstUI	CGCG	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	232
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BsuRI	GGCC	3 cut(s)	40, 149, 233
BtgI	CCRYGG	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	79
BveI	ACCTGC	1 cut(s)	172
CfoI	GCGC	1 cut(s)	130
Cfr13I	GGNCC	4 cut(s)	39, 147, 231, 232
CseI	GACGC	1 cut(s)	48
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	8 cut(s)	22, 40, 48, 99, 149, 233, 267, 328
CviKI_1	RGCY	8 cut(s)	22, 40, 48, 99, 149, 233, 267, 328
DpnI	GATC	2 cut(s)	182, 201
DpnII	GATC	2 cut(s)	180, 199
EciI	GGCGGA	1 cut(s)	236
Eco24I	GRGCYC	1 cut(s)	235
Eco72I	CACGTG	1 cut(s)	242
EcoO109I	RGGNCCY	2 cut(s)	231, 232
EcoRII	CCWGG	1 cut(s)	234
EcoT38I	GRGCYC	1 cut(s)	235
FaeI	CATG	1 cut(s)	109
FaiI	YATR	2 cut(s)	107, 331
FatI	CATG	1 cut(s)	105
Fnu4HI	GCNGC	5 cut(s)	38, 57, 78, 193, 246
FokI	GGATG	1 cut(s)	86
FriOI	GRGCYC	1 cut(s)	235
Fsp4HI	GCNGC	5 cut(s)	38, 57, 78, 193, 246
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	5 cut(s)	38, 57, 78, 193, 246
GsuI	CTGGAG	1 cut(s)	70
HaeIII	GGCC	3 cut(s)	40, 149, 233
HapII	CCGG	2 cut(s)	218, 313
HgaI	GACGC	1 cut(s)	48
HhaI	GCGC	1 cut(s)	130
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	1 cut(s)	109
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HpaII	CCGG	2 cut(s)	218, 313
HphI	GGTGA	2 cut(s)	181, 209
Hpy166II	GTNNAC	2 cut(s)	88, 172
Hpy8I	GTNNAC	2 cut(s)	88, 172
HpyAV	CCTTC	1 cut(s)	224
HpyCH4IV	ACGT	2 cut(s)	241, 309
HpyCH4V	TGCA	3 cut(s)	178, 248, 306
HpyF10VI	GCNNNNNNNGC	4 cut(s)	155, 164, 245, 251
HpySE526I	ACGT	2 cut(s)	241, 309
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	1 cut(s)	109
HspAI	GCGC	1 cut(s)	128
Kzo9I	GATC	2 cut(s)	180, 199
LmnI	GCTCC	1 cut(s)	96
Lsp1109I	GCAGC	1 cut(s)	232
LweI	GCATC	2 cut(s)	64, 89
MaeII	ACGT	2 cut(s)	241, 309
MaeIII	GTNAC	1 cut(s)	132
MalI	GATC	2 cut(s)	182, 201
MbiI	CCGCTC	1 cut(s)	56
MboI	GATC	2 cut(s)	180, 199
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	235
MnlI	CCTC	2 cut(s)	182, 217
MseI	TTAA	1 cut(s)	26
MspI	CCGG	2 cut(s)	218, 313
MspR9I	CCNGG	2 cut(s)	236, 314
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	1 cut(s)	130
MwoI	GCNNNNNNNGC	4 cut(s)	155, 164, 245, 251
NciI	CCSGG	1 cut(s)	314
NdeII	GATC	2 cut(s)	180, 199
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	3 cut(s)	41, 148, 233
NmuCI	GTSAC	1 cut(s)	132
PaqCI	CACCTGC	1 cut(s)	172
PkrI	GCNGC	5 cut(s)	39, 58, 79, 194, 247
PmaCI	CACGTG	1 cut(s)	242
PmlI	CACGTG	1 cut(s)	242
Ppu21I	YACGTR	1 cut(s)	242
Psp6I	CCWGG	1 cut(s)	234
PspCI	CACGTG	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	3 cut(s)	41, 148, 233
PspOMI	GGGCCC	1 cut(s)	231
PspPI	GGNCC	4 cut(s)	39, 147, 231, 232
PsuI	RGATCY	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	26
SatI	GCNGC	5 cut(s)	38, 57, 78, 193, 246
Sau3AI	GATC	2 cut(s)	180, 199
Sau96I	GGNCC	4 cut(s)	39, 147, 231, 232
ScrFI	CCNGG	2 cut(s)	236, 314
SduI	GDGCHC	1 cut(s)	235
SetI	ASST	7 cut(s)	101, 166, 216, 244, 305, 312, 330
SfaNI	GCATC	2 cut(s)	64, 89
SfcI	CTRYAG	2 cut(s)	100, 329
SsiI	CCGC	8 cut(s)	37, 56, 78, 130, 167, 192, 195, 221
StyD4I	CCNGG	2 cut(s)	234, 312
TaiI	ACGT	2 cut(s)	244, 312
TaqI	TCGA	2 cut(s)	187, 202
TauI	GCSGC	4 cut(s)	40, 59, 80, 195
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TseFI	GTSAC	1 cut(s)	132
TseI	GCWGC	1 cut(s)	245
Tsp45I	GTSAC	1 cut(s)	132
TspGWI	ACGGA	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.