Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00000072

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

34757 .. 36187

Gene Structure 1431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGATGGGTGATTATCGATCCCTATGTCTTGCCAGGTGGGTCCCGATTAAAAATAATGATTGGTACTGGATCCGACATCACATAAAAGTTGGTATGCCTGTCATTGTTGAAATCCTGGTGAGTTCTGTTTCCGTCCACTTTTCCAGATTTAACAGATTTGACTTTTCACCAATATTTCATCGTGATGAAGATACTAATCCAGATGAATTGCGGGTGTGTGATTTTCCTTTAAGTTTCATTTTTTCCTCCTTTCCCCTGGCCCCTGTTATTATGCCTATCATTAGCTTATTGTTCAAAATTGACCTTTCACTATCACCATCATGCTACTCATTGACTAGCGTTATTGTCTTGATGCAGTTGTGGCAGATACATGTTGCTGAGCAAATGATTTTGAATGATTTGGAGGCTAATCCTGATAAATACAAAGGCAAAAAACTGTCAGAGTTATCTGATCCTGAAGATTACGATGAAAAAAACAATGTTGAATATACAACAGCCCAGTACAAGAAAACTGTAATACCGAAAGTGATTCTGGTAAATGATTCTCCAGTGACATTTTTTGTACGCAGAAAACTAGCGTTAAAGAACTTGATTTGGAGGCTGCATTTGCTGAGCGCCAGGTCAGCTGTTCCGTTGCCTGTTAGATTCATATTCTTGAGTATTACATTTGCTCAAAGCACTATATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005829 GO:0009295 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009570 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

26.66

Weight (kDa)

8.38

Isoelectric Point (pI)

