Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00000608

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

92163 .. 93040

Gene Structure 878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGCAGAGCAGGAACTATAACCCCAAGAAGAGGCCCGTGATTCTATTAACGTTGTGGAAACCACATGAGCCTGTATACCCCAAGCTGATCAAAACTACAATTGATGGCCTAAGCATTGCAGAAACAAAGGAAATGAGAAAGAGGGGATTAGCTGTCCTTGCTTTAACAAAACTTGGATCTTGTTCTTGTATCCCGCTGACATTTGAGAAGGAACAGATTGTGGTTTGGAGAGGGAAGGCCTATAAGCCTCCCGAGGATGGATACTTCCTTCCAGATCGAGAACTGTTTGATAGTCCAGAAGGTGATTTGGGTTCTGGTGCAGAGGCGTGTGACAAGTCAGAATCAGATGGCAACAGTAGTCTAAAGGAATTATCGTCTGGAGAAGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0008535 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010257 GO:0010467 GO:0016043 GO:0016070 GO:0017004 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032981 GO:0033108 GO:0033617 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

131

Amino Acids

14.49

Weight (kDa)

5.56

Isoelectric Point (pI)

50.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	75
AciI	CCGC	1 cut(s)	194
AclI	AACGTT	1 cut(s)	50
AclWI	GGATC	1 cut(s)	184
AfiI	CCNNNNNNNGG	2 cut(s)	30, 257
AluBI	AGCT	2 cut(s)	85, 152
AluI	AGCT	2 cut(s)	85, 152
AlwI	GGATC	1 cut(s)	184
Ama87I	CYCGRG	1 cut(s)	251
AoxI	GGCC	3 cut(s)	32, 106, 237
AspS9I	GGNCC	1 cut(s)	33
AsuHPI	GGTGA	1 cut(s)	314
AvaI	CYCGRG	1 cut(s)	251
BccI	CCATC	3 cut(s)	98, 251, 341
BciVI	GTATCC	2 cut(s)	200, 254
BclI	TGATCA	1 cut(s)	87
BfuI	GTATCC	2 cut(s)	200, 254
BmeT110I	CYCGRG	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	33
Bpu10I	CCTNAGC	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 257
Bse3DI	GCAATG	1 cut(s)	114
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	2 cut(s)	30, 257
BseMI	GCAATG	1 cut(s)	114
BsgI	GTGCAG	1 cut(s)	339
BshFI	GGCC	3 cut(s)	34, 108, 239
BsiHKCI	CYCGRG	1 cut(s)	251
BslI	CCNNNNNNNGG	2 cut(s)	30, 257
BsnI	GGCC	3 cut(s)	34, 108, 239
BsoBI	CYCGRG	1 cut(s)	251
Bsp143I	GATC	3 cut(s)	87, 176, 274
BspACI	CCGC	1 cut(s)	194
BspANI	GGCC	3 cut(s)	34, 108, 239
BspPI	GGATC	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	3 cut(s)	87, 176, 274
BssNAI	GTATAC	1 cut(s)	76
Bst1107I	GTATAC	1 cut(s)	76
Bst4CI	ACNGT	2 cut(s)	285, 356
Bst6I	CTCTTC	1 cut(s)	23
BstDEI	CTNAG	1 cut(s)	110
BstF5I	GGATG	1 cut(s)	262
BstKTI	GATC	3 cut(s)	90, 179, 277
BstMBI	GATC	3 cut(s)	87, 176, 274
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
BstZ17I	GTATAC	1 cut(s)	76
BsuI	GTATCC	2 cut(s)	200, 254
BsuRI	GGCC	3 cut(s)	34, 108, 239
BtsCI	GGATG	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	33
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	7 cut(s)	34, 70, 85, 108, 152, 239, 247
CviKI_1	RGCY	7 cut(s)	34, 70, 85, 108, 152, 239, 247
DdeI	CTNAG	1 cut(s)	110
DpnI	GATC	3 cut(s)	89, 178, 276
DpnII	GATC	3 cut(s)	87, 176, 274
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Eco147I	AGGCCT	1 cut(s)	239
Eco88I	CYCGRG	1 cut(s)	251
FaeI	CATG	1 cut(s)	68
FaiI	YATR	4 cut(s)	18, 66, 76, 243
FatI	CATG	1 cut(s)	64
FauI	CCCGC	1 cut(s)	201
FbaI	TGATCA	1 cut(s)	87
FblI	GTMKAC	1 cut(s)	75
FokI	GGATG	1 cut(s)	269
HaeIII	GGCC	3 cut(s)	34, 108, 239
Hin1II	CATG	1 cut(s)	68
HinfI	GANTC	2 cut(s)	40, 341
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	2 cut(s)	340, 346
Hpy188III	TCNNGA	5 cut(s)	251, 272, 278, 296, 378
Hpy8I	GTNNAC	1 cut(s)	76
HpyAV	CCTTC	4 cut(s)	202, 229, 278, 293
HpyCH4III	ACNGT	2 cut(s)	285, 356
HpyCH4IV	ACGT	1 cut(s)	50
HpyCH4V	TGCA	3 cut(s)	4, 119, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	1 cut(s)	110
HpySE526I	ACGT	1 cut(s)	50
Hsp92II	CATG	1 cut(s)	68
Ksp22I	TGATCA	1 cut(s)	87
Kzo9I	GATC	3 cut(s)	87, 176, 274
LpnPI	CCDG	5 cut(s)	84, 285, 300, 309, 363
MaeII	ACGT	1 cut(s)	50
MaeIII	GTNAC	1 cut(s)	329
MalI	GATC	3 cut(s)	89, 178, 276
MboI	GATC	3 cut(s)	87, 176, 274
MboII	GAAGA	1 cut(s)	40
MfeI	CAATTG	1 cut(s)	99
MflI	RGATCY	1 cut(s)	176
MluCI	AATT	2 cut(s)	99, 368
MnlI	CCTC	6 cut(s)	24, 135, 224, 247, 258, 316
MseI	TTAA	2 cut(s)	47, 164
MspA1I	CMGCKG	1 cut(s)	196
MunI	CAATTG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeII	GATC	3 cut(s)	87, 176, 274
NlaIII	CATG	1 cut(s)	68
NmuCI	GTSAC	1 cut(s)	329
PceI	AGGCCT	1 cut(s)	239
PfeI	GAWTC	2 cut(s)	40, 341
Psp1406I	AACGTT	1 cut(s)	50
PspPI	GGNCC	1 cut(s)	33
PsuI	RGATCY	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	47, 164
Sau3AI	GATC	3 cut(s)	87, 176, 274
Sau96I	GGNCC	1 cut(s)	33
SetI	ASST	4 cut(s)	53, 87, 154, 304
Sse9I	AATT	2 cut(s)	99, 368
SseBI	AGGCCT	1 cut(s)	239
SsiI	CCGC	1 cut(s)	194
StuI	AGGCCT	1 cut(s)	239
TaaI	ACNGT	2 cut(s)	285, 356
TaiI	ACGT	1 cut(s)	53
TaqI	TCGA	1 cut(s)	277
TasI	AATT	2 cut(s)	99, 368
TfiI	GAWTC	2 cut(s)	40, 341
Tru1I	TTAA	2 cut(s)	47, 164
Tru9I	TTAA	2 cut(s)	47, 164
TseFI	GTSAC	1 cut(s)	329
Tsp45I	GTSAC	1 cut(s)	329
XmiI	GTMKAC	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.