pycom72g00040

3-oxoacyl- acyl-carrier-protein reductase

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00000072
N/A
Physical Location & Seq
Forward (+)
31786 .. 32784
999 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 396 bp
ATGACTCAAGTCCGTGTAGAGAACACTTCGTACTTGAAATGTGTGGTTGAATGTCATGAGGCATCTGGTGGTCAAGCTCTAACATTCGGGGGTGATGTTTCAAAGGAAGAAGATGTCACAGGCTTATTGATGAGAATGAAAAAATCCCAATGGCAGGAGGTTATTGATTTGAATCTTACTGGTGTGTTTCTATTGCAGGGAAGGATAATCAATATAGCATCTGTTGTTGGTCTTGTTGGCAATGTTGGACAAGCCAACTACAGTGCTGCAAAGGCTGGAGTCATTGGCTTCACGAAGAGTGTTGCAAAGGAATATTCGAGCAGGAACATTAATGTATGTCAGTGGTTATGCAGTTCAATCTTCAAGACGTTAAACATGCAAGCAGATAGATTTTAA

Protein Analysis

132

Amino Acids

14.31

Weight (kDa)

8.39

Isoelectric Point (pI)

29.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 40 - 112 2.7e-10 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 45 - 123 7.4e-17 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 154
AgsI TTSAA 6 cut(s) 37, 50, 102, 172, 357, 364
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 266
AseI ATTAAT 1 cut(s) 330
AsuHPI GGTGA 1 cut(s) 104
BbvI GCAGC 1 cut(s) 253
BfmI CTRYAG 1 cut(s) 259
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
BmsI GCATC 2 cut(s) 71, 227
BoxI GACNNNNGTC 1 cut(s) 8
BpmI CTGGAG 1 cut(s) 297
BsaBI GATNNNNATC 1 cut(s) 171
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse1I ACTGG 1 cut(s) 184
Bse3DI GCAATG 1 cut(s) 247
Bse8I GATNNNNATC 1 cut(s) 171
BseJI GATNNNNATC 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMI GCAATG 1 cut(s) 247
BseNI ACTGG 1 cut(s) 184
BseXI GCAGC 1 cut(s) 253
BslI CCNNNNNNNGG 1 cut(s) 154
BspHI TCATGA 1 cut(s) 55
BsrDI GCAATG 1 cut(s) 247
BsrI ACTGG 1 cut(s) 184
Bst4CI ACNGT 1 cut(s) 263
Bst6I CTCTTC 1 cut(s) 290
BstC8I GCNNGC 1 cut(s) 381
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNSI RCATGY 1 cut(s) 379
BstPAI GACNNNNGTC 1 cut(s) 8
BstSFI CTRYAG 1 cut(s) 259
BstV1I GCAGC 1 cut(s) 253
BtsIMutI CAGTG 2 cut(s) 268, 347
Cac8I GCNNGC 1 cut(s) 381
CciI TCATGA 1 cut(s) 55
Csp6I GTAC 1 cut(s) 31
CviAII CATG 2 cut(s) 56, 376
CviJI RGCY 5 cut(s) 77, 123, 254, 275, 288
CviKI_1 RGCY 5 cut(s) 77, 123, 254, 275, 288
CviQI GTAC 1 cut(s) 31
Eam1104I CTCTTC 1 cut(s) 290
EarI CTCTTC 1 cut(s) 290
FaeI CATG 2 cut(s) 59, 379
FaiI YATR 5 cut(s) 57, 215, 337, 349, 377
FatI CATG 2 cut(s) 55, 375
Fnu4HI GCNGC 1 cut(s) 267
Fsp4HI GCNGC 1 cut(s) 267
GluI GCNGC 1 cut(s) 267
GsuI CTGGAG 1 cut(s) 297
Hin1II CATG 2 cut(s) 59, 379
HinfI GANTC 3 cut(s) 4, 172, 279
HphI GGTGA 1 cut(s) 104
Hpy188III TCNNGA 3 cut(s) 56, 292, 364
HpyAV CCTTC 1 cut(s) 195
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4IV ACGT 1 cut(s) 368
HpyCH4V TGCA 5 cut(s) 196, 269, 305, 351, 379
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpySE526I ACGT 1 cut(s) 368
Hsp92II CATG 2 cut(s) 59, 379
LpnPI CCDG 7 cut(s) 51, 105, 140, 165, 182, 261, 307
Lsp1109I GCAGC 1 cut(s) 253
LweI GCATC 2 cut(s) 71, 227
MaeII ACGT 1 cut(s) 368
MaeIII GTNAC 1 cut(s) 115
MboII GAAGA 4 cut(s) 119, 122, 307, 352
MlyI GAGTC 1 cut(s) 288
MmeI TCCRAC 1 cut(s) 226
MnlI CCTC 2 cut(s) 52, 151
MseI TTAA 3 cut(s) 330, 371, 394
MwoI GCNNNNNNNGC 1 cut(s) 272
NlaIII CATG 2 cut(s) 59, 379
NmuCI GTSAC 1 cut(s) 115
NspI RCATGY 1 cut(s) 379
PagI TCATGA 1 cut(s) 55
PfeI GAWTC 1 cut(s) 172
PkrI GCNGC 1 cut(s) 268
PleI GAGTC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 287
PshAI GACNNNNGTC 1 cut(s) 8
PshBI ATTAAT 1 cut(s) 330
PsrI GAACNNNNNNTAC 2 cut(s) 14, 46
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SaqAI TTAA 3 cut(s) 330, 371, 394
SatI GCNGC 1 cut(s) 267
SchI GAGTC 1 cut(s) 288
SetI ASST 3 cut(s) 79, 162, 371
SfaNI GCATC 2 cut(s) 71, 227
SfcI CTRYAG 1 cut(s) 259
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
SspI AATATT 1 cut(s) 314
TaaI ACNGT 1 cut(s) 263
TaiI ACGT 1 cut(s) 371
TaqI TCGA 1 cut(s) 317
TfiI GAWTC 1 cut(s) 172
Tru1I TTAA 3 cut(s) 330, 371, 394
Tru9I TTAA 3 cut(s) 330, 371, 394
TscAI CASTG 2 cut(s) 268, 347
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 1 cut(s) 152
TspRI CASTG 2 cut(s) 268, 347
VspI ATTAAT 1 cut(s) 330
XceI RCATGY 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.