48.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	211
AclWI	GGATC	4 cut(s)	12, 64, 77, 446
AcuI	CTGAAG	1 cut(s)	477
AfaI	GTAC	3 cut(s)	65, 503, 564
AflIII	ACRYGT	1 cut(s)	370
AgsI	TTSAA	4 cut(s)	110, 295, 394, 485
AjnI	CCWGG	4 cut(s)	32, 114, 255, 617
AluBI	AGCT	2 cut(s)	285, 626
AluI	AGCT	2 cut(s)	285, 626
AlwI	GGATC	4 cut(s)	12, 64, 77, 446
AoxI	GGCC	1 cut(s)	258
ApeKI	GCWGC	1 cut(s)	601
AspLEI	GCGC	1 cut(s)	617
AspS9I	GGNCC	2 cut(s)	40, 259
AsuHPI	GGTGA	4 cut(s)	20, 130, 159, 306
AvaII	GGWCC	1 cut(s)	40
BamHI	GGATCC	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	588
BccI	CCATC	1 cut(s)	325
BciT130I	CCWGG	4 cut(s)	34, 116, 257, 619
BfaI	CTAG	2 cut(s)	336, 575
BfoI	RGCGCY	1 cut(s)	618
BisI	GCNGC	1 cut(s)	602
BlpI	GCTNAGC	2 cut(s)	378, 611
BlsI	GCNGC	1 cut(s)	603
Bme1390I	CCNGG	4 cut(s)	34, 116, 257, 619
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	40, 259
BmiI	GGNNCC	4 cut(s)	41, 42, 71, 261
BmrFI	CCNGG	4 cut(s)	34, 116, 257, 619
BmrI	ACTGGG	1 cut(s)	493
BmsI	GCATC	1 cut(s)	342
BmuI	ACTGGG	1 cut(s)	493
BpmI	CTGGAG	1 cut(s)	531
Bpu1102I	GCTNAGC	2 cut(s)	378, 611
BpuEI	CTTGAG	1 cut(s)	676
Bsa29I	ATCGAT	1 cut(s)	16
BsaBI	GATNNNNATC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	255
Bse1I	ACTGG	3 cut(s)	71, 499, 548
Bse8I	GATNNNNATC	1 cut(s)	195
BseBI	CCWGG	4 cut(s)	34, 116, 257, 619
BseCI	ATCGAT	1 cut(s)	16
BseDI	CCNNGG	1 cut(s)	255
BseJI	GATNNNNATC	1 cut(s)	195
BseMII	CTCAG	2 cut(s)	369, 602
BseNI	ACTGG	3 cut(s)	71, 499, 548
BseXI	GCAGC	1 cut(s)	588
BshFI	GGCC	1 cut(s)	260
BshVI	ATCGAT	1 cut(s)	16
BslFI	GGGAC	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	1 cut(s)	260
Bsp143I	GATC	3 cut(s)	17, 69, 451
Bsp1720I	GCTNAGC	2 cut(s)	378, 611
BspACI	CCGC	1 cut(s)	211
BspANI	GGCC	1 cut(s)	260
BspCNI	CTCAG	2 cut(s)	370, 603
BspDI	ATCGAT	1 cut(s)	16
BspLI	GGNNCC	4 cut(s)	41, 42, 71, 261
BspPI	GGATC	4 cut(s)	12, 64, 77, 446
BsrI	ACTGG	3 cut(s)	71, 499, 548
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	3 cut(s)	17, 69, 451
Bst2UI	CCWGG	4 cut(s)	34, 116, 257, 619
Bst4CI	ACNGT	2 cut(s)	438, 514
BstDEI	CTNAG	2 cut(s)	378, 611
BstH2I	RGCGCY	1 cut(s)	618
BstHHI	GCGC	1 cut(s)	617
BstKTI	GATC	3 cut(s)	20, 72, 454
BstMBI	GATC	3 cut(s)	17, 69, 451
BstMWI	GCNNNNNNNGC	3 cut(s)	361, 607, 623
BstNI	CCWGG	4 cut(s)	34, 116, 257, 619
BstNSI	RCATGY	1 cut(s)	374
BstSCI	CCNGG	4 cut(s)	32, 114, 255, 617
BstV1I	GCAGC	1 cut(s)	588
BstX2I	RGATCY	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	69
Bsu15I	ATCGAT	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	260
BsuTUI	ATCGAT	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	555
CfoI	GCGC	1 cut(s)	617
Cfr13I	GGNCC	2 cut(s)	40, 259
ClaI	ATCGAT	1 cut(s)	16
Csp6I	GTAC	3 cut(s)	64, 502, 563
CviAII	CATG	2 cut(s)	321, 371
CviJI	RGCY	6 cut(s)	260, 285, 407, 497, 601, 626
CviKI_1	RGCY	6 cut(s)	260, 285, 407, 497, 601, 626
CviQI	GTAC	3 cut(s)	64, 502, 563
DdeI	CTNAG	2 cut(s)	378, 611
DpnI	GATC	3 cut(s)	19, 71, 453
DpnII	GATC	3 cut(s)	17, 69, 451
Eco47I	GGWCC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	477
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRII	CCWGG	4 cut(s)	32, 114, 255, 617
FaeI	CATG	2 cut(s)	324, 374
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	2 cut(s)	320, 370
FauI	CCCGC	1 cut(s)	204
Fnu4HI	GCNGC	1 cut(s)	602
Fsp4HI	GCNGC	1 cut(s)	602
FspBI	CTAG	2 cut(s)	336, 575
GlaI	GCGC	1 cut(s)	616
GluI	GCNGC	1 cut(s)	602
GsuI	CTGGAG	1 cut(s)	531
HaeII	RGCGCY	1 cut(s)	618
HaeIII	GGCC	1 cut(s)	260
HhaI	GCGC	1 cut(s)	617
Hin1II	CATG	2 cut(s)	324, 374
Hin6I	GCGC	1 cut(s)	615
HinP1I	GCGC	1 cut(s)	615
HinfI	GANTC	3 cut(s)	529, 542, 645
HphI	GGTGA	4 cut(s)	20, 130, 159, 306
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	3 cut(s)	74, 442, 451
Hpy188III	TCNNGA	8 cut(s)	43, 144, 182, 200, 349, 413, 455, 655
Hpy8I	GTNNAC	1 cut(s)	136
HpyCH4III	ACNGT	2 cut(s)	438, 514
HpyCH4V	TGCA	2 cut(s)	355, 604
HpyF10VI	GCNNNNNNNGC	3 cut(s)	361, 607, 623
HpyF3I	CTNAG	2 cut(s)	378, 611
Hsp92II	CATG	2 cut(s)	324, 374
HspAI	GCGC	1 cut(s)	615
KflI	GGGWCCC	1 cut(s)	40
Kzo9I	GATC	3 cut(s)	17, 69, 451
Lsp1109I	GCAGC	1 cut(s)	588
LweI	GCATC	1 cut(s)	342
MaeI	CTAG	2 cut(s)	336, 575
MaeIII	GTNAC	1 cut(s)	550
MalI	GATC	3 cut(s)	19, 71, 453
MboI	GATC	3 cut(s)	17, 69, 451
MboII	GAAGA	2 cut(s)	200, 470
MflI	RGATCY	1 cut(s)	69
MluCI	AATT	2 cut(s)	206, 297
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	3 cut(s)	256, 397, 591
MseI	TTAA	4 cut(s)	48, 150, 230, 581
MslI	CAYNNNNRTG	2 cut(s)	183, 319
MspA1I	CMGCKG	1 cut(s)	626
MspR9I	CCNGG	4 cut(s)	34, 116, 257, 619
MvaI	CCWGG	4 cut(s)	34, 116, 257, 619
MwoI	GCNNNNNNNGC	3 cut(s)	361, 607, 623
NdeII	GATC	3 cut(s)	17, 69, 451
NlaIII	CATG	2 cut(s)	324, 374
NlaIV	GGNNCC	4 cut(s)	41, 42, 71, 261
NmuCI	GTSAC	1 cut(s)	550
NspI	RCATGY	1 cut(s)	374
PciI	ACATGT	1 cut(s)	370
PfeI	GAWTC	3 cut(s)	529, 542, 645
PkrI	GCNGC	1 cut(s)	603
PpuMI	RGGWCCY	1 cut(s)	40
PscI	ACATGT	1 cut(s)	370
Psp5II	RGGWCCY	1 cut(s)	40
Psp6I	CCWGG	4 cut(s)	32, 114, 255, 617
PspGI	CCWGG	4 cut(s)	32, 114, 255, 617
PspN4I	GGNNCC	4 cut(s)	41, 42, 71, 261
PspPI	GGNCC	2 cut(s)	40, 259
PspPPI	RGGWCCY	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	69
PvuII	CAGCTG	1 cut(s)	626
RsaI	GTAC	3 cut(s)	65, 503, 564
RsaNI	GTAC	3 cut(s)	64, 502, 563
RseI	CAYNNNNRTG	2 cut(s)	183, 319
SaqAI	TTAA	4 cut(s)	48, 150, 230, 581
SatI	GCNGC	1 cut(s)	602
Sau3AI	GATC	3 cut(s)	17, 69, 451
Sau96I	GGNCC	2 cut(s)	40, 259
ScrFI	CCNGG	4 cut(s)	34, 116, 257, 619
SetI	ASST	5 cut(s)	38, 287, 306, 623, 628
SfaNI	GCATC	1 cut(s)	342
SinI	GGWCC	1 cut(s)	40
SmiMI	CAYNNNNRTG	2 cut(s)	183, 319
SmlI	CTYRAG	1 cut(s)	655
SmoI	CTYRAG	1 cut(s)	655
Sse9I	AATT	2 cut(s)	206, 297
SsiI	CCGC	1 cut(s)	211
SspI	AATATT	1 cut(s)	174
SspMI	CTAG	2 cut(s)	336, 575
StyD4I	CCNGG	4 cut(s)	32, 114, 255, 617
TaaI	ACNGT	2 cut(s)	438, 514
TaqI	TCGA	1 cut(s)	16
TasI	AATT	2 cut(s)	206, 297
TatI	WGTACW	1 cut(s)	501
TfiI	GAWTC	3 cut(s)	529, 542, 645
Tru1I	TTAA	4 cut(s)	48, 150, 230, 581
Tru9I	TTAA	4 cut(s)	48, 150, 230, 581
TscAI	CASTG	1 cut(s)	555
TseFI	GTSAC	1 cut(s)	550
TseI	GCWGC	1 cut(s)	601
Tsp45I	GTSAC	1 cut(s)	550
TspDTI	ATGAA	6 cut(s)	167, 201, 219, 226, 483, 637
TspGWI	ACGGA	2 cut(s)	121, 621
TspRI	CASTG	1 cut(s)	555
VpaK11BI	GGWCC	1 cut(s)	40
XceI	RCATGY	1 cut(s)	374
XspI	CTAG	2 cut(s)	336, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.